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Showing : trimmomatic • reset
7
Votes
6
Replies
310
Views
Shell script to automate trimmomatic for multiple samples
7 Votes | 6 Replies
trimmomatic shell bash Tool
10 months ago
Vijay Lakhujani 4.1k
0
Votes
0
Replies
103
Views
Understanding trimmomatic adapter files and trimming
0 Votes | 0 Replies
trimmomatic RNA-Seq
10 months ago
Ml6237 • 0
0
Votes
5
Replies
152
Views
MarkDuplicates: Mates are missing
0 Votes | 5 Replies
rna-seq trimmomatic Hisat2 picardtools samtools
10 months ago
swarajgaikwad15 • 0
7
Votes
14
Replies
319
Views
General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
7 Votes | 14 Replies
RNA-Seq trimmomatic trimming adapters
11 months ago
Mozart • 130 • updated 11 months ago
swbarnes2 5.7k
9
Votes
7
Replies
4.9k
Views
How to align Trimmomatic unpaired reads with BWA?
9 Votes | 7 Replies
BWA Trimmomatic Unpaired reads
4.9 years ago
mcff23 • 60 • updated 12 months ago
drake.edwards • 0
5
Votes
6
Replies
412
Views
What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
5 Votes | 6 Replies
ATAC-Seq Trimmomatic Adapter Trimming
13 months ago
Gary • 450 • updated 13 months ago
h.mon 25k
1
Vote
3
Replies
255
Views
Trimmomatic Error : java.lang.ArrayIndexOutOfBoundsException: 1
1 Vote | 3 Replies
QC trimmomatic
13 months ago
bwee • 0
5
Votes
3
Replies
415
Views
Suggestions for Trimmomatic and "illuminaclip" parameter
5 Votes | 3 Replies
RNA-Seq trimming trimmomatic illuminaclip
13 months ago
Batu • 150 • updated 13 months ago
caggtaagtat • 620
0
Votes
1
Reply
452
Views
Hisat2 after the use of trimmomatic software: (ERR): hisat2-align exited with value 134
0 Votes | 1 Reply
trimmomatic RNA-Seq Hisat2 new tuxedo protocol
14 months ago
swarajgaikwad15 • 0 • updated 14 months ago
ATpoint 17k
0
Votes
5
Replies
235
Views
Trinity reads are not identical-
0 Votes | 5 Replies
rna-seq trinity Assembly error trimmomatic
14 months ago
sneha.preha7 • 0
5
Votes
2
Replies
355
Views
Trimmomatic "no such file or directory" error with reverse input
5 Votes | 2 Replies
trimmomatic trimming
15 months ago
emilyc • 0 • updated 15 months ago
finswimmer 11k
0
Votes
2
Replies
222
Views
Problem in Sequence Length Distribution
0 Votes | 2 Replies
sequence lenght trimmomatic quality fastqc
15 months ago
vitorgomesbio • 0
2
Votes
9
Replies
407
Views
Trimmomatic not trimming the adapter
2 Votes | 9 Replies
Trimmomatic small RNA
17 months ago
S • 90 • updated 15 months ago
Biostar 20
0
Votes
0
Replies
198
Views
Trimmomatic confirmation, multiple indeces per sample?!
0 Votes | 0 Replies
Trimming Trimmomatic RNAseq
15 months ago
T_18 • 40 • updated 15 months ago
finswimmer 11k
7
Votes
5
Replies
358
Views
How to save trimmomatic terminal summary to an output file?
7 Votes | 5 Replies
trimmomatic
15 months ago
DNAngel • 30
2
Votes
7
Replies
483
Views
Low percentage of Illumina reads retained after trimming with Trimmomatic
2 Votes | 7 Replies
genome sequencing trimmomatic
16 months ago
Bea • 0 • updated 16 months ago
ATpoint 17k
1
Vote
6
Replies
351
Views
the lower unique mapping rate after Trimming
1 Vote | 6 Replies
RNA-Seq STAR trimmomatic
16 months ago
lilingjoyo • 30
0
Votes
3
Replies
196
Views
Cannot Generate Trimmomatic Output Files
0 Votes | 3 Replies
trimmomatic RNA-Seq
16 months ago
matthew.sinton • 0 • updated 16 months ago
finswimmer 11k
0
Votes
4
Replies
377
Views
Trimmomatic Unknown Trimmer Error for Output File
0 Votes | 4 Replies
Trimmomatic RNA-Seq
17 months ago
calvin.davey • 10
0
Votes
1
Reply
213
Views
Threshold Quality Default Number
0 Votes | 1 Reply
Threshold Quality Control Leading Trimmomatic
17 months ago
vitorgomesbio • 0 • updated 17 months ago
finswimmer 11k
1
Vote
10
Replies
3.5k
Views
Unable to access jarfile trimmomatic-0.35
1 Vote | 10 Replies
RNA-Seq Trimmomatic Paired end reads
2.6 years ago
Ambika • 20 • updated 18 months ago
kristina.mahan • 30
2
Votes
3
Replies
422
Views
Trimmomatic execution removes the data from my fastq sequence file. What am I doing wrong?
2 Votes | 3 Replies
Trimmomatic
18 months ago
kristina.mahan • 30
2
Votes
14
Replies
759
Views
Error: Help understand Trimmomatic ZLIB input stream error
2 Votes | 14 Replies
Trimmomatic
19 months ago
James Reeve • 80
1
Vote
6
Replies
818
Views
Trimmomatic only for removing adapters
1 Vote | 6 Replies
trimmomatic RNA-Seq
21 months ago
grant.hovhannisyan ♦ 1.5k • updated 19 months ago
jenn.drummond • 60
9
Votes
7
Replies
636
Views
How to process paired end data (using fastq-dump) to get Fw and Rv files
9 Votes | 7 Replies
RNA-Seq Fastq SRA toolkit trimmomatic
19 months ago
2405592M • 30
4
Votes
14
Replies
854
Views
Using Trimommatic to only clip adapters on multiple fastq files.
4 Votes | 14 Replies
rna-seq Trimmomatic
20 months ago
imesi • 20 • updated 20 months ago
Vijay Lakhujani 4.1k
2
Votes
6
Replies
455
Views
How do you decide the minimum length for the adapter that needs trimming for small RNAseq
2 Votes | 6 Replies
trimmomatic trimming adapter smallRNAseq
20 months ago
MAPK ♦ 1.4k
0
Votes
5
Replies
591
Views
miRNA-seq Trimmomatic adapter file
0 Votes | 5 Replies
miRNA-seq adapter Trimmomatic
20 months ago
inah • 20 • updated 20 months ago
WouterDeCoster 39k
2
Votes
8
Replies
723
Views
Trim Paired-end Fastq Files
2 Votes | 8 Replies
RNA-Seq trimmomatic paired-end
20 months ago
yuabrahamliu • 40 • updated 20 months ago
h.mon 25k
3
Votes
3
Replies
574
Views
How to determine which adapter to use while trimming?
3 Votes | 3 Replies
trimmomatic NGS fastq adapter
20 months ago
MAPK ♦ 1.4k • updated 20 months ago
sschmeier • 80
7
Votes
8
Replies
1.2k
Views
Interpretation of Trimmomatic Results after Paired-End Adapter Trimming
7 Votes | 8 Replies
RNA-Seq trimmomatic adapter trimming
21 months ago
sevenless • 20 • updated 21 months ago
mastal511 ♦ 2.0k
1
Vote
1
Reply
682
Views
Trimmomatic adapter clipping removes many reads even if "keepBothReads" parameter is selected
1 Vote | 1 Reply
Trimmomatic pair-end Illumina adapter trimming
22 months ago
al-ash • 100 • updated 21 months ago
finswimmer 11k
2
Votes
3
Replies
670
Views
Leftover adapter sequences after Trimmomatic trimming?
2 Votes | 3 Replies
RNA-Seq trimming Trimmomatic Adapters
21 months ago
annsun89 • 20 • updated 21 months ago
genomax 68k
0
Votes
1
Reply
637
Views
kmer content changes after trimming and removing adapters from reads
0 Votes | 1 Reply
DNAseq trimmomatic fastqc
21 months ago
serpalma.v • 20
8
Votes
14
Replies
1.7k
Views
Which truseq trimmomatic adapters file to use when removing truseq adapters?
8 Votes | 14 Replies
adapters trimmomatic RNA-seq
21 months ago
salamandra • 200
4
Votes
11
Replies
971
Views
What is Trimmomatic -validatePairs, and how to use it?
4 Votes | 11 Replies
trimmomatic
21 months ago
jon.brate • 220 • updated 21 months ago
h.mon 25k
5
Votes
3
Replies
1.5k
Views
LEADING and TRAILING in TRIMMOMATIC
5 Votes | 3 Replies
RNA-Seq trimmomatic
22 months ago
grant.hovhannisyan ♦ 1.5k • updated 22 months ago
YaGalbi ♦ 1.4k
2
Votes
2
Replies
494
Views
Trimmomatic Error and Permission Denied
2 Votes | 2 Replies
Trimmomatic Error Linux Permission Denied
22 months ago
boydmm6 • 0
5
Votes
1
Reply
1.7k
Views
What is a good Trimmomatic parameter?
5 Votes | 1 Reply
trimmomatic RNA-Seq ngs sequencing
22 months ago
Arindam Ghosh • 160
15
Votes
19
Replies
523
Views
trimmomaric command for a fasta file?
15 Votes | 19 Replies
trimmomatic
23 months ago
Nadin.asal • 0 • updated 23 months ago
RamRS 21k
97 results • Page 1 of 3
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Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
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Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
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Recent Replies
Comment: This is a test post by Natay Aberra 0
@Natay-Aberra test the mentions still work
Answer: This is a test post by Natay Aberra 0
Add an answer to this
Comment: This is a test post by Natay Aberra 0
Add a comment to this
Comment: Test tweet by genomax 68k
https://twitter.com/EricTopol/status/1241821959584747521?s=09
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by mdondrup+1463528 • 30
one more maybe
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by Michael 100
and another one....
Comment: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by Michael 100
i am nutz
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by Michael 100
bla`enter code here` #!/bin/basj echo # hi
Comment: How to deal with the .sra.vdbcache files after downloading a sra file? by ATpoint 17k
Just delete.
Comment: How to deal with the .sra.vdbcache files after downloading a sra file? by Jon • 10
Did you solve the mystery? I have the same question and I could not find any clear answers...
Comment: Testing recipe link by Istvan Albert 80k
@genomax18713 change your handle to make it simpler
Comment: Testing recipe link by Istvan Albert 80k
let's see if the parenthesis at the end is fixed (https://www.biostars.org) or like this (see https://www.biostars.org)
Comment: Testing by ATpoint 17k
@ATpoint ping
Answer: How do play audio (playsound) in background of Python script? by genomax 68k
https://gist.github.com/afrendeiro/6732a46b949e864d6803
Comment: Testing by RamRS 21k
A `new_biostars` tag, @genomax18713? Seriously?
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