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46 results • Page
1 of 1
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Showing :
transcriptomics
•
reset
2
Votes
7
Replies
192
Views
Where is the (hg19) reference data for transcript isoforms' relative abundances for each gene?
RNA-Seq
transcriptomics
isoforms
21 months ago
Joel Wallenius
• 10
• updated 21 months ago
i.sudbery
4.7k
0
Votes
2
Replies
172
Views
Confounding factors when comparing effects of expression between RNA-seq samples and qPCR samples?
RNA-Seq
qrtpcr
qpcr
transcriptomics
expression
21 months ago
michael.nagle
• 100
• updated 21 months ago
Devon Ryan
90k
0
Votes
0
Replies
125
Views
Approaches to sum gene expression into pathways/other gene sets and problem of negatively correlated genes
RNA-Seq
microarray
gsva
pathways
transcriptomics
21 months ago
mdihcroe
• 0
2
Votes
3
Replies
335
Views
De novo transcriptome assembly produce too many transcripts
assembly
transcriptomics
RNA-Seq
trinity
2.0 years ago
21afiq
• 0
• updated 2.0 years ago
Corentin
• 290
1
Vote
3
Replies
303
Views
baseline error distribution and missing values
gene expression
LPE
Transcriptomics
2.4 years ago
vasilislenis
• 100
• updated 2.4 years ago
Kevin Blighe
43k
0
Votes
0
Replies
295
Views
Tool:
Interrogate & visualise transcriptomics data, at scale, without support of a bioinformatician
Transcriptomics
Expression Data
Tool
2.4 years ago
craig.smith
• 0
0
Votes
0
Replies
417
Views
How associate raw reads with MetaCyc/Taxonomy from HUMAnN2?
humann2
transcriptomics
metacyc
humann
2.5 years ago
O.rka
• 110
1
Vote
2
Replies
374
Views
Show RNASeq coverage distribution over transcript length
RNA-Seq
BAM
sequencing
Transcriptomics
2.6 years ago
Federico Giorgi
• 490
• updated 2.6 years ago
Carlo Yague
♦ 4.5k
0
Votes
0
Replies
294
Views
Difference of 5' and 3' mRNA analysis
RNA-Seq
transcriptomics
10x
2.6 years ago
heir_of_isildur88
• 10
6
Votes
12
Replies
2.5k
Views
Simplest way to perform GSEA from a weighted list of entrez gene ids
gsea
enrichment
transcriptomics
4.5 years ago
rachel.cavill
• 30
• updated 2.7 years ago
pshubhamoy
• 20
0
Votes
0
Replies
392
Views
Efficient Sequence Length Comparison
python
transcriptomics
OrthoFinder
orthologs
2.9 years ago
alexander.trouern-trend
• 0
0
Votes
0
Replies
569
Views
Job:
Bioinformatician Job 2018 @ MRC-University Of Glasgow Centre For Virus Research
transcriptomics
viral genomics
Job
bioinformatics
2.9 years ago
David Robertson
• 0
0
Votes
5
Replies
1.0k
Views
counts in rna-seq cpm
RNA-Seq
edgeR
cpm
transcriptomics
data
2.9 years ago
vm.higareda
• 20
• updated 2.9 years ago
h.mon
25k
2
Votes
1
Reply
597
Views
Best method to assemble low-abundance transcripts?
assembly
rna-seq
illumina
transcriptomics
3.0 years ago
molly77
• 10
• updated 3.0 years ago
Macspider
♦ 2.8k
3
Votes
3
Replies
795
Views
Job:
Internship in Genomics and Transcriptomics
Genomics
Transcriptomics
Internship
Job
3.0 years ago
Oommen K Mathew
• 0
0
Votes
0
Replies
472
Views
Salmon -- prepare reads
salmon
transcriptomics
RNA-seq
NGS
3.0 years ago
afabian
• 0
4
Votes
7
Replies
443
Views
Algorithms to know when starting out analyzing transcriptome data
RNA-Seq
transcriptomics
algorithms
3.0 years ago
dickson8988
• 0
2
Votes
6
Replies
1.1k
Views
edgeR understanding statistics
RNA-Seq
edgeR
statistics
transcriptomics
3.3 years ago
vm.higareda
• 20
• updated 3.3 years ago
Kevin Blighe
43k
2
Votes
0
Replies
591
Views
Job:
Postdoctoral Fellow: Algorithms for Long Read Transcript Quantification (Singapore)
rna-seq
long read
transcriptomics
Job
3.4 years ago
gokej
• 20
7
Votes
4
Replies
919
Views
SNPEFF for de novo transcriptome annotation
SNP
Assembly
Transcriptomics
Denovo
3.5 years ago
Arsalan
• 10
• updated 3.5 years ago
moxu
• 440
0
Votes
0
Replies
500
Views
basic question cuffdiff
RNA-Seq
cuffdiff
transcriptomics
3.6 years ago
vm.higareda
• 20
0
Votes
4
Replies
649
Views
How to find and download the Database from a particular gene in NCBI
RNA-Seq
Transcriptomics
3.7 years ago
a.mailli
• 0
1
Vote
0
Replies
955
Views
Job:
A postdoctoral position is available at CIBIO, University of Trento, Trento, Italy
transcriptomics
epigenetics
genomics
Job
3.9 years ago
Nicola Casiraghi
• 450
• updated 3.9 years ago
genomax
68k
0
Votes
0
Replies
691
Views
Periodic versus Linear Trends in Gene Expression Time Series Plots?
RNA-Seq
software error
time-series
transcriptomics
3.9 years ago
tfhahn
• 50
0
Votes
1
Reply
738
Views
Functional interpretation of a bacterial transcriptome
transcriptomics
bacteria
functional annotation
4.0 years ago
fhsantanna
• 440
1
Vote
1
Reply
1.7k
Views
Data resources for Chromatin accessibility (DNAse, FAIRE, ATAC - seq) and Transcriptomics (RNA-seq, expression profilling)
Chromatin Accessibility
Transcriptomics
4.9 years ago
Bioinformatist Newbie
• 230
• updated 4.0 years ago
apa@stowers
• 420
0
Votes
0
Replies
1.8k
Views
Comparison of module expression across WGCNA networks
WGCNA
Transcriptomics
4.2 years ago
dmcleanuk
• 0
0
Votes
3
Replies
1.7k
Views
What is the state of multi-omics dataset ?
proteomics
transcriptomics
metabolomics
5.0 years ago
tevlon84
• 30
• updated 4.2 years ago
ypriverol
• 0
0
Votes
0
Replies
859
Views
Paired transcriptomics and lipidomics data
RNA-Seq
transcriptomics
lipidomics
classification
4.2 years ago
ncl.lazzarini
• 90
0
Votes
6
Replies
936
Views
Comparison of DEG lists
limma
microarray
transcriptomics
4.2 years ago
dmcleanuk
• 0
1
Vote
2
Replies
635
Views
Do I need to explicitly remove rRNA from E. coli RNAseq data?
rrna
rnaseq
ecoli
transcriptomics
4.2 years ago
Lina F
• 150
1
Vote
1
Reply
931
Views
How to (1) combine two loci into one gene to correct genome and (2) re-run Cuffdiff to find correct FPKM of combined gene
genomics
transcriptomics
RNA-Seq
RNA
cDNA
4.3 years ago
michael.nagle
• 100
2
Votes
13
Replies
1.3k
Views
Viral RNA-Seq Cufflinks not producing output
cufflinks
RNA-Seq
rna-seq
transcriptomics
4.4 years ago
Dan Gaston
7.1k
0
Votes
2
Replies
1.2k
Views
Compute for individual Fst of SNPs from a transcriptomic data (pooled samples)
SNP
Transcriptomics
4.5 years ago
jfo
• 10
0
Votes
0
Replies
778
Views
Tool:
Dynamic Functional Analysis Tool for Time-course or Multiple Comparisons Omics
RNA-Seq
transcriptomics
microarray
analysis
Tool
4.6 years ago
nguyenau
• 0
0
Votes
0
Replies
833
Views
Simultaneous over expression of transcription factors characterization
RNA-Seq
PCA
Simulation
transcriptomics
4.6 years ago
sebastiano.curreli
• 0
2
Votes
0
Replies
1.3k
Views
Tutorial:
How to do pathway analysis with transcriptomics data using ArrayAnalysis.org
pathway analysis
transcriptomics
R
Tutorial
4.6 years ago
friederike.ehrhart
• 20
2
Votes
3
Replies
879
Views
Aligning RNA-seq data against just a small set of transcripts of interest (and counting)
RNA-Seq
alignment
transcriptomics
4.7 years ago
jpascualanaya
• 10
3
Votes
3
Replies
1.1k
Views
Looking for a review paper on Transcriptomics ? (Recommendation)
RNA-Seq
Transcriptomics
4.9 years ago
tevlon84
• 30
• updated 4.9 years ago
Biostar
20
0
Votes
0
Replies
779
Views
Tutorial on integration of transcriptomic and proteomic data for understanding diseases system
transcriptomics
proteomics
R
5.2 years ago
Bioinformatist Newbie
• 230
3
Votes
0
Replies
2.0k
Views
Job:
Postdoctoral position in computational genomics and transcriptional regulation, Copenhagen, Denmark
genomics
transcriptomics
enhancers
promoters
Job
5.8 years ago
Robin Andersson
• 60
1
Vote
0
Replies
2.8k
Views
Job:
PhD student position in computational genomics and transcriptional regulation, Copenhagen, Denmark
genomics
transcriptomics
enhancers
promoters
Job
5.8 years ago
Robin Andersson
• 60
0
Votes
0
Replies
1.1k
Views
Tutorial:
Live webinar on Integrated Analysis using Metadata Framework and Correlation Analysis
proteomics
metabolomics
transcriptomics
genomics
Tutorial
5.8 years ago
Genomics
• 70
17
Votes
7
Replies
7.0k
Views
News:
Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
RNA-Seq
workshop
Assembly
transcriptomics
News
6.2 years ago
David Langenberger
8.9k
4
Votes
4
Replies
8.9k
Views
FPKM values / Data analysis
RNA-Seq
FPKM
Analysis
transcriptomics
6.7 years ago
Biogeek
• 350
4
Votes
0
Replies
4.0k
Views
Job:
Bioinformatics PhD Studentship Available at Massey University, Auckland, New Zealand
Transcriptomics
PhD
studentship
Genomics
job
Job
6.7 years ago
sschmeier
• 80
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