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75 results • Page
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tabix
•
reset
4
Votes
3
Replies
170
Views
tabix to exclude chromosomes from vcf
snp
vcf
tabix
19 months ago
cubellis
• 10
• updated 19 months ago
zx8754
7.5k
6
Votes
9
Replies
238
Views
How to separate chrY from a WGS vcf file?
tabix
dantelabs
wgs
yfull
bam
21 months ago
krt
• 0
1
Vote
6
Replies
326
Views
Error using Tabix
vcf
tabix
R
23 months ago
AS
• 0
• updated 23 months ago
dariober
10k
0
Votes
1
Reply
243
Views
trouble with tabix on generic file
tabix
samtools
2.3 years ago
gewa
• 0
94
Votes
8
Replies
57k
Views
Generate vcf.gz file and its index file vcf.gz.tbi
vcf
tabix
8.1 years ago
lyz10302012
• 330
• updated 2.3 years ago
zx8754
7.5k
4
Votes
3
Replies
4.1k
Views
Sorting with vcftools for tabix gone wrong
vcftools
tabix
sort
vcf
index
6.3 years ago
axelwilhelm
• 100
• updated 2.7 years ago
Biostar
20
6
Votes
9
Replies
1.2k
Views
tabix for ID column
snp
tabix
3.6 years ago
finswimmer
11k
• updated 2.7 years ago
Alex Reynolds
28k
6
Votes
3
Replies
3.2k
Views
loading plink format (generated by vcftools) file into Haploview
genome
tabix
plink
vcftools
haploview
5.7 years ago
ernesto.lowy
• 10
• updated 3.0 years ago
Christopher Walker
• 40
4
Votes
18
Replies
2.7k
Views
Trouble indexing a .vcf.gz file
tabix
vcf
compressing
vcf.gz
3.1 years ago
ricfoz
• 30
• updated 3.1 years ago
RamRS
21k
1
Vote
4
Replies
628
Views
How do I remove files that only contain a header OR get tabix not to output a file when the input does not have SNPs in the specific region
SNP
tabix
3.1 years ago
kyle
• 0
• updated 3.1 years ago
Pierre Lindenbaum
120k
0
Votes
0
Replies
705
Views
Error in Adding 1000Genomes Ancestral Allele info: Using VCF tools fill-aa
vcftools
samtools
faidx
tabix
1000Genomes
3.3 years ago
shrutishreyajha
• 0
1
Vote
7
Replies
1.2k
Views
bcftools merge, error "Could not parse the region(s)"
bcftools
vcf
merge
tabix
3.3 years ago
agathejouet
• 0
• updated 3.3 years ago
Pierre Lindenbaum
120k
6
Votes
8
Replies
1.2k
Views
VCF tabix query by ID column
tabix
vcf
3.3 years ago
liangzebin5566
• 30
• updated 3.3 years ago
Alex Reynolds
28k
62
Votes
18
Replies
36k
Views
14 follow
Extract Sub-Set Of Regions From Vcf File
vcf
tabix
genome
filter
8.6 years ago
Rubal7
• 760
• updated 3.3 years ago
geocarvalho
• 110
0
Votes
0
Replies
851
Views
GFF from tabular Blast output
blast
GFF
Tabix
IGV
3.4 years ago
salvatore.lachina
• 0
2
Votes
4
Replies
5.4k
Views
Trouble With Tabix In Using Vcf Tools
vcftools
tabix
linux
7.4 years ago
C00101
• 0
• updated 3.4 years ago
bioscientist122
• 0
3
Votes
2
Replies
2.6k
Views
[E::hts_idx_push] chromosome blocks not continuous :Indexing of gff3 files using tabix error
gff3
tabix
gt gff
genometools
samtools
3.6 years ago
chevivien
• 70
• updated 3.6 years ago
WouterDeCoster
39k
2
Votes
4
Replies
2.0k
Views
tabix for multiple vcf
tabix
vcf
3.6 years ago
Motor Genetic
• 100
0
Votes
4
Replies
1.9k
Views
Vcf Tools Error
vcftools
tabix
7.5 years ago
tpeters1213
• 0
• updated 3.6 years ago
Biostar
20
3
Votes
4
Replies
1.1k
Views
Using tabix remotely against S3
tabix
3.7 years ago
andrewl
• 10
• updated 3.7 years ago
Santosh Anand
4.8k
5
Votes
4
Replies
691
Views
samtools/tabix with https support?
samtools
tabix
https
ssl
3.7 years ago
Alex Reynolds
28k
• updated 3.7 years ago
Pierre Lindenbaum
120k
8
Votes
16
Replies
1.3k
Views
Tool:
CuteVcf : A Qt application to view VCF file
vcf
tabix
Qt
htslib
gui
Tool
4.0 years ago
sacha
♦ 1.7k
8
Votes
2
Replies
2.5k
Views
tabix a text file
tabix
text
5.8 years ago
vigprasud
• 60
• updated 4.1 years ago
Biostar
20
2
Votes
10
Replies
4.7k
Views
Tabix With Gff3
tabix
gff
gff3
7.0 years ago
kevin.mohamed1992
• 0
• updated 4.2 years ago
marcela.uliano
• 50
19
Votes
16
Replies
6.6k
Views
7 follow
Get Snp Position From A Python Interface.
python
snp
tabix
coordinates
8.1 years ago
Peixe
• 580
• updated 4.2 years ago
forever
• 80
10
Votes
7
Replies
3.4k
Views
6 follow
Get number of variations in a huge VCF using Tabix?
tabix
vcf
variation
big data
5.2 years ago
Dan
• 500
• updated 4.3 years ago
Thomas Johnson
• 70
15
Votes
10
Replies
6.5k
Views
Retrieve Single Vcf From List Of Snp Rs#
tabix
vcf
1000genomes
8.0 years ago
Peixe
• 580
• updated 4.6 years ago
Scott
• 80
5
Votes
6
Replies
8.1k
Views
1000Genomes To Haploview
genome
haploview
vcftools
tabix
8.9 years ago
Guilherme
• 20
• updated 4.7 years ago
Laura
♦ 1.7k
0
Votes
0
Replies
1.0k
Views
Distinguishing between different formats for VCF file indexes
tabix
vcftools
bcftools
5.2 years ago
npontikos
• 0
• updated 4.7 years ago
Biostar
20
1
Vote
0
Replies
954
Views
Tabix::tabix_query: t is not of type tabix_tPtr
tabix
Ensembl84
1000G
4.8 years ago
wasteyae.steyaert
• 10
• updated 4.7 years ago
Biostar
20
1
Vote
4
Replies
1.2k
Views
VCF isnot compressed and indexed even after running bgzip and tabix,
vcf
bgzip
tabix
compression
4.7 years ago
kirannbishwa01
• 1000
6
Votes
2
Replies
2.1k
Views
How to create .tbi index file?
tabix
5.8 years ago
timofeevbog
• 30
• updated 4.8 years ago
cpcantalapiedra
• 140
3
Votes
1
Reply
1.3k
Views
Perl API for latest version of Tabix (now part of HTSlib)?
tabix
HTSlib
5.5 years ago
Christian
♦ 2.8k
• updated 4.8 years ago
ayates
• 60
6
Votes
5
Replies
4.8k
Views
tabix indexing issue
tabix
vcf
gz
4.9 years ago
bjlemmer
• 20
• updated 4.9 years ago
cmdcolin
♦ 1.2k
9
Votes
6
Replies
8.2k
Views
Reindex A Vcf File / How To Handle Cosmic Vcf Files
vcf
tabix
vcftools
7.7 years ago
secretjess
• 170
• updated 5.0 years ago
bjlemmer
• 20
6
Votes
5
Replies
2.2k
Views
Understanding tabix output
tabix
sequence
vfc.gz
5.0 years ago
bjlemmer
• 20
• updated 5.0 years ago
poojayakshi
• 10
2
Votes
4
Replies
1.1k
Views
Corrupted tabix index?
java
htsjdk
tabix
5.1 years ago
dariober
10k
0
Votes
6
Replies
2.7k
Views
Get the consensus sequence ... (I know, should be easy)
consensus
samtools
bcftools
mpileup
tabix
5.5 years ago
Marvin
• 140
• updated 5.5 years ago
Lesley Sitter
• 460
2
Votes
5
Replies
3.0k
Views
Can I un index a vcf.gz.tbi file?
next-gen
vcftools
tabix
plinkseq
5.6 years ago
HumeMarx
• 20
• updated 5.6 years ago
Devon Ryan
90k
30
Votes
4
Replies
7.9k
Views
vcf not indexing
tabix
5.8 years ago
alex
• 180
• updated 5.8 years ago
Sean Davis
25k
2
Votes
3
Replies
1.9k
Views
1000 Genome genotypes for list of snps
1000 genome
tabix
genotype
SNP
vcftools
5.8 years ago
Alexander Skates
• 340
1
Vote
6
Replies
1.2k
Views
tabix with specified coordinates
tabix
vcf
5.8 years ago
qmemcm
• 30
3
Votes
3
Replies
1.3k
Views
Removing sites/reads from BGZIp VCf
vcf
remove
tabix
delete
filter
6.1 years ago
ali
• 0
• updated 6.1 years ago
Pierre Lindenbaum
120k
21
Votes
23
Replies
11k
Views
7 follow
Use Tabix With A List Of Regions
tabix
8.5 years ago
win
• 810
• updated 6.2 years ago
Leonor Palmeira
3.7k
3
Votes
5
Replies
1.4k
Views
list all records in a vcf file?
tabix
bgzf
vcf
6.2 years ago
Tommy Carstensen
• 150
0
Votes
4
Replies
2.9k
Views
Error with Pysam tabix fetch
python
pysam
tabix
6.3 years ago
always_learning
• 970
3
Votes
10
Replies
2.7k
Views
Implement Bgzip Into C Program
samtools
tabix
c
8.3 years ago
FGV
• 110
• updated 6.5 years ago
Biostar
20
5
Votes
10
Replies
2.6k
Views
1000G Query / Using Tabix With A Proxy
tabix
vcftools
7.1 years ago
secretjess
• 170
• updated 6.6 years ago
Biostar
20
2
Votes
8
Replies
1.4k
Views
Working with 1000G data files
1000genomes
tabix
vcftools
6.6 years ago
goodcow
• 20
• updated 6.6 years ago
1234Jc4321
• 410
0
Votes
0
Replies
911
Views
Tabix indexing a masterVar file
tabix
CGI
masterVar
index
6.6 years ago
vlaufer
• 260
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