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Showing : sleuth • reset
0
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82
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Sleuth analysis with unbalanced categories
6 months ago dlukacsovich • 0
2
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1
Reply
786
Views
R formula in RNA-Seq differential analysis with multiple parameters
24 months ago Thibault D. • 510 • updated 6 months ago Biostar 20
0
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6
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186
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Kallisto/Sleuth DTE analysis - LRT test results in more DTE compared to Wald test.
6 months ago MK • 0
0
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1
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224
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Complicated Multi-factor Differential Expression
10 months ago gradstudentNew • 10 • updated 10 months ago Charles Warden 6.8k
4
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9
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1.5k
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kallisto + sleuth: no results
2.3 years ago stephanie.devos • 0 • updated 11 months ago gilbo • 20
18
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9
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2.3k
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Is Sleuth a good package?
12 months ago SmallChess • 480
0
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1
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1.3k
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What is the Sleuth intercept and how can Sleuth be used when you have >2 treatment types?
2.8 years ago james.lloyd • 80 • updated 12 months ago lalvarez • 10
1
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2
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239
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Problem with plot_bootstrap function in sleuth
12 months ago lalvarez • 10
0
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2
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302
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How to run sleuth in single run mode?
12 months ago aquaq • 10
1
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3
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631
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Is Kallisto Sleuth pipeline suitable for all organisms?
17 months ago SMILE • 100 • updated 14 months ago prasundutta87 • 330
2
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7
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620
Views
Comparison and cross-sample normalization for RNAseq from different experiments
14 months ago urjaswita • 80 • updated 14 months ago Devon Ryan 90k
0
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1
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1.1k
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Sleuth PCA plots - how to change axis to percentage?
2.3 years ago BioBing • 100 • updated 17 months ago bruce.moran • 610
4
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3
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1.4k
Views
Paired and Multivariate sleuth
2.3 years ago Tim D • 50 • updated 18 months ago samantha_jeschonek • 50
0
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1
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631
Views
Sleuth_prep error in R - unused argument
20 months ago Abiterkuile • 20
1
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1
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882
Views
add gene names from RefSeq instead of ENSEMBL using biomaRT for sleuth when reading kallisto output
20 months ago Abiterkuile • 20 • updated 20 months ago Emily_Ensembl 18k
0
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0
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655
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Is there a fair way to compare beta values from Sleuth output to the log Fold changes from EdgeR?
20 months ago cristina.osuna.cruz • 0
1
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2
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828
Views
Kallisto quant output file abundance.tsv and run_info.json missing
20 months ago Abiterkuile • 20 • updated 20 months ago Kevin Blighe 43k
0
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4
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994
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kallisto/sleuth for single sample pathway enrichment
21 months ago endre.sebestyen • 0 • updated 21 months ago Rik Verdonck • 60
3
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2
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1.4k
Views
Configuring sleuth for log2FC - What are the dangers?
21 months ago Lorenz Becker • 20
1
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3
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1.1k
Views
How do I create a Sleuth Wald Test
21 months ago scottschu97 • 10 • updated 21 months ago Kevin Blighe 43k
2
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1
Reply
571
Views
Sleuth: What is the correct function for fitting my sleuth object
21 months ago scottschu97 • 10 • updated 21 months ago Devon Ryan 90k
0
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0
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518
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Sleuth plot_pca function Question
22 months ago scottschu97 • 10
7
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6
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784
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Sleuth Error: System is computationally singular
22 months ago scottschu97 • 10 • updated 22 months ago Brian Gudenas • 90
11
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7
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3.3k
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Sleuth: Combined lrt and wt tests, clustered heatmap
2.9 years ago bioinfo8 • 120 • updated 24 months ago erdiazval • 40
1
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7
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997
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Transcripts with beta close to zero are considered differentially expressed in a likelihood-ratio test in sleuth
2.1 years ago elsoja • 30
0
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1
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1.1k
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Kallisto/Sleuth - issue when using own annotations in the sleuth_prep() function
2.4 years ago BioBing • 100
3
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4
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1.7k
Views
ENSEMBL Transcript_Accession ID conversion
3.7 years ago dinindu.senanayake • 0 • updated 2.4 years ago WouterDeCoster 39k
0
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1
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1.1k
Views
Error: Pathway analysis using Sleuth results
2.9 years ago bioinfo8 • 120 • updated 2.5 years ago bigmawen • 310
1
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0
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817
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transcript to gene mapping after sleuth run
2.5 years ago bioinfo8 • 120
2
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3
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753
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Will variance between the number of reads mapped in samples impact my differential analysis?
2.5 years ago a.rex • 190 • updated 2.5 years ago Istvan Albert 80k
1
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2
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2.1k
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Understanding Sleuth output for multiple samples
2.8 years ago Bharat Iyengar • 260
3
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1
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810
Views
DE analysis of low-expression transcripts
2.9 years ago elsoja • 30 • updated 2.9 years ago Devon Ryan 90k
2
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5
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1.1k
Views
Character matrix to Numeric matrix for heatmap
2.9 years ago bioinfo8 • 120
4
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5
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2.9k
Views
How do I obtain logFC values from sleuth results (both genes and isoforms)?
3.6 years ago cpcantalapiedra • 140 • updated 3.6 years ago andrew.j.skelton73 5.7k
4
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6
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3.0k
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differential gene expression using sleuth
3.6 years ago frida.danielsson • 40 • updated 3.6 years ago cpcantalapiedra • 140
1
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6
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1.9k
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get gene ids running sleuth kallisto for differential gene expression
3.7 years ago frida.danielsson • 40
36 results • Page 1 of 1
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Answer: test question 1
Answer: test question 1
Markdown
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New test post with the AJAX system
Answer: Markdown
Markdown
A: Which Are The Best Programming Languages For A Bioinformatician?
A: Which Are The Best Programming Languages For A Bioinformatician?
Answer: Which Are The Best Programming Languages For A Bioinformatician?
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Recent Replies
Answer: test question 1 by Linda • 20
more than 10 characters
Comment: Which Are The Best Programming Languages For A Bioinformatician? by Digital • 0
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Comment: " testing dfg " by RamRS 21k
Testing highlighting functionality. Using `<span style="background-color: #FFFF00">`: <span style="background-color: #FFFF00">Span trial</…
Comment: " testing dfg " by RamRS 21k
Testing <u>underline</u> functionality.
Answer: Which Are The Best Programming Languages For A Bioinformatician? by Anna • 0
I could recommend you this research - https://www.romexsoft.com/blog/aws-hipaa-compliance-best-practices-checklist/
Comment: " testing dfg " by RamRS 21k
Testing comment with parentheses in URL: (this URL: https://www.ncbi.nlm.nih.gov/search/all/?term=BRCA1%20AND%20(Human%20OR%20Mouse))
Comment: get gene biotype for hg38 refseq by Natay Aberra 0
test the bumping
Comment: get gene biotype for hg38 refseq by genomax 68k
http://test.biostars.org/accounts/profile/2/ http://test.biostars.org/p/34/
Comment: New test post with the AJAX system by Natay Aberra 0
Yeah we will probably end up doing that.
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/accounts/profile/18713/ http://test.biostars.org/p/p371267/#p371295 test the bumping
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/p/p371285/ http://test.biostars.org/accounts/profile/user-2/
Comment: New test post with the AJAX system by genomax 68k
Checking to see if this comment bumps the thread to top.
Comment: Markdown by genomax 68k
http://test.biostars.org/p/p371285/
Comment: Markdown by genomax 68k
@nba5048: Why is the original post showing up in separate sections? No way to use old style reference to users: http://test.biostars.org/a…
Comment: Markdown by Natay Aberra 0
Check your biostar messages, You did get a notification.
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