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Showing : sleuth • reset
0
Votes
0
Replies
87
Views
Sleuth analysis with unbalanced categories
0 Votes | 0 Replies
9 months ago
dlukacsovich • 0
2
Votes
1
Reply
794
Views
R formula in RNA-Seq differential analysis with multiple parameters
2 Votes | 1 Reply
2.2 years ago
Thibault D. • 510 • updated 9 months ago
Biostar 20
0
Votes
6
Replies
200
Views
Kallisto/Sleuth DTE analysis - LRT test results in more DTE compared to Wald test.
0 Votes | 6 Replies
9 months ago
MK • 0
0
Votes
1
Reply
233
Views
Complicated Multi-factor Differential Expression
0 Votes | 1 Reply
14 months ago
gradstudentNew • 10 • updated 13 months ago
Charles Warden 6.8k
4
Votes
9
Replies
1.6k
Views
kallisto + sleuth: no results
4 Votes | 9 Replies
2.5 years ago
stephanie.devos • 0 • updated 14 months ago
gilbo • 20
18
Votes
9
Replies
2.3k
Views
Is Sleuth a good package?
18 Votes | 9 Replies
15 months ago
SmallChess • 480
0
Votes
1
Reply
1.3k
Views
What is the Sleuth intercept and how can Sleuth be used when you have >2 treatment types?
0 Votes | 1 Reply
3.1 years ago
james.lloyd • 80 • updated 15 months ago
lalvarez • 10
1
Vote
2
Replies
247
Views
Problem with plot_bootstrap function in sleuth
1 Vote | 2 Replies
15 months ago
lalvarez • 10
0
Votes
2
Replies
311
Views
How to run sleuth in single run mode?
0 Votes | 2 Replies
15 months ago
aquaq • 10
1
Vote
3
Replies
644
Views
Is Kallisto Sleuth pipeline suitable for all organisms?
1 Vote | 3 Replies
21 months ago
SMILE • 100 • updated 17 months ago
prasundutta87 • 330
2
Votes
7
Replies
632
Views
Comparison and cross-sample normalization for RNAseq from different experiments
2 Votes | 7 Replies
17 months ago
urjaswita • 80 • updated 17 months ago
Devon Ryan 90k
0
Votes
1
Reply
1.1k
Views
Sleuth PCA plots - how to change axis to percentage?
0 Votes | 1 Reply
2.5 years ago
BioBing • 100 • updated 20 months ago
bruce.moran • 610
4
Votes
3
Replies
1.4k
Views
Paired and Multivariate sleuth
4 Votes | 3 Replies
2.5 years ago
Tim D • 50 • updated 21 months ago
samantha_jeschonek • 50
0
Votes
1
Reply
637
Views
Sleuth_prep error in R - unused argument
0 Votes | 1 Reply
23 months ago
Abiterkuile • 20
1
Vote
1
Reply
890
Views
add gene names from RefSeq instead of ENSEMBL using biomaRT for sleuth when reading kallisto output
1 Vote | 1 Reply
23 months ago
Abiterkuile • 20 • updated 23 months ago
Emily_Ensembl 18k
0
Votes
0
Replies
660
Views
Is there a fair way to compare beta values from Sleuth output to the log Fold changes from EdgeR?
0 Votes | 0 Replies
23 months ago
cristina.osuna.cruz • 0
1
Vote
2
Replies
834
Views
Kallisto quant output file abundance.tsv and run_info.json missing
1 Vote | 2 Replies
23 months ago
Abiterkuile • 20 • updated 23 months ago
Kevin Blighe 43k
0
Votes
4
Replies
1.0k
Views
kallisto/sleuth for single sample pathway enrichment
0 Votes | 4 Replies
24 months ago
endre.sebestyen • 0 • updated 24 months ago
Rik Verdonck • 60
3
Votes
2
Replies
1.4k
Views
Configuring sleuth for log2FC - What are the dangers?
3 Votes | 2 Replies
24 months ago
Lorenz Becker • 20
1
Vote
3
Replies
1.1k
Views
How do I create a Sleuth Wald Test
1 Vote | 3 Replies
2.0 years ago
scottschu97 • 10 • updated 2.0 years ago
Kevin Blighe 43k
2
Votes
1
Reply
577
Views
Sleuth: What is the correct function for fitting my sleuth object
2 Votes | 1 Reply
2.1 years ago
scottschu97 • 10 • updated 2.1 years ago
Devon Ryan 90k
0
Votes
0
Replies
524
Views
Sleuth plot_pca function Question
0 Votes | 0 Replies
2.1 years ago
scottschu97 • 10
7
Votes
6
Replies
794
Views
Sleuth Error: System is computationally singular
7 Votes | 6 Replies
2.1 years ago
scottschu97 • 10 • updated 2.1 years ago
Brian Gudenas • 90
11
Votes
7
Replies
3.3k
Views
Sleuth: Combined lrt and wt tests, clustered heatmap
11 Votes | 7 Replies
3.2 years ago
bioinfo8 • 120 • updated 2.2 years ago
erdiazval • 40
1
Vote
7
Replies
1.0k
Views
Transcripts with beta close to zero are considered differentially expressed in a likelihood-ratio test in sleuth
1 Vote | 7 Replies
2.4 years ago
elsoja • 30
0
Votes
1
Reply
1.1k
Views
Kallisto/Sleuth - issue when using own annotations in the sleuth_prep() function
0 Votes | 1 Reply
2.7 years ago
BioBing • 100
3
Votes
4
Replies
1.7k
Views
ENSEMBL Transcript_Accession ID conversion
3 Votes | 4 Replies
3.9 years ago
dinindu.senanayake • 0 • updated 2.7 years ago
WouterDeCoster 39k
0
Votes
1
Reply
1.1k
Views
Error: Pathway analysis using Sleuth results
0 Votes | 1 Reply
3.1 years ago
bioinfo8 • 120 • updated 2.7 years ago
bigmawen • 310
1
Vote
0
Replies
821
Views
transcript to gene mapping after sleuth run
1 Vote | 0 Replies
2.8 years ago
bioinfo8 • 120
2
Votes
3
Replies
757
Views
Will variance between the number of reads mapped in samples impact my differential analysis?
2 Votes | 3 Replies
2.8 years ago
a.rex • 190 • updated 2.8 years ago
Istvan Albert 80k
1
Vote
2
Replies
2.1k
Views
Understanding Sleuth output for multiple samples
1 Vote | 2 Replies
3.0 years ago
Bharat Iyengar • 260
3
Votes
1
Reply
815
Views
DE analysis of low-expression transcripts
3 Votes | 1 Reply
3.1 years ago
elsoja • 30 • updated 3.1 years ago
Devon Ryan 90k
2
Votes
5
Replies
1.1k
Views
Character matrix to Numeric matrix for heatmap
2 Votes | 5 Replies
3.2 years ago
bioinfo8 • 120
4
Votes
5
Replies
2.9k
Views
How do I obtain logFC values from sleuth results (both genes and isoforms)?
4 Votes | 5 Replies
3.8 years ago
cpcantalapiedra • 140 • updated 3.8 years ago
andrew.j.skelton73 5.7k
4
Votes
6
Replies
3.1k
Views
differential gene expression using sleuth
4 Votes | 6 Replies
3.9 years ago
frida.danielsson • 40 • updated 3.8 years ago
cpcantalapiedra • 140
1
Vote
6
Replies
1.9k
Views
get gene ids running sleuth kallisto for differential gene expression
1 Vote | 6 Replies
3.9 years ago
frida.danielsson • 40
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