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58 results • Page
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Showing :
single-cell
•
reset
2
Votes
3
Replies
594
Views
de novo variant SNP calling from barcoded single-cell data
RNA-Seq
vcf
single-cell
2.8 years ago
dominicdhall
• 40
• updated 21 months ago
niklas.lang
• 0
0
Votes
3
Replies
243
Views
Cannot read loom file in scanpy
single-cell
loom
seurat
22 months ago
Batu
• 150
1
Vote
2
Replies
533
Views
News:
Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
single-cell
rna-seq
webinar
scRNAseq
News
22 months ago
sonpham
• 560
0
Votes
0
Replies
194
Views
Job:
Postdoctoral Research Associate in cardiovascular genomics, Cambridge UK
genomics
single-cell
cardiovascular
Job
22 months ago
a11msp
• 110
0
Votes
3
Replies
182
Views
Waddington optimal transport for single-cell analysis
wot
single-cell
10x
RNA-Seq
Waddington
23 months ago
Assa Yeroslaviz
♦ 1.2k
3
Votes
0
Replies
202
Views
Tool:
Hera-T: an efficient and accurate algorithm for single-cell transcript quantification
scRNA-seq
single-cell
RNA-Seq
Tool
23 months ago
Jennifer Pham
• 290
1
Vote
0
Replies
183
Views
Is it advisable to do allele specific expression analysis on single cell RNA-Seq data?
RNA-Seq
Single-cell
NGS
ASE
SNP
2.0 years ago
Susmita Mandal
• 40
• updated 23 months ago
Biostar
20
0
Votes
0
Replies
280
Views
Job:
Postdoc and Ph.D. positions at KTH in the Lagergren group - Machine Learning in Computational Biology
machine learning
cancer
single-cell
postdoc
phd
Job
23 months ago
jens.lagergren
• 0
1
Vote
0
Replies
301
Views
(Single-cell RNA seq; R - Seurat) Re-clustering after removing cells using SubsetData
RNA-Seq
R
Seurat
Single-cell
23 months ago
vmallett
• 10
0
Votes
0
Replies
281
Views
Job:
Computational Science Research Assistant/Associate
single-cell
methylome
embryogenesis
bioinformatics
Job
23 months ago
russellshamilton
• 0
0
Votes
2
Replies
1.5k
Views
Analyzing MARS-seq (single-cell RNA seq) fastq files
RNA-Seq
alignment
single-cell
scRNA-seq
3.5 years ago
Eldad Shulman
• 0
• updated 24 months ago
kkarri
• 0
2
Votes
5
Replies
1.4k
Views
GSEA on single-cell cluster data
single-cell
GSEA
R
2.4 years ago
roy.granit
• 800
• updated 2.0 years ago
marcovicari3
• 0
1
Vote
1
Reply
411
Views
Job:
Tackle age-related disease, as genomics lead at Gordian Biotechnology
RNA-Seq
Startup
Aging
Single-cell
Job
2.2 years ago
Martin Borch Jensen
• 0
0
Votes
2
Replies
783
Views
10X scRNA-seq: Demultiplex into Samples with I1, R1, and R2 FASTQs
10x
single-cell
RNA-Seq
demultiplex
2.2 years ago
QVINTVS_FABIVS_MAXIMVS
♦ 2.2k
• updated 2.2 years ago
swbarnes2
5.7k
1
Vote
2
Replies
420
Views
Is there any way to infer percentage from the branches in trajectories plotted in Monocle?
single-cell
single cell
monocle
R
trajectory
2.5 years ago
Batu
• 150
• updated 2.2 years ago
leon.zhan
• 0
1
Vote
1
Reply
461
Views
Job:
Postdoc position in single-cell cancer genomics
scRNAseq
cancer
genomics
single-cell
rna-seq
Job
2.2 years ago
Allegra Petti
• 10
• updated 2.2 years ago
Chris Miller
20k
0
Votes
0
Replies
397
Views
Job:
Bioinformaticist/Computational Biologist - Emory University, Atlanta, GA, USA
RNA-Seq
single-cell
Rep-Seq
Job
2.2 years ago
amitupadhyay86
• 0
• updated 2.2 years ago
genomax
68k
1
Vote
1
Reply
492
Views
Merging single-cell RNA-seq from different platforms across different conditions
scRNAseq
single-cell
merging
platforms
2.3 years ago
mBrio
• 10
• updated 2.3 years ago
Minstein
• 100
0
Votes
0
Replies
455
Views
Differential expression using Scran batch corrected data
RNA-Seq
single-cell
Scran
Batch correction
2.3 years ago
baldissera152
• 0
0
Votes
1
Reply
790
Views
Smart-seq2 single-cell RNA-Seq
RNA-Seq
Smart-seq2
single-cell
2.3 years ago
wangdp123
• 150
• updated 2.3 years ago
kristoffer.vittingseerup
♦ 1.8k
0
Votes
1
Reply
370
Views
newSCESet and SingleCellExperiment basic differences and TMM Normalization
RNA-Seq
single-cell
R
2.4 years ago
hkarakurt
• 50
10
Votes
5
Replies
904
Views
How to append the cell barcode and UMI information to the fastq header in paired-end single-cell RNA-seq data?
rna-seq
fastq
sequence
single-cell
2.5 years ago
sc243
• 10
3
Votes
5
Replies
569
Views
Adding optional tags to a BAM file
RNA-Seq
bam
sam
single-cell
awk
2.5 years ago
sc243
• 10
0
Votes
5
Replies
352
Views
How to make this specific "pileup" like plot?
ggplot2
R
single-cell
2.5 years ago
vivekraiiitkgp
• 50
0
Votes
0
Replies
317
Views
Job:
Bioinformatician (Single Cell Analysis), Earlham Institute, Norwich, UK
next-gen
single-cell
bioinformatics
Job
2.5 years ago
cschu181
♦ 1.7k
3
Votes
2
Replies
684
Views
What is the reasonable proportion of zero counts in single-cell RNA-Seq data
rna-seq
single-cell rna-seq
single-cell
sc-RNA
2.6 years ago
boyu93
• 10
• updated 2.6 years ago
spacemorrissey
• 210
1
Vote
3
Replies
1.8k
Views
Why different tSNE plot with Seurat and Monocle if they'r using the same R package?
single-cell
tsne
R
Seurat
monocle
2.7 years ago
jgarces
• 10
• updated 2.7 years ago
dppb05
• 70
5
Votes
3
Replies
2.4k
Views
What is the difference between single-cell RNA-Seq and typical RNA-Seq in terms of data analysis procedure
single-cell
RNA-Seq
2.7 years ago
wangdp123
• 150
• updated 2.7 years ago
Devon Ryan
90k
6
Votes
6
Replies
1.3k
Views
How to add RG tag into the optional field in a BAM file
sequencing
single-cell
bam
samtools
2.8 years ago
gundalav
• 270
• updated 2.7 years ago
finswimmer
11k
7
Votes
8
Replies
1.2k
Views
lack of replicates in single-cell RNA-seq
RNA-Seq
scRNA-seq
single-cell
2.8 years ago
igor
7.7k
• updated 2.8 years ago
Friederike
4.2k
3
Votes
1
Reply
1.6k
Views
Variant calling on single-cell data
variant
single-cell
SNP
3.2 years ago
vinvan
• 50
• updated 2.8 years ago
oneillkza
• 80
0
Votes
0
Replies
640
Views
Job:
Bio informatician - Single cell RNA SEQ Analysis
RNA-Seq
Bio-informatician
sequencing
Single-Cell
Job
2.9 years ago
sandrina.evrard
• 0
0
Votes
2
Replies
644
Views
Differential expression between two biological samples sequenced with single-cell RNA-seq with thousands of cells in each
single-cell
rna-seq
R
differential expression
2.9 years ago
Naim.Mahi
• 40
2
Votes
1
Reply
1.2k
Views
Regulatory Network Inference from Single-cell RNAseq Data
RNA-Seq
single-cell
gene regulatory network
3.0 years ago
whou
• 0
• updated 3.0 years ago
genomax
68k
0
Votes
2
Replies
571
Views
Single-cell cluster : up- vs down-regulated marker genes
single-cell
marker genes
RNA-Seq
cluster
seurat
3.0 years ago
PR
• 10
• updated 3.0 years ago
igor
7.7k
0
Votes
1
Reply
1.2k
Views
GSVA for single-cell marker genes
R
RNA-Seq
gsva
single-cell
3.1 years ago
PR
• 10
• updated 3.0 years ago
Biostar
20
0
Votes
2
Replies
491
Views
Having trouble using the SAFE clustering method
single-cell
RNA-Seq
SAFE
clustering
cluster
3.1 years ago
Chynoki
• 0
0
Votes
0
Replies
676
Views
Job:
Research Associate (Bioinformatics) Centre for Trophoblast Research, University of Cambridge, UK
RNA-Seq
core-facility
Epigenetics
Single-cell
Job
3.3 years ago
russellshamilton
• 0
0
Votes
0
Replies
1.0k
Views
scRNA-seq: how to visualize SNN-Cliq clustering result
scRNAseq
single-cell
SNN
Snn-cliq
tsne
3.6 years ago
pacman
• 50
0
Votes
1
Reply
620
Views
SCDE Package scde.error.models ERROR
R
single-cell
RNA-Seq
3.6 years ago
shg018
• 0
• updated 3.6 years ago
dfscruz
• 0
2
Votes
2
Replies
1.0k
Views
Job:
Postdoc in Machine Learning Methods for Single-Cell Data
postdoc
single-cell
machine-learning
Job
3.9 years ago
lukas.kall
• 40
• updated 3.8 years ago
nasbelyakova
• 50
0
Votes
0
Replies
794
Views
Job:
Postdoctoral researcher at Bioinformatics Unit, Turku Centre for Biotechnology
R
sequencing
single-cell
omics
Job
3.9 years ago
mirkka.ruotsalainen
• 0
0
Votes
0
Replies
698
Views
News:
Optimizing Single-cell RNA-sequencing Workflows, A webinar hosted by Takara Bio and Formulatrix
RNA-Seq
single-cell
microfluidics
clontech
News
4.0 years ago
thomas.rawlins
• 0
5
Votes
4
Replies
3.6k
Views
Long Read Length, yet STAR says many reads too short
STAR
RNA-Seq
single-cell
alignment
4.0 years ago
dec986
• 200
• updated 4.0 years ago
datascientist28
• 390
6
Votes
0
Replies
1.5k
Views
Tool:
Control data for cross-contaminations on C1 ATAC-seq.
ATAC-seq
single-cell
data
Tool
4.1 years ago
Charles Plessy
♦ 2.7k
0
Votes
0
Replies
725
Views
Published scRNA data with bechmarks?
rna-seq
single-cell
next-gen
4.2 years ago
Vivian
• 0
7
Votes
14
Replies
998
Views
single-cell exome sequencing pipeline
SNP
exom
single-cell
next-gen
4.4 years ago
F
♦ 3.4k
0
Votes
1
Reply
954
Views
One BioSample per single cell ?
single-cell
transcriptome
metadata
4.7 years ago
Charles Plessy
♦ 2.7k
• updated 4.7 years ago
Biostar
20
20
Votes
4
Replies
3.8k
Views
Tutorial:
Analysis of single-cell RNA-seq data
RNA-Seq
single-cell
Tutorial
4.7 years ago
Geparada
♦ 1.4k
3
Votes
0
Replies
2.4k
Views
Job:
Postdoc in Computational Biology, Harvard Medical School
RNA-Seq
ChIP-Seq
R
single-cell
hi-c
Job
4.7 years ago
peter.kharchenko
• 30
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