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Showing : single-cell • reset
2
Votes
3
Replies
593
Views
de novo variant SNP calling from barcoded single-cell data
RNA-Seq vcf single-cell
2.3 years ago
dominicdhall • 40 • updated 15 months ago
niklas.lang • 0
0
Votes
3
Replies
241
Views
Cannot read loom file in scanpy
single-cell loom seurat
15 months ago
Batu • 150
1
Vote
2
Replies
528
Views
News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
single-cell rna-seq webinar scRNAseq News
15 months ago
sonpham • 560
0
Votes
0
Replies
194
Views
Job: Postdoctoral Research Associate in cardiovascular genomics, Cambridge UK
genomics single-cell cardiovascular Job
16 months ago
a11msp • 110
0
Votes
3
Replies
181
Views
Waddington optimal transport for single-cell analysis
wot single-cell 10x RNA-Seq Waddington
16 months ago
Assa Yeroslaviz ♦ 1.2k
3
Votes
0
Replies
200
Views
Tool: Hera-T: an efficient and accurate algorithm for single-cell transcript quantification
scRNA-seq single-cell RNA-Seq Tool
16 months ago
Jennifer Pham • 290
1
Vote
0
Replies
182
Views
Is it advisable to do allele specific expression analysis on single cell RNA-Seq data?
RNA-Seq Single-cell NGS ASE SNP
17 months ago
Susmita Mandal • 40 • updated 16 months ago
Biostar 20
0
Votes
0
Replies
278
Views
Job: Postdoc and Ph.D. positions at KTH in the Lagergren group - Machine Learning in Computational Biology
machine learning cancer single-cell postdoc phd Job
16 months ago
jens.lagergren • 0
1
Vote
0
Replies
301
Views
(Single-cell RNA seq; R - Seurat) Re-clustering after removing cells using SubsetData
RNA-Seq R Seurat Single-cell
16 months ago
vmallett • 10
0
Votes
0
Replies
281
Views
Job: Computational Science Research Assistant/Associate
single-cell methylome embryogenesis bioinformatics Job
17 months ago
russellshamilton • 0
0
Votes
2
Replies
1.5k
Views
Analyzing MARS-seq (single-cell RNA seq) fastq files
RNA-Seq alignment single-cell scRNA-seq
3.0 years ago
Eldad Shulman • 0 • updated 17 months ago
kkarri • 0
2
Votes
5
Replies
1.4k
Views
GSEA on single-cell cluster data
single-cell GSEA R
22 months ago
roy.granit • 800 • updated 17 months ago
marcovicari3 • 0
1
Vote
1
Reply
409
Views
Job: Tackle age-related disease, as genomics lead at Gordian Biotechnology
RNA-Seq Startup Aging Single-cell Job
19 months ago
Martin Borch Jensen • 0
0
Votes
2
Replies
781
Views
10X scRNA-seq: Demultiplex into Samples with I1, R1, and R2 FASTQs
10x single-cell RNA-Seq demultiplex
19 months ago
QVINTVS_FABIVS_MAXIMVS ♦ 2.2k • updated 19 months ago
swbarnes2 5.7k
1
Vote
2
Replies
415
Views
Is there any way to infer percentage from the branches in trajectories plotted in Monocle?
single-cell single cell monocle R trajectory
23 months ago
Batu • 150 • updated 20 months ago
leon.zhan • 0
1
Vote
1
Reply
458
Views
Job: Postdoc position in single-cell cancer genomics
scRNAseq cancer genomics single-cell rna-seq Job
20 months ago
Allegra Petti • 10 • updated 20 months ago
Chris Miller 20k
0
Votes
0
Replies
395
Views
Job: Bioinformaticist/Computational Biologist - Emory University, Atlanta, GA, USA
RNA-Seq single-cell Rep-Seq Job
20 months ago
amitupadhyay86 • 0 • updated 20 months ago
genomax 68k
1
Vote
1
Reply
490
Views
Merging single-cell RNA-seq from different platforms across different conditions
scRNAseq single-cell merging platforms
21 months ago
mBrio • 10 • updated 21 months ago
Minstein • 100
0
Votes
0
Replies
454
Views
Differential expression using Scran batch corrected data
RNA-Seq single-cell Scran Batch correction
21 months ago
baldissera152 • 0
0
Votes
1
Reply
790
Views
Smart-seq2 single-cell RNA-Seq
RNA-Seq Smart-seq2 single-cell
21 months ago
wangdp123 • 150 • updated 21 months ago
kristoffer.vittingseerup ♦ 1.8k
0
Votes
1
Reply
368
Views
newSCESet and SingleCellExperiment basic differences and TMM Normalization
RNA-Seq single-cell R
22 months ago
hkarakurt • 50
10
Votes
5
Replies
902
Views
How to append the cell barcode and UMI information to the fastq header in paired-end single-cell RNA-seq data?
rna-seq fastq sequence single-cell
23 months ago
sc243 • 10
3
Votes
5
Replies
566
Views
Adding optional tags to a BAM file
RNA-Seq bam sam single-cell awk
23 months ago
sc243 • 10
0
Votes
5
Replies
351
Views
How to make this specific "pileup" like plot?
ggplot2 R single-cell
23 months ago
vivekraiiitkgp • 50
0
Votes
0
Replies
314
Views
Job: Bioinformatician (Single Cell Analysis), Earlham Institute, Norwich, UK
next-gen single-cell bioinformatics Job
23 months ago
cschu181 ♦ 1.7k
3
Votes
2
Replies
684
Views
What is the reasonable proportion of zero counts in single-cell RNA-Seq data
rna-seq single-cell rna-seq single-cell sc-RNA
2.1 years ago
boyu93 • 10 • updated 2.1 years ago
spacemorrissey • 210
1
Vote
3
Replies
1.8k
Views
Why different tSNE plot with Seurat and Monocle if they'r using the same R package?
single-cell tsne R Seurat monocle
2.2 years ago
jgarces • 10 • updated 2.2 years ago
dppb05 • 70
5
Votes
3
Replies
2.4k
Views
What is the difference between single-cell RNA-Seq and typical RNA-Seq in terms of data analysis procedure
single-cell RNA-Seq
2.2 years ago
wangdp123 • 150 • updated 2.2 years ago
Devon Ryan 90k
6
Votes
6
Replies
1.3k
Views
How to add RG tag into the optional field in a BAM file
sequencing single-cell bam samtools
2.2 years ago
gundalav • 270 • updated 2.2 years ago
finswimmer 11k
7
Votes
8
Replies
1.2k
Views
lack of replicates in single-cell RNA-seq
RNA-Seq scRNA-seq single-cell
2.2 years ago
igor 7.7k • updated 2.2 years ago
Friederike 4.2k
3
Votes
1
Reply
1.6k
Views
Variant calling on single-cell data
variant single-cell SNP
2.6 years ago
vinvan • 50 • updated 2.3 years ago
oneillkza • 80
0
Votes
0
Replies
639
Views
Job: Bio informatician - Single cell RNA SEQ Analysis
RNA-Seq Bio-informatician sequencing Single-Cell Job
2.3 years ago
sandrina.evrard • 0
0
Votes
2
Replies
643
Views
Differential expression between two biological samples sequenced with single-cell RNA-seq with thousands of cells in each
single-cell rna-seq R differential expression
2.4 years ago
Naim.Mahi • 40
2
Votes
1
Reply
1.2k
Views
Regulatory Network Inference from Single-cell RNAseq Data
RNA-Seq single-cell gene regulatory network
2.4 years ago
whou • 0 • updated 2.4 years ago
genomax 68k
0
Votes
2
Replies
571
Views
Single-cell cluster : up- vs down-regulated marker genes
single-cell marker genes RNA-Seq cluster seurat
2.4 years ago
PR • 10 • updated 2.4 years ago
igor 7.7k
0
Votes
1
Reply
1.2k
Views
GSVA for single-cell marker genes
R RNA-Seq gsva single-cell
2.5 years ago
PR • 10 • updated 2.5 years ago
Biostar 20
0
Votes
2
Replies
490
Views
Having trouble using the SAFE clustering method
single-cell RNA-Seq SAFE clustering cluster
2.5 years ago
Chynoki • 0
0
Votes
0
Replies
676
Views
Job: Research Associate (Bioinformatics) Centre for Trophoblast Research, University of Cambridge, UK
RNA-Seq core-facility Epigenetics Single-cell Job
2.8 years ago
russellshamilton • 0
0
Votes
0
Replies
1.0k
Views
scRNA-seq: how to visualize SNN-Cliq clustering result
scRNAseq single-cell SNN Snn-cliq tsne
3.0 years ago
pacman • 50
0
Votes
1
Reply
619
Views
SCDE Package scde.error.models ERROR
R single-cell RNA-Seq
3.1 years ago
shg018 • 0 • updated 3.0 years ago
dfscruz • 0
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