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Showing : single-cell • reset
2
Votes
3
Replies
594
Views
de novo variant SNP calling from barcoded single-cell data
RNA-Seq vcf single-cell
2.8 years ago
dominicdhall • 40 • updated 21 months ago
niklas.lang • 0
0
Votes
3
Replies
243
Views
Cannot read loom file in scanpy
single-cell loom seurat
22 months ago
Batu • 150
1
Vote
2
Replies
533
Views
News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
single-cell rna-seq webinar scRNAseq News
22 months ago
sonpham • 560
0
Votes
0
Replies
194
Views
Job: Postdoctoral Research Associate in cardiovascular genomics, Cambridge UK
genomics single-cell cardiovascular Job
22 months ago
a11msp • 110
0
Votes
3
Replies
182
Views
Waddington optimal transport for single-cell analysis
wot single-cell 10x RNA-Seq Waddington
23 months ago
Assa Yeroslaviz ♦ 1.2k
3
Votes
0
Replies
202
Views
Tool: Hera-T: an efficient and accurate algorithm for single-cell transcript quantification
scRNA-seq single-cell RNA-Seq Tool
23 months ago
Jennifer Pham • 290
1
Vote
0
Replies
183
Views
Is it advisable to do allele specific expression analysis on single cell RNA-Seq data?
RNA-Seq Single-cell NGS ASE SNP
2.0 years ago
Susmita Mandal • 40 • updated 23 months ago
Biostar 20
0
Votes
0
Replies
280
Views
Job: Postdoc and Ph.D. positions at KTH in the Lagergren group - Machine Learning in Computational Biology
machine learning cancer single-cell postdoc phd Job
23 months ago
jens.lagergren • 0
1
Vote
0
Replies
301
Views
(Single-cell RNA seq; R - Seurat) Re-clustering after removing cells using SubsetData
RNA-Seq R Seurat Single-cell
23 months ago
vmallett • 10
0
Votes
0
Replies
281
Views
Job: Computational Science Research Assistant/Associate
single-cell methylome embryogenesis bioinformatics Job
23 months ago
russellshamilton • 0
0
Votes
2
Replies
1.5k
Views
Analyzing MARS-seq (single-cell RNA seq) fastq files
RNA-Seq alignment single-cell scRNA-seq
3.5 years ago
Eldad Shulman • 0 • updated 24 months ago
kkarri • 0
2
Votes
5
Replies
1.4k
Views
GSEA on single-cell cluster data
single-cell GSEA R
2.4 years ago
roy.granit • 800 • updated 2.0 years ago
marcovicari3 • 0
1
Vote
1
Reply
411
Views
Job: Tackle age-related disease, as genomics lead at Gordian Biotechnology
RNA-Seq Startup Aging Single-cell Job
2.2 years ago
Martin Borch Jensen • 0
0
Votes
2
Replies
783
Views
10X scRNA-seq: Demultiplex into Samples with I1, R1, and R2 FASTQs
10x single-cell RNA-Seq demultiplex
2.2 years ago
QVINTVS_FABIVS_MAXIMVS ♦ 2.2k • updated 2.2 years ago
swbarnes2 5.7k
1
Vote
2
Replies
420
Views
Is there any way to infer percentage from the branches in trajectories plotted in Monocle?
single-cell single cell monocle R trajectory
2.5 years ago
Batu • 150 • updated 2.2 years ago
leon.zhan • 0
1
Vote
1
Reply
461
Views
Job: Postdoc position in single-cell cancer genomics
scRNAseq cancer genomics single-cell rna-seq Job
2.2 years ago
Allegra Petti • 10 • updated 2.2 years ago
Chris Miller 20k
0
Votes
0
Replies
397
Views
Job: Bioinformaticist/Computational Biologist - Emory University, Atlanta, GA, USA
RNA-Seq single-cell Rep-Seq Job
2.2 years ago
amitupadhyay86 • 0 • updated 2.2 years ago
genomax 68k
1
Vote
1
Reply
492
Views
Merging single-cell RNA-seq from different platforms across different conditions
scRNAseq single-cell merging platforms
2.3 years ago
mBrio • 10 • updated 2.3 years ago
Minstein • 100
0
Votes
0
Replies
455
Views
Differential expression using Scran batch corrected data
RNA-Seq single-cell Scran Batch correction
2.3 years ago
baldissera152 • 0
0
Votes
1
Reply
790
Views
Smart-seq2 single-cell RNA-Seq
RNA-Seq Smart-seq2 single-cell
2.3 years ago
wangdp123 • 150 • updated 2.3 years ago
kristoffer.vittingseerup ♦ 1.8k
0
Votes
1
Reply
370
Views
newSCESet and SingleCellExperiment basic differences and TMM Normalization
RNA-Seq single-cell R
2.4 years ago
hkarakurt • 50
10
Votes
5
Replies
904
Views
How to append the cell barcode and UMI information to the fastq header in paired-end single-cell RNA-seq data?
rna-seq fastq sequence single-cell
2.5 years ago
sc243 • 10
3
Votes
5
Replies
569
Views
Adding optional tags to a BAM file
RNA-Seq bam sam single-cell awk
2.5 years ago
sc243 • 10
0
Votes
5
Replies
352
Views
How to make this specific "pileup" like plot?
ggplot2 R single-cell
2.5 years ago
vivekraiiitkgp • 50
0
Votes
0
Replies
317
Views
Job: Bioinformatician (Single Cell Analysis), Earlham Institute, Norwich, UK
next-gen single-cell bioinformatics Job
2.5 years ago
cschu181 ♦ 1.7k
3
Votes
2
Replies
684
Views
What is the reasonable proportion of zero counts in single-cell RNA-Seq data
rna-seq single-cell rna-seq single-cell sc-RNA
2.6 years ago
boyu93 • 10 • updated 2.6 years ago
spacemorrissey • 210
1
Vote
3
Replies
1.8k
Views
Why different tSNE plot with Seurat and Monocle if they'r using the same R package?
single-cell tsne R Seurat monocle
2.7 years ago
jgarces • 10 • updated 2.7 years ago
dppb05 • 70
5
Votes
3
Replies
2.4k
Views
What is the difference between single-cell RNA-Seq and typical RNA-Seq in terms of data analysis procedure
single-cell RNA-Seq
2.7 years ago
wangdp123 • 150 • updated 2.7 years ago
Devon Ryan 90k
6
Votes
6
Replies
1.3k
Views
How to add RG tag into the optional field in a BAM file
sequencing single-cell bam samtools
2.8 years ago
gundalav • 270 • updated 2.7 years ago
finswimmer 11k
7
Votes
8
Replies
1.2k
Views
lack of replicates in single-cell RNA-seq
RNA-Seq scRNA-seq single-cell
2.8 years ago
igor 7.7k • updated 2.8 years ago
Friederike 4.2k
3
Votes
1
Reply
1.6k
Views
Variant calling on single-cell data
variant single-cell SNP
3.2 years ago
vinvan • 50 • updated 2.8 years ago
oneillkza • 80
0
Votes
0
Replies
640
Views
Job: Bio informatician - Single cell RNA SEQ Analysis
RNA-Seq Bio-informatician sequencing Single-Cell Job
2.9 years ago
sandrina.evrard • 0
0
Votes
2
Replies
644
Views
Differential expression between two biological samples sequenced with single-cell RNA-seq with thousands of cells in each
single-cell rna-seq R differential expression
2.9 years ago
Naim.Mahi • 40
2
Votes
1
Reply
1.2k
Views
Regulatory Network Inference from Single-cell RNAseq Data
RNA-Seq single-cell gene regulatory network
3.0 years ago
whou • 0 • updated 3.0 years ago
genomax 68k
0
Votes
2
Replies
571
Views
Single-cell cluster : up- vs down-regulated marker genes
single-cell marker genes RNA-Seq cluster seurat
3.0 years ago
PR • 10 • updated 3.0 years ago
igor 7.7k
0
Votes
1
Reply
1.2k
Views
GSVA for single-cell marker genes
R RNA-Seq gsva single-cell
3.1 years ago
PR • 10 • updated 3.0 years ago
Biostar 20
0
Votes
2
Replies
491
Views
Having trouble using the SAFE clustering method
single-cell RNA-Seq SAFE clustering cluster
3.1 years ago
Chynoki • 0
0
Votes
0
Replies
676
Views
Job: Research Associate (Bioinformatics) Centre for Trophoblast Research, University of Cambridge, UK
RNA-Seq core-facility Epigenetics Single-cell Job
3.3 years ago
russellshamilton • 0
0
Votes
0
Replies
1.0k
Views
scRNA-seq: how to visualize SNN-Cliq clustering result
scRNAseq single-cell SNN Snn-cliq tsne
3.6 years ago
pacman • 50
0
Votes
1
Reply
620
Views
SCDE Package scde.error.models ERROR
R single-cell RNA-Seq
3.6 years ago
shg018 • 0 • updated 3.6 years ago
dfscruz • 0
2
Votes
2
Replies
1.0k
Views
Job: Postdoc in Machine Learning Methods for Single-Cell Data
postdoc single-cell machine-learning Job
3.9 years ago
lukas.kall • 40 • updated 3.8 years ago
nasbelyakova • 50
0
Votes
0
Replies
794
Views
Job: Postdoctoral researcher at Bioinformatics Unit, Turku Centre for Biotechnology
R sequencing single-cell omics Job
3.9 years ago
mirkka.ruotsalainen • 0
0
Votes
0
Replies
698
Views
News: Optimizing Single-cell RNA-sequencing Workflows, A webinar hosted by Takara Bio and Formulatrix
RNA-Seq single-cell microfluidics clontech News
4.0 years ago
thomas.rawlins • 0
5
Votes
4
Replies
3.6k
Views
Long Read Length, yet STAR says many reads too short
STAR RNA-Seq single-cell alignment
4.0 years ago
dec986 • 200 • updated 4.0 years ago
datascientist28 • 390
6
Votes
0
Replies
1.5k
Views
Tool: Control data for cross-contaminations on C1 ATAC-seq.
ATAC-seq single-cell data Tool
4.1 years ago
Charles Plessy ♦ 2.7k
0
Votes
0
Replies
725
Views
Published scRNA data with bechmarks?
rna-seq single-cell next-gen
4.2 years ago
Vivian • 0
7
Votes
14
Replies
998
Views
single-cell exome sequencing pipeline
SNP exom single-cell next-gen
4.4 years ago
F ♦ 3.4k
0
Votes
1
Reply
954
Views
One BioSample per single cell ?
single-cell transcriptome metadata
4.7 years ago
Charles Plessy ♦ 2.7k • updated 4.7 years ago
Biostar 20
20
Votes
4
Replies
3.8k
Views
Tutorial: Analysis of single-cell RNA-seq data
RNA-Seq single-cell Tutorial
4.7 years ago
Geparada ♦ 1.4k
3
Votes
0
Replies
2.4k
Views
Job: Postdoc in Computational Biology, Harvard Medical School
RNA-Seq ChIP-Seq R single-cell hi-c Job
4.7 years ago
peter.kharchenko • 30
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