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Showing : rna • reset
0
Votes
4
Replies
178
Views
bioinformatics tools to connect modifications on RNA to its structure
tool RNA RNA modifications RNA structure Tool
15 months ago
suneetamodekurty77 • 0
1
Vote
3
Replies
159
Views
Differential gene expression analysis of real-valued expression data of genes and individuals
gen-expression gene-expression RNA-Seq RNA
16 months ago
Davide Chicco • 80 • updated 16 months ago
h.mon 25k
1
Vote
2
Replies
191
Views
How to select only protein coding mRNAs from a really long list of ENSG IDS
ensg ensembl ids rna
16 months ago
brett.vanderwerff • 100
2
Votes
14
Replies
355
Views
Issue with replicating from a research paper-motifs
sequence RNA FASTA MEME motif
17 months ago
joshua.steier • 20 • updated 17 months ago
geek_y 9.7k
1
Vote
2
Replies
214
Views
How to use limma for a categorial outcome variable? Where outcome is the cohort status and predictor is gene expression.
next-gen RNA RNA-Seq limma
18 months ago
halo22 • 120 • updated 17 months ago
Biostar 20
0
Votes
1
Reply
159
Views
retrieve relative position of CDS start for every isoforme
rna isoforme
17 months ago
Florian Bernard • 50
3
Votes
8
Replies
292
Views
Folding RNA on python
python RNA folding
18 months ago
gprezza • 10 • updated 17 months ago
Joe 12k
0
Votes
0
Replies
174
Views
dot bracket to 2D structure
rna
18 months ago
hac00837 • 0 • updated 18 months ago
h.mon 25k
9
Votes
3
Replies
4.4k
Views
Statistical Distributions In Rna-Seq Data Analysis
statistics rna
8.5 years ago
Ngsnewbie • 360 • updated 18 months ago
Biostar 20
0
Votes
1
Reply
218
Views
How does RNA relative abundance relate to SNPs and eQTLs?
snp eQTL abundance RNA GTex
19 months ago
rattus8 • 40 • updated 19 months ago
geek_y 9.7k
4
Votes
4
Replies
409
Views
RNA-secondary structure prediction software (T-boxes, riboswitches and attenuators search)
T-box riboswitch attenuator RNA
19 months ago
natasha.sernova ♦ 3.5k
22
Votes
8
Replies
1.7k
Views
Tool: BioTuring Browser: Making single-cell sequencing data in published studies really accessible!
single cell sc-rna RNA-Seq rna Tool
2.0 years ago
sonpham • 560 • updated 19 months ago
Jennifer Pham • 290
0
Votes
1
Reply
176
Views
Output cmsearch Infernal
infernal cmsearch rna
19 months ago
ritmodasestrelas • 0
1
Vote
4
Replies
296
Views
Negative dataset selection
machine-learning sequence classification RNA DNA
20 months ago
Saad Khan • 330
0
Votes
2
Replies
268
Views
what do you mean by segment pairs
protein rna bioinformatics
20 months ago
a4appy23 • 10
2
Votes
2
Replies
858
Views
Getting RNA sequence from RNA-Seq reads; some questions
RNA-Seq SNP sequence rna
4.4 years ago
R.Blues • 80 • updated 20 months ago
Biostar 20
0
Votes
0
Replies
331
Views
how can I convert the "Dot-brocket" format of RNA's secondary structure to the "Shapiro" format ?
rna
21 months ago
e.roohparvar • 0
1
Vote
1
Reply
237
Views
Different questions about non-coding RNA, assemble genes and gene amplification
RNA
23 months ago
jesus-bn • 0 • updated 21 months ago
Biostar 20
1
Vote
1
Reply
218
Views
t-rna gene symbol nomenclature
gene name terminology rna
21 months ago
sacha ♦ 1.7k
1
Vote
3
Replies
852
Views
Best method to do clustering (sub-group) single cell RNA-Seq data?
RNA-Seq rna rna-seq
2.6 years ago
sudha • 20 • updated 22 months ago
kristoffer.vittingseerup ♦ 1.8k
2
Votes
2
Replies
446
Views
Detecting antisense RNA in unstranded RNA-Seq data
RNA-Seq antisense RNA
22 months ago
newbio17 • 10 • updated 22 months ago
caggtaagtat • 620
0
Votes
0
Replies
345
Views
Gene Co-Expression Analysis: Choosing the right Model
RNA R Gene
23 months ago
BELA • 0
0
Votes
0
Replies
270
Views
calculation of sequqence-structure features of miRNA
sequence gene rna mirna triplet features of mirna
23 months ago
pragyan.somi8 • 0
1
Vote
2
Replies
304
Views
How to convert MEME MOTIF to all potential sequences?
RNA meme motif sequences
23 months ago
Oo • 0 • updated 23 months ago
jared.andrews07 ♦ 2.4k
0
Votes
0
Replies
220
Views
RCAS Motif Discovery
RNA Motif Discovery
2.2 years ago
b.verhagen • 10 • updated 2.0 years ago
Biostar 20
1
Vote
8
Replies
390
Views
How do I predict consensus RNA structures?
RNA RNAforester mapping
2.0 years ago
jaqx008 • 40
13
Votes
6
Replies
4.8k
Views
Calculating Gene Densities From Rnaseq Data
rna visualization
9.4 years ago
Ahmetz • 60 • updated 2.0 years ago
erdiazval • 40
37
Votes
17
Replies
4.5k
Views
Identified Potential Non-Coding Rna, And Then?
sequence rna prediction
10.2 years ago
Michael Dondrup 46k • updated 2.1 years ago
RamRS 21k
2
Votes
1
Reply
1.6k
Views
TSS for lncRNAs from GENCODE
sequence RNA gencode
4.9 years ago
alex • 0 • updated 2.1 years ago
Biostar 20
2
Votes
3
Replies
356
Views
Are there any de novo assemblers which can handle (either) transcriptomic or genomic reads?
Assembly DNA RNA
2.2 years ago
maxwhjohn1988 • 70 • updated 2.2 years ago
Damian Kao 15k
0
Votes
1
Reply
318
Views
Alignment using secondary and tertiary features of DNA to make similarity matrix
R biopython alignment dna rna
2.2 years ago
goonerrn • 0 • updated 2.2 years ago
Biostar 20
41
Votes
10
Replies
14k
Views
The Difference Between Directional And Nondirectional Sequencing
non sequencing rna
8.7 years ago
Assa Yeroslaviz ♦ 1.2k • updated 2.2 years ago
julianasrinjuli • 0
8
Votes
12
Replies
475
Views
can lnc-RNA target coding RNA?
RNA lnc-RNA mRNA
2.3 years ago
ta_awwad • 210 • updated 2.2 years ago
EagleEye 6.4k
3
Votes
7
Replies
456
Views
Expression of specific genes between tumor and normal
RNA-Seq differential analysis r rna
2.2 years ago
Vasu • 330 • updated 2.2 years ago
Nicolas Rosewick 7.7k
0
Votes
6
Replies
574
Views
Subsampling procedure for differential analysis
RNA-Seq R differential analysis rna
2.2 years ago
Vasu • 330
16
Votes
12
Replies
3.1k
Views
Has Anyone Tried Rum For Aligning/Counting Illumina Rna-Seq Data?
rna alignment
9.2 years ago
Travis ♦ 2.8k • updated 2.3 years ago
Biostar 20
0
Votes
4
Replies
449
Views
Cluster RNA sequences from fasta alignment by identity threshold
sequences identity RNA clustering RNA alignment
2.4 years ago
filip7grudzien • 0 • updated 2.3 years ago
Biostar 20
2
Votes
5
Replies
1.8k
Views
RPKM to TPM conversion?
rpkm tpm conversion rna RNA-Seq
2.3 years ago
brieannsobieski • 0
0
Votes
0
Replies
1.1k
Views
ViennaRNA; partition function and probability in ensemble for suboptimal structures?
viennaRNA RNA simulation
5.5 years ago
Ali R. Vahdati • 190 • updated 2.3 years ago
Biostar 20
54
Votes
22
Replies
46k
Views
How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Sequences In A Single File
next-gen sequencing fasta rna r perl
9.0 years ago
Hamilton • 260 • updated 2.3 years ago
har-wradim • 20
4
Votes
2
Replies
372
Views
SNPs based on cDNA sequence could be artifacts of RNA editing
SNP RNA
2.3 years ago
salvatore.digiorgio • 10 • updated 2.3 years ago
Kevin Blighe 43k
0
Votes
1
Reply
368
Views
Salmon tool giving an error about the library type
RNA-Seq salmon alignment rna library
2.4 years ago
Vasu • 330
3
Votes
5
Replies
467
Views
Finding restriction sites when the gene is on the negative strand
dna rna strand
2.4 years ago
chahat_u • 110 • updated 2.4 years ago
Anima Mundi ♦ 2.4k
0
Votes
0
Replies
618
Views
Job: Postdoc in Bioinformatics within Neurodegenerative Diseases, Department of Veterinary and Animal Sciences, University of Copenhagen, Frederiksberg, D…
bioinformatics neurodegeneration RNA Job
2.4 years ago
coordinator • 0
0
Votes
3
Replies
361
Views
How to download genes and corresponding pdb files?
sequence rna
2.4 years ago
vipul.iitd12 • 0 • updated 2.4 years ago
Sishuo Wang • 170
0
Votes
0
Replies
334
Views
Base probabilities coumputed by partition function for big rna sequences alignment needed
partition function rna alignment
2.4 years ago
filip7grudzien • 0
0
Votes
0
Replies
347
Views
miRNA Target Prediction (online/offline tools)?
RNA miRNA
2.4 years ago
omer.k • 20
28
Votes
10
Replies
9.9k
Views
What Is The Relationship Between Rna And Protein Levels In Vivo?
rna protein
9.1 years ago
Burlappsack • 660 • updated 2.4 years ago
Biostar 20
0
Votes
0
Replies
537
Views
Job: Postdoc in RNA Bioinformatics and Systems Biology
bioinformatics RNA linux python Job
2.5 years ago
coordinator • 0
0
Votes
0
Replies
424
Views
RNA secondary structure interactive visualization with save
rna visualization
2.5 years ago
cmo • 50
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