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58 results • Page
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Showing :
pileup
•
reset
3
Votes
11
Replies
320
Views
samtools mpileup keeps making an empty file
samtools
pileup
2.0 years ago
James Reeve
• 80
• updated 2.0 years ago
gab
• 20
5
Votes
7
Replies
6.9k
Views
Pileup To Vcf Format
pileup
vcf
9.8 years ago
Pri
• 20
• updated 2.2 years ago
Mbillah
• 110
2
Votes
5
Replies
1.0k
Views
Popoolation variance-sliding.pl output shows only zero value
samtools
popoolation
pileup
Tajima's D
Tajima's Pi
3.5 years ago
bruseq
• 40
• updated 2.2 years ago
alex.zaccaron
• 0
1
Vote
4
Replies
1.0k
Views
Samtools 1.3 mpileup result < >
RNA-Seq
sequencing
next-gen
samtools
pileup
4.9 years ago
yanweng
• 30
• updated 2.3 years ago
RamRS
21k
0
Votes
3
Replies
2.2k
Views
Mapping Reads Back To Assembly Contigs To Generate Pileup
pileup
bwa
coverage
8.8 years ago
Sen
• 0
• updated 2.3 years ago
Biostar
20
7
Votes
3
Replies
1.2k
Views
Generating pileup from .bam file
genome
pileup
indels
2.7 years ago
ajuric101
• 20
1
Vote
1
Reply
296
Views
SRA tootkit to download pileup formats using SRR accessions
next-gen
sequencing
sratoolkit
pileup
2.8 years ago
Paul
• 80
0
Votes
0
Replies
356
Views
pileup vs. IGV insertion locations
pileup
igv
2.8 years ago
blur
• 110
0
Votes
0
Replies
478
Views
How to calculate standard deviation of coverage for each scaffold in a pileup file?
coverage
pileup
perl
sequencing
2.8 years ago
PollardMD
• 0
0
Votes
2
Replies
910
Views
Finding SNPs in population data: help with pipeline
SNP
population
pileup
genome
3.7 years ago
Alex
• 0
• updated 3.1 years ago
Pierre Lindenbaum
120k
8
Votes
8
Replies
5.6k
Views
Samtools Mpileup And Overlapping Paired-End Reads
pileup
paired-end
rna-seq
7.2 years ago
alpha2zee
• 100
• updated 3.2 years ago
Owen S.
• 340
0
Votes
1
Reply
1.5k
Views
Pysam read reference positions and sequence do not match
pysam
samtools
tview
pileup
3.3 years ago
rlorigro
• 0
• updated 3.2 years ago
Biostar
20
5
Votes
9
Replies
892
Views
Nucleotide coverage if >5 reads
alignment
sequence
pileup
3.3 years ago
Vca80553
• 0
• updated 3.2 years ago
Pierre Lindenbaum
120k
0
Votes
4
Replies
499
Views
Samtools pileup problem.
RNA-Seq
pileup
3.3 years ago
salvatore.digiorgio
• 10
4
Votes
3
Replies
884
Views
Samtools mpileup output: missing fields?
Samtools
RNAseq
Pileup
MPileup
3.4 years ago
cjaln
• 0
• updated 3.4 years ago
John Marshall
♦ 1.5k
1
Vote
4
Replies
904
Views
pileup format: what's the difference between upper and lower case?
samtools
pileup
3.7 years ago
blur
• 110
• updated 3.7 years ago
Devon Ryan
90k
0
Votes
1
Reply
647
Views
Filter pileup file for completeness
samtools
pileup
filter
completeness
3.8 years ago
AP
• 90
2
Votes
3
Replies
2.5k
Views
What does "pileup" mean in the context of MACS2 peak caller?
ChIP-Seq
pileup
macs2
3.8 years ago
ariel.balter
• 140
• updated 3.8 years ago
Santosh Anand
4.8k
1
Vote
3
Replies
2.3k
Views
filtering pileup file with samtools for SomaticSniper
SomaticSniper
SNP
samtools
pileup
5.3 years ago
TriS
♦ 3.8k
• updated 4.2 years ago
guangxujin
• 0
1
Vote
1
Reply
901
Views
Pileup format parsing difficulty
pileup
samtools
4.3 years ago
maheetha.b
• 60
• updated 4.3 years ago
John Marshall
♦ 1.5k
16
Votes
9
Replies
6.3k
Views
Genomic Coverage - Samtool's undocumented "depth" verses the poorly documented pileup.
samtools
pileup
mpileup
depth
coverage
6.5 years ago
John
12k
• updated 4.9 years ago
Shicheng Guo
♦ 7.5k
8
Votes
7
Replies
3.2k
Views
(samtools) Filtering and interpreting >100 QUAL scores
samtools
pileup
phred-scaled QUAL
vcf
5.0 years ago
umn_bist
• 320
• updated 5.0 years ago
Brice Sarver
♦ 2.6k
1
Vote
3
Replies
4.3k
Views
understanding pysam pileup()
pysam
pileup
5.1 years ago
geek_y
9.7k
0
Votes
2
Replies
2.1k
Views
Calculate nucleotide frequency for a position in a bam file using Bio::DB Perl module
myposts
perl
bioperl
pileup
5.2 years ago
Sameer Chavan
• 0
1
Vote
4
Replies
2.8k
Views
How To Pile Up Multiple Bed Files Into 1 File
bed
pileup
sam
bam
intersect
8.7 years ago
Hanfei Sun
• 60
• updated 5.3 years ago
Biostar
20
1
Vote
1
Reply
4.1k
Views
Masked Or Unmasked Dna Reference For Sam2Vcf.Pl
samtools
pileup
vcf
9.7 years ago
Pi
• 510
• updated 5.3 years ago
Biostar
20
3
Votes
2
Replies
1.8k
Views
Samtools mpileup not providing correct count info
samtools
mpileup
pileup
simulation
5.5 years ago
jgbradley1
• 100
5
Votes
5
Replies
1.7k
Views
Rsamtools::pileup gives inconsistent number of reads
rsamtools
pileup
5.9 years ago
inesdesantiago
• 160
3
Votes
4
Replies
3.6k
Views
Is the MACS pileup output normalized
macs
normalization
pileup
6.3 years ago
ivoryec
• 60
3
Votes
4
Replies
2.8k
Views
meaning of new symbols in samtools mpileup format?
snp
samtools
pileup
HTSlib
6.4 years ago
Dejian
♦ 1.3k
• updated 6.4 years ago
Devon Ryan
90k
0
Votes
0
Replies
1.5k
Views
Bio-SamTools pileup method
BioPerl
Bio-SamTools
PileUp
6.5 years ago
Max Ivon
• 110
0
Votes
0
Replies
1.7k
Views
Calculating Mutation Rate Using Mpileup Files
mpileup
mutation
pileup
samtools
6.9 years ago
QVINTVS_FABIVS_MAXIMVS
♦ 2.2k
2
Votes
11
Replies
1.6k
Views
Samtools Pileup Of Millions Of Reads From A Single Amplicon
samtools
pileup
sequencing
6.9 years ago
Sebastian
• 10
• updated 6.9 years ago
Christian
♦ 2.8k
4
Votes
4
Replies
3.2k
Views
How To Generate A Consensus Sequence On The Galaxy Platform
galaxy
pileup
7.5 years ago
thelittledoctor
• 0
• updated 7.2 years ago
Biostar
20
5
Votes
3
Replies
2.5k
Views
Sra-Pileup Question
pileup
7.2 years ago
Sergei Lebedev
• 30
• updated 7.2 years ago
Matt Shirley
9.0k
2
Votes
5
Replies
1.8k
Views
Imitate Pileup Format
samtools
mpileup
pileup
7.4 years ago
Lee Katz
♦ 2.9k
• updated 7.4 years ago
polarise
• 380
3
Votes
3
Replies
1.6k
Views
What Does The N Stands For In Pileup File In Next Generation Sequencing?
ngs
pileup
7.5 years ago
kindlychung
• 40
• updated 7.5 years ago
venkateshr89
• 690
1
Vote
3
Replies
1.6k
Views
Calculating Coverage From Pileup File To Find Gene Duplication Events
pileup
coverage
gene
8.2 years ago
thecuriousbiologist
• 430
• updated 8.2 years ago
Joseph Hughes
♦ 2.7k
19
Votes
9
Replies
7.9k
Views
Why Does Mpileup Skip My Mutation ?
mpileup
pileup
samtools
next-gen
sequencing
8.5 years ago
Pierre Lindenbaum
120k
3
Votes
6
Replies
1.6k
Views
What Are The > Signs In Samtools Pileup Strings?
samtools
pileup
8.5 years ago
Z Z
• 10
• updated 8.5 years ago
Pierre Lindenbaum
120k
0
Votes
1
Reply
2.1k
Views
Pileup Haploid Base Calling, Creating Consensus Sequence
samtools
pileup
8.6 years ago
Lee Katz
♦ 2.9k
1
Vote
4
Replies
2.9k
Views
How To Switch From Samtools Pileup To Mpileup
pileup
mpileup
samtools
8.8 years ago
groundcover
• 10
• updated 8.8 years ago
Rlong
• 340
1
Vote
1
Reply
1.5k
Views
Rsamtools - Applypileups
samtools
r
pileup
mpileup
8.8 years ago
Donald
• 0
• updated 8.8 years ago
Sukhdeep Singh
9.8k
2
Votes
8
Replies
3.7k
Views
Samtools Pileup Got Really Slow After I Switched To Stampy For Mapping
pileup
samtools
bwa
8.9 years ago
Applet
• 130
• updated 8.9 years ago
Swbarnes2
♦ 1.5k
1
Vote
8
Replies
3.8k
Views
Samtools Pileup Format
pileup
format
samtools
9.1 years ago
Joanne Lim
• 20
• updated 9.1 years ago
Chris Miller
20k
2
Votes
1
Reply
1.7k
Views
My Pileup File Doesn'T Match The Documented Format? What Are These Columns?
samtools
pileup
mpileup
9.4 years ago
Applet
• 130
• updated 9.4 years ago
Pierre Lindenbaum
120k
7
Votes
5
Replies
3.7k
Views
Is It Possible To Split And Merge Bam To Pileup Conversion Process?
samtools
gatk
pileup
bam
9.4 years ago
Prateek
♦ 1.0k
• updated 9.4 years ago
Swbarnes2
♦ 1.5k
37
Votes
5
Replies
18k
Views
Calculate Exon Coverage Using Samtools
pileup
coverage
samtools
9.5 years ago
Cdiez
• 150
• updated 9.5 years ago
Aaronquinlan
11k
9
Votes
1
Reply
1.9k
Views
Vcf Vs Sam Output
mpileup
pileup
vcf
sam
9.5 years ago
Tiffani
• 140
• updated 9.5 years ago
Istvan Albert
87k
2
Votes
6
Replies
2.9k
Views
Samtools Header From A Bacterial Genome Ba File
samtools
pileup
bacteria
bam
9.6 years ago
Sakti
• 370
• updated 9.6 years ago
Drio
• 910
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