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Showing : pileup • reset
3
Votes
11
Replies
315
Views
samtools mpileup keeps making an empty file
samtools pileup
17 months ago
James Reeve • 80 • updated 17 months ago
gab • 20
5
Votes
7
Replies
6.9k
Views
Pileup To Vcf Format
pileup vcf
9.1 years ago
Pri • 20 • updated 19 months ago
Mbillah • 110
2
Votes
5
Replies
999
Views
Popoolation variance-sliding.pl output shows only zero value
samtools popoolation pileup Tajima's D Tajima's Pi
2.9 years ago
bruseq • 40 • updated 19 months ago
alex.zaccaron • 0
1
Vote
4
Replies
1.0k
Views
Samtools 1.3 mpileup result < >
RNA-Seq sequencing next-gen samtools pileup
4.3 years ago
yanweng • 30 • updated 20 months ago
RamRS 21k
0
Votes
3
Replies
2.2k
Views
Mapping Reads Back To Assembly Contigs To Generate Pileup
pileup bwa coverage
8.2 years ago
Sen • 0 • updated 20 months ago
Biostar 20
7
Votes
3
Replies
1.2k
Views
Generating pileup from .bam file
genome pileup indels
2.0 years ago
ajuric101 • 20
1
Vote
1
Reply
292
Views
SRA tootkit to download pileup formats using SRR accessions
next-gen sequencing sratoolkit pileup
2.1 years ago
Paul • 80
0
Votes
0
Replies
353
Views
pileup vs. IGV insertion locations
pileup igv
2.2 years ago
blur • 110
0
Votes
0
Replies
474
Views
How to calculate standard deviation of coverage for each scaffold in a pileup file?
coverage pileup perl sequencing
2.2 years ago
PollardMD • 0
0
Votes
2
Replies
904
Views
Finding SNPs in population data: help with pipeline
SNP population pileup genome
3.1 years ago
Alex • 0 • updated 2.5 years ago
Pierre Lindenbaum 120k
8
Votes
8
Replies
5.6k
Views
Samtools Mpileup And Overlapping Paired-End Reads
pileup paired-end rna-seq
6.5 years ago
alpha2zee • 100 • updated 2.5 years ago
Owen S. • 340
0
Votes
1
Reply
1.5k
Views
Pysam read reference positions and sequence do not match
pysam samtools tview pileup
2.6 years ago
rlorigro • 0 • updated 2.6 years ago
Biostar 20
5
Votes
9
Replies
884
Views
Nucleotide coverage if >5 reads
alignment sequence pileup
2.6 years ago
Vca80553 • 0 • updated 2.6 years ago
Pierre Lindenbaum 120k
0
Votes
4
Replies
495
Views
Samtools pileup problem.
RNA-Seq pileup
2.7 years ago
salvatore.digiorgio • 10
4
Votes
3
Replies
881
Views
Samtools mpileup output: missing fields?
Samtools RNAseq Pileup MPileup
2.7 years ago
cjaln • 0 • updated 2.7 years ago
John Marshall ♦ 1.5k
1
Vote
4
Replies
900
Views
pileup format: what's the difference between upper and lower case?
samtools pileup
3.0 years ago
blur • 110 • updated 3.0 years ago
Devon Ryan 90k
0
Votes
1
Reply
638
Views
Filter pileup file for completeness
samtools pileup filter completeness
3.1 years ago
AP • 90
2
Votes
3
Replies
2.5k
Views
What does "pileup" mean in the context of MACS2 peak caller?
ChIP-Seq pileup macs2
3.2 years ago
ariel.balter • 140 • updated 3.2 years ago
Santosh Anand 4.8k
1
Vote
3
Replies
2.3k
Views
filtering pileup file with samtools for SomaticSniper
SomaticSniper SNP samtools pileup
4.7 years ago
TriS ♦ 3.8k • updated 3.6 years ago
guangxujin • 0
1
Vote
1
Reply
897
Views
Pileup format parsing difficulty
pileup samtools
3.7 years ago
maheetha.b • 60 • updated 3.7 years ago
John Marshall ♦ 1.5k
16
Votes
9
Replies
6.3k
Views
Genomic Coverage - Samtool's undocumented "depth" verses the poorly documented pileup.
samtools pileup mpileup depth coverage
5.9 years ago
John 12k • updated 4.3 years ago
Shicheng Guo ♦ 7.5k
8
Votes
7
Replies
3.2k
Views
(samtools) Filtering and interpreting >100 QUAL scores
samtools pileup phred-scaled QUAL vcf
4.4 years ago
umn_bist • 320 • updated 4.4 years ago
Brice Sarver ♦ 2.6k
1
Vote
3
Replies
4.3k
Views
understanding pysam pileup()
pysam pileup
4.4 years ago
geek_y 9.7k
0
Votes
2
Replies
2.1k
Views
Calculate nucleotide frequency for a position in a bam file using Bio::DB Perl module
myposts perl bioperl pileup
4.6 years ago
Sameer Chavan • 0
1
Vote
4
Replies
2.8k
Views
How To Pile Up Multiple Bed Files Into 1 File
bed pileup sam bam intersect
8.1 years ago
Hanfei Sun • 60 • updated 4.6 years ago
Biostar 20
1
Vote
1
Reply
4.1k
Views
Masked Or Unmasked Dna Reference For Sam2Vcf.Pl
samtools pileup vcf
9.0 years ago
Pi • 510 • updated 4.7 years ago
Biostar 20
3
Votes
2
Replies
1.8k
Views
Samtools mpileup not providing correct count info
samtools mpileup pileup simulation
4.8 years ago
jgbradley1 • 100
5
Votes
5
Replies
1.7k
Views
Rsamtools::pileup gives inconsistent number of reads
rsamtools pileup
5.2 years ago
inesdesantiago • 160
3
Votes
4
Replies
3.6k
Views
Is the MACS pileup output normalized
macs normalization pileup
5.7 years ago
ivoryec • 60
3
Votes
4
Replies
2.8k
Views
meaning of new symbols in samtools mpileup format?
snp samtools pileup HTSlib
5.8 years ago
Dejian ♦ 1.3k • updated 5.8 years ago
Devon Ryan 90k
0
Votes
0
Replies
1.5k
Views
Bio-SamTools pileup method
BioPerl Bio-SamTools PileUp
5.8 years ago
Max Ivon • 110
0
Votes
0
Replies
1.7k
Views
Calculating Mutation Rate Using Mpileup Files
mpileup mutation pileup samtools
6.3 years ago
QVINTVS_FABIVS_MAXIMVS ♦ 2.2k
2
Votes
11
Replies
1.6k
Views
Samtools Pileup Of Millions Of Reads From A Single Amplicon
samtools pileup sequencing
6.3 years ago
Sebastian • 10 • updated 6.3 years ago
Christian ♦ 2.8k
4
Votes
4
Replies
3.2k
Views
How To Generate A Consensus Sequence On The Galaxy Platform
galaxy pileup
6.9 years ago
thelittledoctor • 0 • updated 6.6 years ago
Biostar 20
5
Votes
3
Replies
2.5k
Views
Sra-Pileup Question
pileup
6.6 years ago
Sergei Lebedev • 30 • updated 6.6 years ago
Matt Shirley 9.0k
2
Votes
5
Replies
1.8k
Views
Imitate Pileup Format
samtools mpileup pileup
6.8 years ago
Lee Katz ♦ 2.9k • updated 6.8 years ago
polarise • 380
3
Votes
3
Replies
1.5k
Views
What Does The N Stands For In Pileup File In Next Generation Sequencing?
ngs pileup
6.9 years ago
kindlychung • 40 • updated 6.9 years ago
venkateshr89 • 690
1
Vote
3
Replies
1.6k
Views
Calculating Coverage From Pileup File To Find Gene Duplication Events
pileup coverage gene
7.5 years ago
thecuriousbiologist • 430 • updated 7.5 years ago
Joseph Hughes ♦ 2.7k
19
Votes
9
Replies
7.9k
Views
Why Does Mpileup Skip My Mutation ?
mpileup pileup samtools next-gen sequencing
7.9 years ago
Pierre Lindenbaum 120k
3
Votes
6
Replies
1.6k
Views
What Are The > Signs In Samtools Pileup Strings?
samtools pileup
7.9 years ago
Z Z • 10 • updated 7.9 years ago
Pierre Lindenbaum 120k
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