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Showing : parallel • reset
2
Votes
5
Replies
1.2k
Views
How about my parallel bwa+gatk pipeline?
2 Votes | 5 Replies
2.1 years ago bluemonster0808 • 40 • updated 6 months ago Charles Warden 6.8k
0
Votes
3
Replies
92
Views
Speed up psiblast of 11k alignments
0 Votes | 3 Replies
6 months ago fhsantanna • 440
0
Votes
1
Reply
124
Views
RepeatModeler contig size filter and parallelization
0 Votes | 1 Reply
8 months ago Anand Rao • 210
3
Votes
4
Replies
775
Views
Parallel for bwa mem - problem with -R argument for ID and SM
3 Votes | 4 Replies
21 months ago Korsocius • 110 • updated 9 months ago ATpoint 17k
314
Votes
78
Replies
109k
Views
30 follow
Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
314 Votes | 78 Replies
9 months ago ole.tange ♦ 3.4k
1
Vote
7
Replies
276
Views
Snowfall Parallelisation to compute Correlation Matrix
1 Vote | 7 Replies
9 months ago vincentpailler • 50
5
Votes
3
Replies
312
Views
Best approach for parallelizing bwa mem over multiple CPUs
5 Votes | 3 Replies
10 months ago olikidrod • 0 • updated 10 months ago genomax 68k
7
Votes
10
Replies
1.7k
Views
6 follow
trying to use gnu parallel and blast
7 Votes | 10 Replies
2.5 years ago pablo61991 • 70 • updated 12 months ago Giuseppe • 0
2
Votes
2
Replies
1.3k
Views
GATK: -nct and -nt
2 Votes | 2 Replies
2.7 years ago fire_water • 80 • updated 12 months ago nick.carleson • 10
12
Votes
0
Replies
529
Views
Tool: Book: GNU Parallel 2018 - for beginners and advanced users
12 Votes | 0 Replies
13 months ago ole.tange ♦ 3.4k
14
Votes
17
Replies
3.9k
Views
8 follow
Parallel Computing With Key/Value Stores (Multiple Writes)
14 Votes | 17 Replies
8.7 years ago Sequencegeek • 740 • updated 15 months ago amirouche.boubekki • 10
10
Votes
2
Replies
3.9k
Views
Bwa: Number Of Threads
10 Votes | 2 Replies
9.5 years ago Pierre Lindenbaum 120k • updated 15 months ago RamRS 21k
3
Votes
16
Replies
1.7k
Views
How to let WGCNA use multiple cores
3 Votes | 16 Replies
2.6 years ago syrttgump • 30 • updated 16 months ago yplee614 • 0
3
Votes
13
Replies
1.2k
Views
Trim_galore on multiple fast.qz files: syntax problem
3 Votes | 13 Replies
17 months ago m93 • 150
2
Votes
2
Replies
431
Views
Are there any GNU parallel or similar Shell/Bash code examples on how to run Snap and BWA aligners on a batch of paired .fastq files?
2 Votes | 2 Replies
20 months ago england_bioinformatics_team • 20 • updated 20 months ago ATpoint 17k
2
Votes
3
Replies
495
Views
Are there any working GNU parallel or similar Shell code examples on how to run Pilon, Prokka, VT and Snpeff tools on a batch of input files?
2 Votes | 3 Replies
20 months ago england_bioinformatics_team • 20 • updated 20 months ago jrj.healey 12k
4
Votes
2
Replies
635
Views
Off topic: How to parallel task in bash elegantly?
4 Votes | 2 Replies
20 months ago wang.yiguan • 30 • updated 20 months ago WouterDeCoster 39k
5
Votes
9
Replies
3.1k
Views
Using parallel with Mem
5 Votes | 9 Replies
5.6 years ago always_learning • 970 • updated 21 months ago Korsocius • 110
8
Votes
2
Replies
592
Views
Running assemblies in parallel
8 Votes | 2 Replies
22 months ago marit.hetland • 30 • updated 22 months ago jrj.healey 12k
0
Votes
1
Reply
376
Views
How to apply bedtools intersect function with GNU parallel for bacth BED file comparison?
0 Votes | 1 Reply
22 months ago texaswhiskey1969 • 0 • updated 22 months ago ATpoint 17k
0
Votes
2
Replies
472
Views
How to rewrite convert2bed function from BEDOps using GNU parallel for batch processing?
0 Votes | 2 Replies
22 months ago texaswhiskey1969 • 0 • updated 22 months ago jean.elbers ♦ 1.1k
0
Votes
2
Replies
451
Views
Off topic: Are there any code samples on how to use Prokka annotator with GNU parallel?
0 Votes | 2 Replies
23 months ago hockeytoronto2018 • 0
2
Votes
3
Replies
759
Views
Why can't I use a GRanges txDb with clusterMap function? (as input or output)
2 Votes | 3 Replies
23 months ago jhanks1981 • 0
2
Votes
2
Replies
546
Views
Paralellize samtools piped with awk
2 Votes | 2 Replies
2.1 years ago Korsocius • 110
0
Votes
2
Replies
688
Views
How to increase the speed of miRanda target prediction program?
0 Votes | 2 Replies
2.1 years ago Vijay Lakhujani 4.1k
4
Votes
3
Replies
571
Views
Has anyone tried to run SNPEff, Bedtools or Prokka with GNU parallel or a similar batch engine?
4 Votes | 3 Replies
2.1 years ago bioinformatics_bel • 20 • updated 2.1 years ago WouterDeCoster 39k
5
Votes
0
Replies
780
Views
Tutorial: Installing multiprocessor-capable MEME to work with a Slurm job scheduler environment
5 Votes | 0 Replies
2.2 years ago Alex Reynolds 28k
0
Votes
2
Replies
566
Views
What platform similar to Galaxy can handle multiple batch processing of bacterial genomes, mutation profiling and GWAS?
0 Votes | 2 Replies
2.4 years ago bioinform • 20 • updated 2.4 years ago colindaven ♦ 1.3k
13
Votes
11
Replies
1.0k
Views
6 follow
Is it possible to run variant calling software in parallel, are there any Shell and Python/R code examples available?
13 Votes | 11 Replies
2.4 years ago bioinform • 20 • updated 2.4 years ago ivivek_ngs ♦ 4.8k
2
Votes
3
Replies
627
Views
how to run obisplit in parallel
2 Votes | 3 Replies
2.5 years ago Roman Luštrik • 70
5
Votes
4
Replies
1.5k
Views
parse error with samtools
5 Votes | 4 Replies
2.8 years ago a.rex • 190
2
Votes
4
Replies
1.0k
Views
Perl::ForkManager does not speed up ATCG calculation
2 Votes | 4 Replies
2.9 years ago BioGeek • 140 • updated 2.9 years ago RamRS 21k
0
Votes
0
Replies
768
Views
PASTEC repeat classification software (part of REPET) help needed
0 Votes | 0 Replies
2.9 years ago mcsimenc • 10
2
Votes
1
Reply
920
Views
Why trim_galore don't have parallel mode?
2 Votes | 1 Reply
3.0 years ago Shicheng Guo ♦ 7.5k
5
Votes
2
Replies
1.4k
Views
Parallelizing MAFFT alignment of multiple FASTA files
5 Votes | 2 Replies
3.3 years ago ropolocan • 520
3
Votes
7
Replies
1.2k
Views
parallel program for running a command for several files
3 Votes | 7 Replies
3.4 years ago prasoon.agarwal • 10 • updated 3.4 years ago Asaf 5.6k
8
Votes
5
Replies
834
Views
BLASTing very many 10-mers to human genome
8 Votes | 5 Replies
3.5 years ago sor.hub.lennart • 10 • updated 3.5 years ago 5heikki 8.4k
0
Votes
2
Replies
760
Views
Off topic: Specify a different temporary file directory in SGE
0 Votes | 2 Replies
3.6 years ago san.san • 90
31
Votes
21
Replies
2.2k
Views
Job Manager to parallelize otherwise consecutive bash scripts..?
31 Votes | 21 Replies
3.9 years ago John 12k • updated 3.9 years ago ole.tange ♦ 3.4k
4
Votes
5
Replies
1.8k
Views
How to use BBMap for aligning a set of .fastq files?
4 Votes | 5 Replies
3.9 years ago usgenome2018 • 30 • updated 3.9 years ago Matt Shirley 9.0k
88 results • Page 1 of 3
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Answer: test question 1
Answer: test question 1
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New test post with the AJAX system
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A: Which Are The Best Programming Languages For A Bioinformatician?
A: Which Are The Best Programming Languages For A Bioinformatician?
Answer: Which Are The Best Programming Languages For A Bioinformatician?
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Answer: " testing dfg " by Natay Aberra 0
testing the autocomplete with mentioned users @Natay-Aberra @natay
Comment: " testing dfg " by Natay Aberra 0
Thanks a lot!
Comment: " testing dfg " by RamRS 21k
Drag and drop is frigging ***AWESOME***
Answer: " testing dfg " by Natay Aberra 0
Hello, test drag and drop of comments
Comment: " testing dfg " by RamRS 21k
Testing twitter embedding: https://www.twitter.com/statnews/status/656174802911129600 https://twitter.com/statnews/status/660506539762057…
Answer: test question 1 by Linda • 20
more than 10 characters
Comment: Which Are The Best Programming Languages For A Bioinformatician? by Digital • 0
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Comment: " testing dfg " by RamRS 21k
Testing highlighting functionality. Using `<span style="background-color: #FFFF00">`: <span style="background-color: #FFFF00">Span trial</…
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Testing <u>underline</u> functionality.
Comment: " testing dfg " by RamRS 21k
Testing comment with parentheses in URL: (this URL: https://www.ncbi.nlm.nih.gov/search/all/?term=BRCA1%20AND%20(Human%20OR%20Mouse))
Comment: get gene biotype for hg38 refseq by Natay Aberra 0
test the bumping
Comment: get gene biotype for hg38 refseq by genomax 68k
http://test.biostars.org/accounts/profile/2/ http://test.biostars.org/p/34/
Comment: New test post with the AJAX system by Natay Aberra 0
Yeah we will probably end up doing that.
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/accounts/profile/18713/ http://test.biostars.org/p/p371267/#p371295 test the bumping
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/p/p371285/ http://test.biostars.org/accounts/profile/user-2/
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