Biostar Beta. Not for public use.
Limit to: all time
all time today this week this month this year
84 results • Page 1 of 3
Sort by: Rank
Rank Views Votes Replies
Showing : parallel • reset
2
Votes
5
Replies
1.2k
Views
How about my parallel bwa+gatk pipeline?
2 Votes | 5 Replies
gatk parallel pipeline ngs
2.4 years ago
bluemonster0808 • 40 • updated 10 months ago
Charles Warden 6.8k
0
Votes
3
Replies
110
Views
Speed up psiblast of 11k alignments
0 Votes | 3 Replies
psiblast parallel
10 months ago
fhsantanna • 440
0
Votes
1
Reply
137
Views
RepeatModeler contig size filter and parallelization
0 Votes | 1 Reply
RepeatModeler Contig length Parallel
12 months ago
Anand Rao • 210
3
Votes
4
Replies
791
Views
Parallel for bwa mem - problem with -R argument for ID and SM
3 Votes | 4 Replies
parallel alignment bwa
2.1 years ago
Korsocius • 110 • updated 12 months ago
ATpoint 17k
314
Votes
78
Replies
109k
Views
Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
314 Votes | 78 Replies
tools parallel next-gen ngs Tool
12 months ago
ole.tange ♦ 3.4k
1
Vote
7
Replies
282
Views
Snowfall Parallelisation to compute Correlation Matrix
1 Vote | 7 Replies
snowfall parallel
13 months ago
vincentpailler • 50
5
Votes
3
Replies
326
Views
Best approach for parallelizing bwa mem over multiple CPUs
5 Votes | 3 Replies
bwa hpc parallel
14 months ago
olikidrod • 0 • updated 14 months ago
genomax 68k
7
Votes
10
Replies
1.7k
Views
trying to use gnu parallel and blast
7 Votes | 10 Replies
blast parallel gnu parallel blastx optimization
2.8 years ago
pablo61991 • 70 • updated 16 months ago
Giuseppe • 0
2
Votes
2
Replies
1.3k
Views
GATK: -nct and -nt
2 Votes | 2 Replies
gatk parallel
3.0 years ago
fire_water • 80 • updated 16 months ago
nick.carleson • 10
12
Votes
0
Replies
536
Views
Book: GNU Parallel 2018 - for beginners and advanced users
12 Votes | 0 Replies
tool ngs parallel Tool
17 months ago
ole.tange ♦ 3.4k
14
Votes
17
Replies
3.9k
Views
Parallel Computing With Key/Value Stores (Multiple Writes)
14 Votes | 17 Replies
parallel database
9.0 years ago
Sequencegeek • 740 • updated 18 months ago
amirouche.boubekki • 10
10
Votes
2
Replies
3.9k
Views
Bwa: Number Of Threads
10 Votes | 2 Replies
bwa next-gen sequencing parallel hardware
9.8 years ago
Pierre Lindenbaum 120k • updated 18 months ago
RamRS 21k
3
Votes
16
Replies
1.7k
Views
How to let WGCNA use multiple cores
3 Votes | 16 Replies
WGCNA multe-thread parallel
2.9 years ago
syrttgump • 30 • updated 20 months ago
yplee614 • 0
3
Votes
13
Replies
1.2k
Views
Trim_galore on multiple fast.qz files: syntax problem
3 Votes | 13 Replies
nsg trim_galore gnu parallel
21 months ago
m93 • 150
2
Votes
2
Replies
447
Views
Are there any GNU parallel or similar Shell/Bash code examples on how to run Snap and BWA aligners on a batch of paired .fastq files?
2 Votes | 2 Replies
gnu parallel shell snap bwa
23 months ago
england_bioinformatics_team • 20 • updated 23 months ago
ATpoint 17k
2
Votes
3
Replies
506
Views
Are there any working GNU parallel or similar Shell code examples on how to run Pilon, Prokka, VT and Snpeff tools on a batch of input files?
2 Votes | 3 Replies
gnu shell parallel prokka snpeff
23 months ago
england_bioinformatics_team • 20 • updated 23 months ago
Joe 12k
5
Votes
9
Replies
3.1k
Views
Using parallel with Mem
5 Votes | 9 Replies
mem BWA Parallel
5.9 years ago
always_learning • 970 • updated 2.1 years ago
Korsocius • 110
8
Votes
2
Replies
595
Views
Running assemblies in parallel
8 Votes | 2 Replies
parallel Assembly fastq
2.1 years ago
marit.hetland • 30 • updated 2.1 years ago
Joe 12k
0
Votes
1
Reply
380
Views
How to apply bedtools intersect function with GNU parallel for bacth BED file comparison?
0 Votes | 1 Reply
bedtools parallel intersection
2.2 years ago
texaswhiskey1969 • 0 • updated 2.2 years ago
ATpoint 17k
0
Votes
2
Replies
481
Views
How to rewrite convert2bed function from BEDOps using GNU parallel for batch processing?
0 Votes | 2 Replies
convert2bed bedops parallel
2.2 years ago
texaswhiskey1969 • 0 • updated 2.2 years ago
jean.elbers ♦ 1.1k
2
Votes
3
Replies
770
Views
Why can't I use a GRanges txDb with clusterMap function? (as input or output)
2 Votes | 3 Replies
R genomicFeatures parallel clusterMap
2.2 years ago
jhanks1981 • 0
2
Votes
2
Replies
553
Views
Paralellize samtools piped with awk
2 Votes | 2 Replies
parallel samtools
2.4 years ago
Korsocius • 110
0
Votes
2
Replies
695
Views
How to increase the speed of miRanda target prediction program?
0 Votes | 2 Replies
miranada mirna parallel
2.4 years ago
Vijay Lakhujani 4.1k
4
Votes
3
Replies
584
Views
Has anyone tried to run SNPEff, Bedtools or Prokka with GNU parallel or a similar batch engine?
4 Votes | 3 Replies
gnu parallel snpeff bedtools prokka
2.4 years ago
bioinformatics_bel • 20 • updated 2.4 years ago
WouterDeCoster 39k
5
Votes
0
Replies
790
Views
Installing multiprocessor-capable MEME to work with a Slurm job scheduler environment
5 Votes | 0 Replies
meme slurm parallelization parallel Tutorial
2.5 years ago
Alex Reynolds 28k
0
Votes
2
Replies
572
Views
What platform similar to Galaxy can handle multiple batch processing of bacterial genomes, mutation profiling and GWAS?
0 Votes | 2 Replies
galaxy platform parallel mutation profiling gwas
2.7 years ago
bioinform • 20 • updated 2.7 years ago
colindaven ♦ 1.3k
13
Votes
11
Replies
1.0k
Views
Is it possible to run variant calling software in parallel, are there any Shell and Python/R code examples available?
13 Votes | 11 Replies
parallel vcf variant calling
2.7 years ago
bioinform • 20 • updated 2.7 years ago
ivivek_ngs ♦ 4.8k
2
Votes
3
Replies
642
Views
how to run obisplit in parallel
2 Votes | 3 Replies
obitools obisplit parallel linux fastq
2.8 years ago
Roman Luštrik • 70
5
Votes
4
Replies
1.5k
Views
parse error with samtools
5 Votes | 4 Replies
samtools linux parallel
3.1 years ago
a.rex • 190
2
Votes
4
Replies
1.0k
Views
Perl::ForkManager does not speed up ATCG calculation
2 Votes | 4 Replies
Perl Parallel Speed ForkManager
3.2 years ago
BioGeek • 140 • updated 3.2 years ago
RamRS 21k
0
Votes
0
Replies
776
Views
PASTEC repeat classification software (part of REPET) help needed
0 Votes | 0 Replies
repeat classification repet pastec parallel torque
3.2 years ago
mcsimenc • 10
2
Votes
1
Reply
930
Views
Why trim_galore don't have parallel mode?
2 Votes | 1 Reply
trim_galore adaptor parallel
3.3 years ago
Shicheng Guo ♦ 7.5k
5
Votes
2
Replies
1.4k
Views
Parallelizing MAFFT alignment of multiple FASTA files
5 Votes | 2 Replies
alignment mafft parallel
3.6 years ago
ropolocan • 520
3
Votes
7
Replies
1.2k
Views
parallel program for running a command for several files
3 Votes | 7 Replies
parallel Forum
3.7 years ago
prasoon.agarwal • 10 • updated 3.7 years ago
Asaf 5.6k
8
Votes
5
Replies
842
Views
BLASTing very many 10-mers to human genome
8 Votes | 5 Replies
cloud parallel blast
3.8 years ago
sor.hub.lennart • 10 • updated 3.8 years ago
5heikki 8.4k
31
Votes
21
Replies
2.2k
Views
Job Manager to parallelize otherwise consecutive bash scripts..?
31 Votes | 21 Replies
parallel xargs bash
4.2 years ago
John 12k • updated 4.2 years ago
ole.tange ♦ 3.4k
4
Votes
5
Replies
1.8k
Views
How to use BBMap for aligning a set of .fastq files?
4 Votes | 5 Replies
bbmap bash parallel
4.2 years ago
usgenome2018 • 30 • updated 4.2 years ago
Matt Shirley 9.0k
0
Votes
3
Replies
2.1k
Views
How to download multiple expression datasets from EBI database using ArrayExpress
0 Votes | 3 Replies
ebi microarray parallel
4.4 years ago
deepue • 110 • updated 4.4 years ago
genomax 68k
7
Votes
4
Replies
1.9k
Views
Running multiple instances of STAR in one directory
7 Votes | 4 Replies
RNA-Seq STAR galaxy parallel
4.5 years ago
Michael Dondrup 46k
3
Votes
14
Replies
1.8k
Views
Distributed (parallel) BLAST. Calculating E-values and other statistics params.
3 Votes | 14 Replies
E-value BLAST Distributed Parallel bit-score
4.5 years ago
vladimir.khramkov • 10 • updated 4.5 years ago
Damian Kao 15k
84 results • Page 1 of 3
Recent Votes
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Recent Locations • All
University Park, 1 hour ago
Japan, 11 hours ago
India, 15 hours ago
Germany, 23 hours ago
United States, 1 day ago
Recent Awards • All
Appreciated to lieven.sterck 5.1k
Commentator to maegsul • 140
Appreciated to Sej Modha 4.2k
Appreciated to Sej Modha 4.2k
Appreciated to Sej Modha 4.2k
Appreciated to Sej Modha 4.2k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Recent Replies
Comment: This is a test post by Natay Aberra 0
@Natay-Aberra test the mentions still work
Answer: This is a test post by Natay Aberra 0
Add an answer to this
Comment: This is a test post by Natay Aberra 0
Add a comment to this
Comment: Test tweet by genomax 68k
https://twitter.com/EricTopol/status/1241821959584747521?s=09
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by mdondrup+1463528 • 30
one more maybe
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by Michael 100
and another one....
Comment: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by Michael 100
i am nutz
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by Michael 100
bla`enter code here` #!/bin/basj echo # hi
Comment: How to deal with the .sra.vdbcache files after downloading a sra file? by ATpoint 17k
Just delete.
Comment: How to deal with the .sra.vdbcache files after downloading a sra file? by Jon • 10
Did you solve the mystery? I have the same question and I could not find any clear answers...
Comment: Testing recipe link by Istvan Albert 80k
@genomax18713 change your handle to make it simpler
Comment: Testing recipe link by Istvan Albert 80k
let's see if the parenthesis at the end is fixed (https://www.biostars.org) or like this (see https://www.biostars.org)
Comment: Testing by ATpoint 17k
@ATpoint ping
Answer: How do play audio (playsound) in background of Python script? by genomax 68k
https://gist.github.com/afrendeiro/6732a46b949e864d6803
Comment: Testing by RamRS 21k
A `new_biostars` tag, @genomax18713? Seriously?
Powered by the version 2.1