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253 results • Page
1 of 6
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Showing :
network
•
reset
14
Votes
13
Replies
3.8k
Views
8 follow
A Cytoscape Plugin For Grouping Nodes By 'Compartment' ?
cytoscape
interaction
network
9.6 years ago
Lyco
♦ 2.3k
0
Votes
5
Replies
164
Views
Community detection in R thanks to the igraph package
r
network
community
igraph
19 months ago
vincentpailler
• 50
• updated 19 months ago
Jean-Karim Heriche
19k
0
Votes
2
Replies
106
Views
Network modeling of data produced by mixOmics (R) in Cytoscape
cytoscape
mixOmics
network
multiomics
20 months ago
IrK
• 30
0
Votes
0
Replies
129
Views
How to plot the correlations between OTUs and genes?
igraph
otu
gene
network
20 months ago
vincentpailler
• 50
0
Votes
0
Replies
98
Views
CINNA centrality score and retrieving node names
WGCNA
network
CINNA package
centrality score
20 months ago
hennet.lauriane
• 40
3
Votes
1
Reply
134
Views
Construct a gene co-expression network with WGCNA
wgcna
R
correlation
network
20 months ago
Jenny Han
• 10
92
Votes
59
Replies
12k
Views
10 follow
Tutorial:
Network plot from expression data in R using igraph
R
Tutorial
microarray
RNA-Seq
network
3.2 years ago
Kevin Blighe
43k
• updated 20 months ago
Gabriel
• 20
0
Votes
10
Replies
228
Views
Plot the correlations between OTUs and genes
igraph
correlation
network
20 months ago
vincentpailler
• 50
0
Votes
2
Replies
193
Views
How to rank genes on the basis of degree in cytohubba in cytoscape
cytoscape
network
centrality
gene
20 months ago
xxxxxxxx
• 0
5
Votes
3
Replies
3.0k
Views
How To Visualize Network Comparatively Via Cytoscape Or Other Tools
network
cytoscape
8.2 years ago
maddy
• 20
• updated 21 months ago
Biostar
20
118
Votes
31
Replies
95k
Views
28 follow
Is There A Free Alternative To Ingenuity Pathway Analysis?
network
pathway
9.9 years ago
Gon
• 470
• updated 21 months ago
malina
• 0
3
Votes
3
Replies
5.1k
Views
From Distance Matrix To Network
distance
network
cytoscape
7.4 years ago
SamGG
• 20
• updated 22 months ago
Kevin Blighe
43k
0
Votes
4
Replies
201
Views
Cytoscape - disproportionately big files
cytoscape
network
23 months ago
boczniak767
• 640
6
Votes
3
Replies
383
Views
How to study gene expression network?
gene expression
network
bioinformation
23 months ago
afli
• 180
• updated 23 months ago
mayagreen993
• 0
4
Votes
4
Replies
349
Views
WGCNA network Analysis
WGCNA
Network
GEO
TCGA
R
23 months ago
biotechuos4
• 0
• updated 23 months ago
zx8754
7.5k
0
Votes
0
Replies
145
Views
Annotation of unknown gene sequences in order to annotate PPI's
MRSA
sequence
network
PPI
annotation
23 months ago
laurahjort
• 0
2
Votes
2
Replies
250
Views
What does cluster number in ClusterMaker represent?
cytoscape
clustering
clustermaker
network
24 months ago
Arindam Ghosh
• 160
• updated 24 months ago
scooter
• 80
0
Votes
1
Reply
1.2k
Views
How to import a list of gene and visualize gene-gene interaction in Cytoscape zebrafish session
gene
Cytoscape
network
4.1 years ago
Farbod
♦ 3.3k
• updated 24 months ago
xanderpico
• 170
9
Votes
15
Replies
367
Views
Pick soft threshold for co-expression analysis and filtering step
RNA-Seq
wgcna
coexpression
r
network
2.0 years ago
Biologist
• 150
• updated 2.0 years ago
Kevin Blighe
43k
1
Vote
1
Reply
312
Views
Gene Set (enrichr) and Gene Interaction Data for CEMiTool
coexpression
network
functional enrichment
2.1 years ago
BELA
• 0
• updated 2.0 years ago
pedrostrusso
• 20
0
Votes
5
Replies
4.2k
Views
Wgcna: Exporting Network To Cytoscape For Blockwise Module Construction
r
cytoscape
network
7.3 years ago
pixie@bioinfo
♦ 1.4k
• updated 2.1 years ago
Biostar
20
2
Votes
3
Replies
333
Views
How to construct GCN?
RNA-Seq
network
gene coexpression network
2.1 years ago
Arindam Ghosh
• 160
• updated 2.1 years ago
Kevin Blighe
43k
1
Vote
5
Replies
558
Views
String network analysis
gene
string
network
2.1 years ago
mayada_mazher1991
• 0
• updated 2.1 years ago
guangyan.zh0
• 0
2
Votes
1
Reply
287
Views
how to add gene name in cluego?
cytoscape
cluego
network
genes
2.1 years ago
BioNoobie
• 10
• updated 2.1 years ago
scooter
• 80
0
Votes
2
Replies
321
Views
Importing networks from Cytoscape public database is very very slowly!
Cytoscape
network
web
database
2.1 years ago
BioLite
• 20
• updated 2.1 years ago
scooter
• 80
0
Votes
6
Replies
343
Views
Compare the degree distribution of a real networks and multiple random networks
kolmogorov-smirnov
network
2.1 years ago
The Last Word
• 170
7
Votes
2
Replies
2.3k
Views
Comparison Of Biological Graphs/Networks
graph
clustering
network
7.3 years ago
tigeradab
• 50
• updated 2.1 years ago
kuntal.bhusan
• 20
0
Votes
0
Replies
239
Views
how can I extract group or modules from a huge number of intractions between gene-TF or gene-miRNA?
Network
Interaction
2.2 years ago
Expert
• 30
0
Votes
0
Replies
219
Views
CLRS-type algorithms on sna/network
graph
network
ggnetwork
sna
r
2.2 years ago
mk
• 90
0
Votes
0
Replies
276
Views
Displaying a controversial phylogenetic tree as a network to explicitate noise-generating branches
phylogenesis
tree
network
convert
genome
2.5 years ago
Macspider
♦ 2.8k
• updated 2.2 years ago
Biostar
20
0
Votes
1
Reply
383
Views
SplitsTree command line mode
SplitsTree
phylogeny
network
command line
pipeline
2.2 years ago
Macspider
♦ 2.8k
0
Votes
0
Replies
219
Views
Comparing between different groups of clusters after network clustering
network
2.2 years ago
The Last Word
• 170
0
Votes
0
Replies
217
Views
Less number of motifs found in the real network when compared to the random network
network
motif
2.3 years ago
The Last Word
• 170
0
Votes
2
Replies
405
Views
Gene regulatory networks from expression data
RNA-Seq
network
2.4 years ago
pixie@bioinfo
♦ 1.4k
• updated 2.3 years ago
Biostar
20
1
Vote
5
Replies
359
Views
Comparison of the networks of two species
network
2.3 years ago
The Last Word
• 170
• updated 2.3 years ago
Kevin Blighe
43k
6
Votes
1
Reply
2.0k
Views
Synthetic Lethality In Networks
network
bioconductor
8.8 years ago
Tonig
• 430
• updated 2.4 years ago
Biostar
20
0
Votes
2
Replies
274
Views
Small pathways but big network files
cytoscape
network
2.4 years ago
boczniak767
• 640
• updated 2.4 years ago
scooter
• 80
50
Votes
7
Replies
4.3k
Views
Library / Module For Network Analysis
network
10.5 years ago
Khader Shameer
18k
• updated 2.4 years ago
RamRS
21k
0
Votes
0
Replies
262
Views
How to generate a Disease specific network
PPI
network
microarray
expression
2.4 years ago
Honey
• 20
3
Votes
9
Replies
1.4k
Views
WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonferroni?
WGCNA
Network
pearson
bicor
2.4 years ago
jagoor93
• 0
• updated 2.4 years ago
Kevin Blighe
43k
0
Votes
6
Replies
356
Views
conversion of hippie network to .net format
network
conversion
2.5 years ago
shivangi.agarwal800
• 60
• updated 2.5 years ago
Biostar
20
0
Votes
5
Replies
459
Views
co expression network
R
PROGRAMMING
NETWORK
BIOCONDUCTOR
2.6 years ago
gbahramali
• 20
• updated 2.6 years ago
pbpanigrahi
• 180
2
Votes
7
Replies
669
Views
What if a network is not scale-free?
network
cytoscape
RNA-Seq
2.6 years ago
Arindam Ghosh
• 160
3
Votes
2
Replies
353
Views
Normalised counts of control samples in gene expression matrix
RNA-Seq
expression matrix
network
R
matrix
2.6 years ago
Pranavathiyani G
• 230
• updated 2.6 years ago
Devon Ryan
90k
4
Votes
4
Replies
766
Views
WGCNA network with condition and normal samples
WGCNA
network
RNA-Seq
2.6 years ago
saptarathideb
• 0
• updated 2.6 years ago
Jake Warner
• 730
1
Vote
4
Replies
635
Views
How to plot two networks with overlapping nodes?
network
2.6 years ago
zhang.jianhai
• 0
4
Votes
3
Replies
385
Views
Create a network file to specie without PPI information
cytoscape
ppi
network
2.7 years ago
aboutmb
• 0
• updated 2.7 years ago
Leite
• 400
0
Votes
1
Reply
361
Views
Cytoscape color code according to own annotations
cytoscape
enrichment
string
network
2.7 years ago
frida.danielsson
• 40
• updated 2.7 years ago
Jean-Karim Heriche
19k
0
Votes
0
Replies
238
Views
proteins.actions file of string
string
network
2.7 years ago
noeD
• 70
0
Votes
1
Reply
412
Views
Analyze network clusters with not much biological information
network
2.8 years ago
The Last Word
• 170
• updated 2.7 years ago
Biostar
20
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