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Showing : jellyfish • reset
5
Votes
5
Replies
188
Views
Basic question about using ./configure for installing a software
installation jellyfish
22 months ago
chahat_u • 110 • updated 22 months ago
h.mon 25k
0
Votes
3
Replies
258
Views
Jellyfish version problem Kraken
kraken jellyfish
2.2 years ago
owenz • 10
1
Vote
3
Replies
440
Views
Can we use JELLYFISH for amino acid seqeunces?
jellyfish genome sequencing
2.9 years ago
marksingh1982 • 0 • updated 2.5 years ago
Biostar 20
1
Vote
3
Replies
671
Views
Trinity Error encountered with thread, terminated abnormally, not all specified records have been retrieved.
Trinity Normalization Jellyfish RNA-Seq
2.5 years ago
sierraallinone • 20 • updated 2.5 years ago
Biostar 20
1
Vote
7
Replies
687
Views
genomescope profile failed to converge
genomescope k-mers jellyfish
2.6 years ago
StudentBio • 0 • updated 2.6 years ago
lieven.sterck 5.1k
3
Votes
2
Replies
597
Views
Jellyfish: every other kmer count is zero
kmer counting jellyfish genome size estimation
2.7 years ago
Lina F • 150
0
Votes
2
Replies
527
Views
jellyfish configure script problem
jellyfish configure kraken
3.0 years ago
mark.rose • 30
0
Votes
4
Replies
1.5k
Views
Genome size estimation using jellyfish
genome size jellyfish kmer dual peaks
3.3 years ago
karthic • 100
3
Votes
4
Replies
1.4k
Views
Use jellyfish with paired end sequencing data
jellyfish
3.5 years ago
db • 0 • updated 3.5 years ago
Brian Bushnell 16k
5
Votes
3
Replies
1.8k
Views
Genome size estimation discrepancy : Jellyfish k-mer Vs. estimate_genome_size.pl
k-mer jellyfish genome size
3.5 years ago
Anand Rao • 210 • updated 3.5 years ago
Brian Bushnell 16k
4
Votes
6
Replies
3.1k
Views
K-mers using JEllyfish
k-mers jellyfish counters sequence
6.6 years ago
itsthegodzgarbage • 10 • updated 3.6 years ago
SmallChess • 480
14
Votes
15
Replies
973
Views
Does jellyfish 2 support kmer size > 31
jellyfish kmer kmer counting Jellyfish
3.8 years ago
Chen • 880
0
Votes
1
Reply
656
Views
Jellyfish stalls on a multi-CPU server (Trinity pipe)
RNA-Seq Trinity Jellyfish
3.8 years ago
roussine • 10
3
Votes
4
Replies
638
Views
More specifics on Jellyfish -C methodology.
jellyfish kmer
3.8 years ago
dlawre14 • 30 • updated 3.8 years ago
Rob 3.3k
4
Votes
6
Replies
1.1k
Views
In Jellyfish, what does the "-C" switch do?
Jellyfish Kmer Assembly
5.2 years ago
Tom • 20 • updated 4.1 years ago
Biostar 20
0
Votes
6
Replies
1.5k
Views
trinity jellyfish error
jellyfish
4.2 years ago
cristina_sabiers • 50 • updated 4.2 years ago
huang.wenxun • 0
9
Votes
6
Replies
1.3k
Views
Bug in JellyFish and DSK k-mer counting tool?
dsk jellyfish k-mer
4.2 years ago
SmallChess • 480
2
Votes
2
Replies
918
Views
Large input when using jellyfish
jellyfish next-gen whole genome seq
4.2 years ago
DVA • 520
4
Votes
2
Replies
1.3k
Views
Jellyfish for transcriptome assembly
RNA-Seq Assembly jellyfish K-mer velvet
4.5 years ago
SJ Basu • 30 • updated 4.5 years ago
Brian Bushnell 16k
4
Votes
13
Replies
1.3k
Views
How do I count the number of nucleotides using jellyfish; can I obtain the number of nucleotides that went into a mer_counts.jf from jellyfish stats?
jellyfish genomics k-mer kmer
4.6 years ago
Tom • 20
4
Votes
3
Replies
1.5k
Views
How do i assign a kmer value?
kmergenie SOAP_EC Quake Jellyfish
4.7 years ago
Seigfried • 70
3
Votes
3
Replies
1.3k
Views
Getting sequence id from k-mers using jellyfish
next-gen jellyfish alignment
4.8 years ago
Protostome • 50 • updated 4.8 years ago
Rob 3.3k
1
Vote
2
Replies
1.4k
Views
Is there a concensus on which k-mers should be counted in a histogram graph of kmer multiplicity vs frequency to estimate the genome size?
jellyfish kmergenie kmer genome
5.1 years ago
Tom • 20 • updated 5.0 years ago
trausch ♦ 1.3k
0
Votes
9
Replies
2.3k
Views
How would you write script to count all kmers to estimate the genome size, similar to the one in kmergenie, by using jellyfish+python instead? How wo…
Jellyfish Kmergenie kmer R Python
5.2 years ago
Tom • 20
9
Votes
9
Replies
3.0k
Views
Jellyfish -C option explanation
jellyfish
5.5 years ago
pbigbig • 190 • updated 5.5 years ago
Rob 3.3k
2
Votes
2
Replies
2.2k
Views
Jellyfish v2.1.4 make error
jellyfish
6.0 years ago
Fu-Hao.Lu • 0
1
Vote
2
Replies
2.2k
Views
Jellyfish error on compiling
jellyfish next-gen
6.6 years ago
ab.tsubaki • 50
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