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27 results • Page
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Showing :
jellyfish
•
reset
5
Votes
5
Replies
188
Views
Basic question about using ./configure for installing a software
installation
jellyfish
22 months ago
chahat_u
• 110
• updated 22 months ago
h.mon
25k
0
Votes
3
Replies
258
Views
Jellyfish version problem Kraken
kraken
jellyfish
2.2 years ago
owenz
• 10
1
Vote
3
Replies
440
Views
Can we use JELLYFISH for amino acid seqeunces?
jellyfish
genome
sequencing
2.9 years ago
marksingh1982
• 0
• updated 2.5 years ago
Biostar
20
1
Vote
3
Replies
671
Views
Trinity Error encountered with thread, terminated abnormally, not all specified records have been retrieved.
Trinity
Normalization
Jellyfish
RNA-Seq
2.5 years ago
sierraallinone
• 20
• updated 2.5 years ago
Biostar
20
1
Vote
7
Replies
687
Views
genomescope profile failed to converge
genomescope
k-mers
jellyfish
2.6 years ago
StudentBio
• 0
• updated 2.6 years ago
lieven.sterck
5.1k
3
Votes
2
Replies
597
Views
Jellyfish: every other kmer count is zero
kmer
counting
jellyfish
genome size estimation
2.7 years ago
Lina F
• 150
0
Votes
2
Replies
527
Views
jellyfish configure script problem
jellyfish
configure
kraken
3.0 years ago
mark.rose
• 30
0
Votes
4
Replies
1.5k
Views
Genome size estimation using jellyfish
genome
size
jellyfish
kmer
dual peaks
3.3 years ago
karthic
• 100
3
Votes
4
Replies
1.4k
Views
Use jellyfish with paired end sequencing data
jellyfish
3.5 years ago
db
• 0
• updated 3.5 years ago
Brian Bushnell
16k
5
Votes
3
Replies
1.8k
Views
Genome size estimation discrepancy : Jellyfish k-mer Vs. estimate_genome_size.pl
k-mer
jellyfish
genome size
3.5 years ago
Anand Rao
• 210
• updated 3.5 years ago
Brian Bushnell
16k
4
Votes
6
Replies
3.1k
Views
K-mers using JEllyfish
k-mers
jellyfish
counters
sequence
6.6 years ago
itsthegodzgarbage
• 10
• updated 3.6 years ago
SmallChess
• 480
14
Votes
15
Replies
973
Views
Does jellyfish 2 support kmer size > 31
jellyfish
kmer
kmer counting
Jellyfish
3.8 years ago
Chen
• 880
0
Votes
1
Reply
656
Views
Jellyfish stalls on a multi-CPU server (Trinity pipe)
RNA-Seq
Trinity
Jellyfish
3.8 years ago
roussine
• 10
3
Votes
4
Replies
638
Views
More specifics on Jellyfish -C methodology.
jellyfish
kmer
3.8 years ago
dlawre14
• 30
• updated 3.8 years ago
Rob
3.3k
4
Votes
6
Replies
1.1k
Views
In Jellyfish, what does the "-C" switch do?
Jellyfish
Kmer
Assembly
5.2 years ago
Tom
• 20
• updated 4.1 years ago
Biostar
20
0
Votes
6
Replies
1.5k
Views
trinity jellyfish error
jellyfish
4.2 years ago
cristina_sabiers
• 50
• updated 4.2 years ago
huang.wenxun
• 0
9
Votes
6
Replies
1.3k
Views
Bug in JellyFish and DSK k-mer counting tool?
dsk
jellyfish
k-mer
4.2 years ago
SmallChess
• 480
2
Votes
2
Replies
918
Views
Large input when using jellyfish
jellyfish
next-gen
whole genome seq
4.2 years ago
DVA
• 520
4
Votes
2
Replies
1.3k
Views
Jellyfish for transcriptome assembly
RNA-Seq
Assembly
jellyfish
K-mer
velvet
4.5 years ago
SJ Basu
• 30
• updated 4.5 years ago
Brian Bushnell
16k
4
Votes
13
Replies
1.3k
Views
How do I count the number of nucleotides using jellyfish; can I obtain the number of nucleotides that went into a mer_counts.jf from jellyfish stats?
jellyfish
genomics
k-mer
kmer
4.6 years ago
Tom
• 20
4
Votes
3
Replies
1.5k
Views
How do i assign a kmer value?
kmergenie
SOAP_EC
Quake
Jellyfish
4.7 years ago
Seigfried
• 70
3
Votes
3
Replies
1.3k
Views
Getting sequence id from k-mers using jellyfish
next-gen
jellyfish
alignment
4.8 years ago
Protostome
• 50
• updated 4.8 years ago
Rob
3.3k
1
Vote
2
Replies
1.4k
Views
Is there a concensus on which k-mers should be counted in a histogram graph of kmer multiplicity vs frequency to estimate the genome size?
jellyfish
kmergenie
kmer
genome
5.1 years ago
Tom
• 20
• updated 5.0 years ago
trausch
♦ 1.3k
0
Votes
9
Replies
2.3k
Views
How would you write script to count all kmers to estimate the genome size, similar to the one in kmergenie, by using jellyfish+python instead? How wo…
Jellyfish
Kmergenie
kmer
R
Python
5.2 years ago
Tom
• 20
9
Votes
9
Replies
3.0k
Views
Jellyfish -C option explanation
jellyfish
5.5 years ago
pbigbig
• 190
• updated 5.5 years ago
Rob
3.3k
2
Votes
2
Replies
2.2k
Views
Jellyfish v2.1.4 make error
jellyfish
6.0 years ago
Fu-Hao.Lu
• 0
1
Vote
2
Replies
2.2k
Views
Jellyfish error on compiling
jellyfish
next-gen
6.6 years ago
ab.tsubaki
• 50
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