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51 results • Page
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Showing :
isoform
•
reset
1
Vote
2
Replies
170
Views
STAR+HTSeq gene counts vs STAR+RSEM genes and how to combine isoforms to get the gene counts?
htseq
rsem
star
isoform
gene
20 months ago
jennygenome
• 0
• updated 20 months ago
swbarnes2
5.7k
2
Votes
3
Replies
1.9k
Views
Fusion Isoform Quantification
fusion
isoform
6.9 years ago
Nicolas Rosewick
7.7k
• updated 22 months ago
Biostar
20
1
Vote
6
Replies
332
Views
Some problems with DEXSEQ analyse
RNA-Seq
isoform
expression
DEXSEQ
2.0 years ago
darbinator
• 180
2
Votes
3
Replies
359
Views
How to distinguish if a gene is a paralogue or an isoform?
paralogue
isoform
gene
2.0 years ago
DNAngel
• 30
• updated 2.0 years ago
kashiff007
• 50
0
Votes
0
Replies
395
Views
Identifying 5p and 3p in miRNA isoform expression data from TCGA for feature selection
tcga
microrna
mirna
isoform
data processing
2.4 years ago
jiaqiwu
• 0
3
Votes
17
Replies
560
Views
Relative transcript expression
RNA-Seq
transcript expression
isoform
2.8 years ago
Govardhan Anande
• 130
• updated 2.7 years ago
WouterDeCoster
39k
0
Votes
2
Replies
1.7k
Views
Calculating Distance To Polya Site For Each Exon For Given Gene.Name
ucsc
isoform
data
8.4 years ago
Puriney
• 330
• updated 3.3 years ago
Biostar
20
1
Vote
3
Replies
762
Views
Finding isoform in RNA-seq data
RNA-Seq
isoform
splice variant
human
ES
3.3 years ago
mari.felix5723
• 10
• updated 3.3 years ago
Devon Ryan
90k
1
Vote
3
Replies
1.2k
Views
recognize known isoform from transcript mapping
alignment
isoform
Pacbio
6.0 years ago
ghbore
• 0
• updated 3.5 years ago
Biostar
20
1
Vote
0
Replies
731
Views
How to access up-to-date exon data from GTEx project
gtex
isoform
exon
RNAseq
tissue-specific
3.5 years ago
vlrieg
• 10
2
Votes
2
Replies
627
Views
two different UCSC isoforms for the same transcript
ucsc
tgca
RNA-Seq
isoform
3.6 years ago
donegal77
• 0
6
Votes
7
Replies
3.4k
Views
Identifying Genes That Express Different Isoforms In Cancer Vs Normal Rna-Seq Data
isoform
splicing
expression
8.6 years ago
Sahel
• 250
• updated 3.7 years ago
kristoffer.vittingseerup
♦ 1.8k
5
Votes
8
Replies
1.3k
Views
6 follow
Differential isoform expression analyses
RNA-Seq
isoform
transcript expression
4.4 years ago
rmf
• 630
• updated 3.7 years ago
kristoffer.vittingseerup
♦ 1.8k
1
Vote
3
Replies
954
Views
What is the best tool for isoform function prediction?
RNA-Seq
isoform
prediction
3.9 years ago
Fill
• 70
• updated 3.8 years ago
Biostar
20
13
Votes
13
Replies
6.2k
Views
6 follow
How to extract the longest isoform from multi fasta file
fasta
extract
isoform
perl
python
6.6 years ago
jon.brate
• 220
• updated 3.8 years ago
Biostar
20
2
Votes
1
Reply
1.0k
Views
Single-cell RNA-seq normalization with ERCC for isoform analysis
RNA-Seq
Single-cell RNA-seq
Normalization
Isoform
4.2 years ago
garyhokawai
• 30
• updated 4.2 years ago
Mike
♦ 1.3k
0
Votes
2
Replies
2.0k
Views
Error when running MISO
RNA-Seq
splicing
MISO
isoform
5.1 years ago
onspotproductions
• 130
• updated 4.5 years ago
joe
• 0
0
Votes
2
Replies
846
Views
New isoform discovery with paired end reads across different exons
RNA-Seq
paired end
isoform
4.7 years ago
thomasterTW
• 20
• updated 4.7 years ago
EagleEye
6.4k
0
Votes
0
Replies
709
Views
MISO :: Filtered out "n" read pairs that were on same strand
RNA-Seq
sequencing
next-gen
splicing
isoform
4.8 years ago
Govardhan Anande
• 130
7
Votes
1
Reply
3.3k
Views
Hisat2 on multiple paired-end input
RNA-Seq
sequencing
genome
isoform
read
4.8 years ago
dovah
• 30
• updated 4.8 years ago
Devon Ryan
90k
1
Vote
6
Replies
2.4k
Views
Identification of major isoform per gene from RNA-Seq
major
isoform
RNA-Seq
cufflinks
4.9 years ago
Leszek
4.0k
4
Votes
6
Replies
1.2k
Views
TERT isoform discrepancies UCSC vs Ensembl
gene
isoform
ensembl
ucsc
uniprot
5.0 years ago
floris.barthel
• 40
• updated 5.0 years ago
Emily_Ensembl
18k
2
Votes
2
Replies
1.2k
Views
PE or SE reads for alternative splicing / isoform quantification?
RNA-seq
Isoform
splicing
CuffLinks
CuffDiff
5.0 years ago
nevev
• 90
• updated 5.0 years ago
Brian Bushnell
16k
2
Votes
1
Reply
890
Views
ensemble illumina tissues aligned rnaSeq
RNA-Seq
alignment
ISOFORM
gene
bioinformatics
5.3 years ago
fk566938
• 10
• updated 5.3 years ago
mkulecka
• 300
3
Votes
6
Replies
2.9k
Views
Finding isoform expression in RNA-Seq
RNA-Seq
isoform
tophat
cufflinks
6.1 years ago
Whoknows
• 740
• updated 5.4 years ago
andrew.j.skelton73
5.7k
9
Votes
4
Replies
1.7k
Views
differential expression at transcript level with paired samples
RNA-Seq
paired samples
isoform
5.6 years ago
mjg
• 20
• updated 5.5 years ago
lakigigar
• 220
2
Votes
4
Replies
2.3k
Views
In TCGA RNA-seq exon specific data, why not all the exons of a particular isoform have similar read (RPKM)?
RNA-Seq
next-gen
rna-seq
genome
isoform
5.6 years ago
ruhulmb
• 0
• updated 5.6 years ago
Devon Ryan
90k
4
Votes
2
Replies
2.0k
Views
Are Novel Junctions Only Give Novel Transcripts?
tophat
rna
isoform
9.0 years ago
Ngsnewbie
• 360
• updated 5.7 years ago
Biostar
20
2
Votes
2
Replies
2.1k
Views
How to get the coding sequence of each isoform of a gene?
isoform
sequence
5.7 years ago
bounlu
• 170
• updated 5.7 years ago
Emily_Ensembl
18k
3
Votes
4
Replies
1.4k
Views
Any advice on how to do isoform quantification?
RNA-Seq
transcriptome
isoform
5.7 years ago
cyril-cros
• 890
0
Votes
1
Reply
1.5k
Views
Aligning UniProt Canonical Sequences With Their Isoform Sequences
uniprot
sequence
canonical
isoform
align
5.8 years ago
pwg46
• 370
• updated 5.8 years ago
Elisabeth Gasteiger
♦ 1.6k
1
Vote
3
Replies
1.5k
Views
AUGUSTUS principal isoform
augustus
isoform
principal isoform
6.1 years ago
jomaco
• 190
64
Votes
8
Replies
13k
Views
7 follow
How Are Rna-Seq Transcripts Assigned?
rna
cufflinks
isoform
rna-seq
9.1 years ago
Dave Bridges
♦ 1.3k
• updated 6.6 years ago
Malachi Griffith
17k
10
Votes
2
Replies
3.0k
Views
Is It Normal For Cufflinks Produce Different Results In Multiple Runs
cufflinks
rna
isoform
10.0 years ago
Superligang
• 70
• updated 6.7 years ago
Biostar
20
0
Votes
0
Replies
1.2k
Views
Question about assess Multiple Sequence Alignment
Multiple Sequence Alignment
MSA
isoform
6.8 years ago
Chong Tang
• 80
• updated 6.8 years ago
Devon Ryan
90k
0
Votes
0
Replies
2.2k
Views
Cufflinks & Cuffdiff Novel Isoform Detection
isoform
cufflinks
cuffdiff
7.0 years ago
andrew.j.skelton73
5.7k
0
Votes
1
Reply
2.3k
Views
Differential Isoform Expression In Cuffdiff: How Does It Work?
cufflinks
cuffdiff
isoform
expression
7.1 years ago
gwilymh1000
• 0
1
Vote
4
Replies
3.8k
Views
Major/Minor Isoform And Tissue-Specific Expression
transcript
expression
isoform
7.5 years ago
Pierre
• 120
12
Votes
9
Replies
3.0k
Views
Alignment Free Expression Quantification Using Sailfish: Any Experience?
rnaseq
isoform
7.5 years ago
johnstantongeddes
• 410
• updated 7.5 years ago
Madelaine Gogol
5.1k
1
Vote
0
Replies
1.3k
Views
Single Reference Sequence For Each (Ensembl) Gene?
isoform
7.6 years ago
mjchen.sub
• 10
24
Votes
8
Replies
15k
Views
6 follow
Data Visualisation -- Exon/Intron Map?
visualization
isoform
gene
intron
9.0 years ago
Puriney
• 150
• updated 7.6 years ago
jockbanan
• 380
0
Votes
2
Replies
1.3k
Views
How To Exon-Intron Map With Given Coordinates?
visualization
isoform
7.6 years ago
manish
• 0
• updated 7.6 years ago
Alex Reynolds
28k
12
Votes
2
Replies
2.1k
Views
Human Alternative Isoforms In Uniprot
human
splicing
isoform
uniprot
8.1 years ago
Pierre
• 120
• updated 8.1 years ago
Elisabeth Gasteiger
♦ 1.6k
20
Votes
5
Replies
8.5k
Views
Transcript-Level Versus Gene-Level Go Enrichment Analysis (For Non-Model Organism)
go
enrichment
transcript
isoform
8.4 years ago
dsbreak
• 140
• updated 8.3 years ago
Obi Griffith
17k
4
Votes
9
Replies
3.0k
Views
Distribution Of Isoform Length
isoform
rna-seq
length
8.9 years ago
Tianyang Li
• 490
• updated 8.9 years ago
Peixe
• 580
5
Votes
1
Reply
2.6k
Views
[Hg19.Gtf] Why Is The Same Transcript Annotated As Multiple Isoforms??
hg
annotation
transcript
isoform
gene
9.1 years ago
Leszek
4.0k
• updated 9.1 years ago
Neilfws
48k
7
Votes
4
Replies
2.0k
Views
Isoforms Missing In Uniprot Isoforms Fasta File
uniprot
isoform
protein
xml
fasta
9.3 years ago
Pablo Pareja
♦ 1.6k
• updated 9.3 years ago
Elisabeth Gasteiger
♦ 1.6k
15
Votes
3
Replies
6.3k
Views
How To Generate A Simple Isoform Diagram
visualization
isoform
gene
9.6 years ago
Zak
• 40
• updated 9.6 years ago
Arun
2.3k
8
Votes
5
Replies
2.5k
Views
Ensembl Api: How To Print All Transcript Isoforms As A Multifasta Alignment
ensembl
transcript
isoform
multiple
fasta
9.8 years ago
2184687-1231-83-
♦ 4.9k
• updated 9.8 years ago
Jeff Hussmann
• 120
13
Votes
6
Replies
1.6k
Views
Non Uniform Gene Coverage And Cufflinks Predictions : Artifacts ?
cufflinks
isoform
gene
prediction
10.0 years ago
Hugo D
• 110
• updated 10.0 years ago
Michael Dondrup
46k
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