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Showing : isoform • reset
1
Vote
2
Replies
170
Views
STAR+HTSeq gene counts vs STAR+RSEM genes and how to combine isoforms to get the gene counts?
htseq rsem star isoform gene
20 months ago
jennygenome • 0 • updated 20 months ago
swbarnes2 5.7k
2
Votes
3
Replies
1.9k
Views
Fusion Isoform Quantification
fusion isoform
6.9 years ago
Nicolas Rosewick 7.7k • updated 22 months ago
Biostar 20
1
Vote
6
Replies
332
Views
Some problems with DEXSEQ analyse
RNA-Seq isoform expression DEXSEQ
2.0 years ago
darbinator • 180
2
Votes
3
Replies
359
Views
How to distinguish if a gene is a paralogue or an isoform?
paralogue isoform gene
2.0 years ago
DNAngel • 30 • updated 2.0 years ago
kashiff007 • 50
0
Votes
0
Replies
395
Views
Identifying 5p and 3p in miRNA isoform expression data from TCGA for feature selection
tcga microrna mirna isoform data processing
2.4 years ago
jiaqiwu • 0
3
Votes
17
Replies
560
Views
Relative transcript expression
RNA-Seq transcript expression isoform
2.8 years ago
Govardhan Anande • 130 • updated 2.7 years ago
WouterDeCoster 39k
0
Votes
2
Replies
1.7k
Views
Calculating Distance To Polya Site For Each Exon For Given Gene.Name
ucsc isoform data
8.4 years ago
Puriney • 330 • updated 3.3 years ago
Biostar 20
1
Vote
3
Replies
762
Views
Finding isoform in RNA-seq data
RNA-Seq isoform splice variant human ES
3.3 years ago
mari.felix5723 • 10 • updated 3.3 years ago
Devon Ryan 90k
1
Vote
3
Replies
1.2k
Views
recognize known isoform from transcript mapping
alignment isoform Pacbio
6.0 years ago
ghbore • 0 • updated 3.5 years ago
Biostar 20
1
Vote
0
Replies
731
Views
How to access up-to-date exon data from GTEx project
gtex isoform exon RNAseq tissue-specific
3.5 years ago
vlrieg • 10
2
Votes
2
Replies
627
Views
two different UCSC isoforms for the same transcript
ucsc tgca RNA-Seq isoform
3.6 years ago
donegal77 • 0
6
Votes
7
Replies
3.4k
Views
Identifying Genes That Express Different Isoforms In Cancer Vs Normal Rna-Seq Data
isoform splicing expression
8.6 years ago
Sahel • 250 • updated 3.7 years ago
kristoffer.vittingseerup ♦ 1.8k
5
Votes
8
Replies
1.3k
Views
6 follow
Differential isoform expression analyses
RNA-Seq isoform transcript expression
4.4 years ago
rmf • 630 • updated 3.7 years ago
kristoffer.vittingseerup ♦ 1.8k
1
Vote
3
Replies
954
Views
What is the best tool for isoform function prediction?
RNA-Seq isoform prediction
3.9 years ago
Fill • 70 • updated 3.8 years ago
Biostar 20
13
Votes
13
Replies
6.2k
Views
6 follow
How to extract the longest isoform from multi fasta file
fasta extract isoform perl python
6.6 years ago
jon.brate • 220 • updated 3.8 years ago
Biostar 20
2
Votes
1
Reply
1.0k
Views
Single-cell RNA-seq normalization with ERCC for isoform analysis
RNA-Seq Single-cell RNA-seq Normalization Isoform
4.2 years ago
garyhokawai • 30 • updated 4.2 years ago
Mike ♦ 1.3k
0
Votes
2
Replies
2.0k
Views
Error when running MISO
RNA-Seq splicing MISO isoform
5.1 years ago
onspotproductions • 130 • updated 4.5 years ago
joe • 0
0
Votes
2
Replies
846
Views
New isoform discovery with paired end reads across different exons
RNA-Seq paired end isoform
4.7 years ago
thomasterTW • 20 • updated 4.7 years ago
EagleEye 6.4k
0
Votes
0
Replies
709
Views
MISO :: Filtered out "n" read pairs that were on same strand
RNA-Seq sequencing next-gen splicing isoform
4.8 years ago
Govardhan Anande • 130
7
Votes
1
Reply
3.3k
Views
Hisat2 on multiple paired-end input
RNA-Seq sequencing genome isoform read
4.8 years ago
dovah • 30 • updated 4.8 years ago
Devon Ryan 90k
1
Vote
6
Replies
2.4k
Views
Identification of major isoform per gene from RNA-Seq
major isoform RNA-Seq cufflinks
4.9 years ago
Leszek 4.0k
4
Votes
6
Replies
1.2k
Views
TERT isoform discrepancies UCSC vs Ensembl
gene isoform ensembl ucsc uniprot
5.0 years ago
floris.barthel • 40 • updated 5.0 years ago
Emily_Ensembl 18k
2
Votes
2
Replies
1.2k
Views
PE or SE reads for alternative splicing / isoform quantification?
RNA-seq Isoform splicing CuffLinks CuffDiff
5.0 years ago
nevev • 90 • updated 5.0 years ago
Brian Bushnell 16k
2
Votes
1
Reply
890
Views
ensemble illumina tissues aligned rnaSeq
RNA-Seq alignment ISOFORM gene bioinformatics
5.3 years ago
fk566938 • 10 • updated 5.3 years ago
mkulecka • 300
3
Votes
6
Replies
2.9k
Views
Finding isoform expression in RNA-Seq
RNA-Seq isoform tophat cufflinks
6.1 years ago
Whoknows • 740 • updated 5.4 years ago
andrew.j.skelton73 5.7k
9
Votes
4
Replies
1.7k
Views
differential expression at transcript level with paired samples
RNA-Seq paired samples isoform
5.6 years ago
mjg • 20 • updated 5.5 years ago
lakigigar • 220
2
Votes
4
Replies
2.3k
Views
In TCGA RNA-seq exon specific data, why not all the exons of a particular isoform have similar read (RPKM)?
RNA-Seq next-gen rna-seq genome isoform
5.6 years ago
ruhulmb • 0 • updated 5.6 years ago
Devon Ryan 90k
4
Votes
2
Replies
2.0k
Views
Are Novel Junctions Only Give Novel Transcripts?
tophat rna isoform
9.0 years ago
Ngsnewbie • 360 • updated 5.7 years ago
Biostar 20
2
Votes
2
Replies
2.1k
Views
How to get the coding sequence of each isoform of a gene?
isoform sequence
5.7 years ago
bounlu • 170 • updated 5.7 years ago
Emily_Ensembl 18k
3
Votes
4
Replies
1.4k
Views
Any advice on how to do isoform quantification?
RNA-Seq transcriptome isoform
5.7 years ago
cyril-cros • 890
0
Votes
1
Reply
1.5k
Views
Aligning UniProt Canonical Sequences With Their Isoform Sequences
uniprot sequence canonical isoform align
5.8 years ago
pwg46 • 370 • updated 5.8 years ago
Elisabeth Gasteiger ♦ 1.6k
1
Vote
3
Replies
1.5k
Views
AUGUSTUS principal isoform
augustus isoform principal isoform
6.1 years ago
jomaco • 190
64
Votes
8
Replies
13k
Views
7 follow
How Are Rna-Seq Transcripts Assigned?
rna cufflinks isoform rna-seq
9.1 years ago
Dave Bridges ♦ 1.3k • updated 6.6 years ago
Malachi Griffith 17k
10
Votes
2
Replies
3.0k
Views
Is It Normal For Cufflinks Produce Different Results In Multiple Runs
cufflinks rna isoform
10.0 years ago
Superligang • 70 • updated 6.7 years ago
Biostar 20
0
Votes
0
Replies
1.2k
Views
Question about assess Multiple Sequence Alignment
Multiple Sequence Alignment MSA isoform
6.8 years ago
Chong Tang • 80 • updated 6.8 years ago
Devon Ryan 90k
0
Votes
0
Replies
2.2k
Views
Cufflinks & Cuffdiff Novel Isoform Detection
isoform cufflinks cuffdiff
7.0 years ago
andrew.j.skelton73 5.7k
0
Votes
1
Reply
2.3k
Views
Differential Isoform Expression In Cuffdiff: How Does It Work?
cufflinks cuffdiff isoform expression
7.1 years ago
gwilymh1000 • 0
1
Vote
4
Replies
3.8k
Views
Major/Minor Isoform And Tissue-Specific Expression
transcript expression isoform
7.5 years ago
Pierre • 120
12
Votes
9
Replies
3.0k
Views
Alignment Free Expression Quantification Using Sailfish: Any Experience?
rnaseq isoform
7.5 years ago
johnstantongeddes • 410 • updated 7.5 years ago
Madelaine Gogol 5.1k
1
Vote
0
Replies
1.3k
Views
Single Reference Sequence For Each (Ensembl) Gene?
isoform
7.6 years ago
mjchen.sub • 10
24
Votes
8
Replies
15k
Views
6 follow
Data Visualisation -- Exon/Intron Map?
visualization isoform gene intron
9.0 years ago
Puriney • 150 • updated 7.6 years ago
jockbanan • 380
0
Votes
2
Replies
1.3k
Views
How To Exon-Intron Map With Given Coordinates?
visualization isoform
7.6 years ago
manish • 0 • updated 7.6 years ago
Alex Reynolds 28k
12
Votes
2
Replies
2.1k
Views
Human Alternative Isoforms In Uniprot
human splicing isoform uniprot
8.1 years ago
Pierre • 120 • updated 8.1 years ago
Elisabeth Gasteiger ♦ 1.6k
20
Votes
5
Replies
8.5k
Views
Transcript-Level Versus Gene-Level Go Enrichment Analysis (For Non-Model Organism)
go enrichment transcript isoform
8.4 years ago
dsbreak • 140 • updated 8.3 years ago
Obi Griffith 17k
4
Votes
9
Replies
3.0k
Views
Distribution Of Isoform Length
isoform rna-seq length
8.9 years ago
Tianyang Li • 490 • updated 8.9 years ago
Peixe • 580
5
Votes
1
Reply
2.6k
Views
[Hg19.Gtf] Why Is The Same Transcript Annotated As Multiple Isoforms??
hg annotation transcript isoform gene
9.1 years ago
Leszek 4.0k • updated 9.1 years ago
Neilfws 48k
7
Votes
4
Replies
2.0k
Views
Isoforms Missing In Uniprot Isoforms Fasta File
uniprot isoform protein xml fasta
9.3 years ago
Pablo Pareja ♦ 1.6k • updated 9.3 years ago
Elisabeth Gasteiger ♦ 1.6k
15
Votes
3
Replies
6.3k
Views
How To Generate A Simple Isoform Diagram
visualization isoform gene
9.6 years ago
Zak • 40 • updated 9.6 years ago
Arun 2.3k
8
Votes
5
Replies
2.5k
Views
Ensembl Api: How To Print All Transcript Isoforms As A Multifasta Alignment
ensembl transcript isoform multiple fasta
9.8 years ago
2184687-1231-83- ♦ 4.9k • updated 9.8 years ago
Jeff Hussmann • 120
13
Votes
6
Replies
1.6k
Views
Non Uniform Gene Coverage And Cufflinks Predictions : Artifacts ?
cufflinks isoform gene prediction
10.0 years ago
Hugo D • 110 • updated 10.0 years ago
Michael Dondrup 46k
51 results • Page 1 of 2
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