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44 results • Page
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Showing :
header
•
reset
0
Votes
4
Replies
356
Views
Bam header editing
bam
header
22 months ago
Huynh Nguyen
• 0
• updated 22 months ago
Istvan Albert
87k
5
Votes
4
Replies
245
Views
How to rename duplicate fasta headers after the first underscore '_'?
fasta
header
duplicate
sed
awk
22 months ago
MB
• 20
• updated 22 months ago
Carambakaracho
♦ 1.2k
1
Vote
2
Replies
312
Views
bcftools reheader -h
bcftools
header
format
23 months ago
marta.rusmini
• 0
• updated 23 months ago
finswimmer
11k
6
Votes
8
Replies
334
Views
How to extract organisms name from the headers in a multi-fasta file?
Fasta
Regex
Sed
Header
23 months ago
MB
• 20
• updated 23 months ago
finswimmer
11k
0
Votes
10
Replies
372
Views
How to add name of genus and species automatically in headers of a multi-FASTA file after run BLASTn?
BLASTN
RENAME
HEADER
MULTI-FASTA
SCRIPT
2.2 years ago
BetterOrWorse
• 0
• updated 2.0 years ago
Biostar
20
6
Votes
8
Replies
1.9k
Views
modifying the header of VCF file
header
order
vcf
4.5 years ago
zengtony743
• 70
• updated 2.1 years ago
zx8754
7.5k
3
Votes
8
Replies
450
Views
how to add the sample name to the end read headers
fasta
relablel
header
2.4 years ago
juan.galarza
• 0
• updated 2.2 years ago
Biostar
20
6
Votes
13
Replies
441
Views
Reheadering a subsetted bam gives truncated file
samtools
reheader
header
bam
2.5 years ago
Luciferine
• 0
• updated 2.3 years ago
Biostar
20
0
Votes
7
Replies
421
Views
Parsing header of FASTA File
FASTA
sequence
header
Parse
2.4 years ago
Shelle
• 0
• updated 2.4 years ago
ATpoint
17k
0
Votes
2
Replies
437
Views
Extract Reverse Reads Based on Header Information of Forward Reads
Miseq
sequence identifier
header
paired reads
2.4 years ago
dennis.guettler
• 0
• updated 2.4 years ago
Dattatray Mongad
• 290
1
Vote
6
Replies
580
Views
get size information from an OTU table into a fastafile for use in USEARCH/VSEARCH
fasta
otu table
header
2.6 years ago
EBP91
• 0
8
Votes
11
Replies
3.0k
Views
7 follow
Extract fasta sequences from a file using a list in another file.
fasta
header
extract
awk
grep
2.6 years ago
EBP91
• 0
• updated 2.6 years ago
cpad0112
11k
0
Votes
9
Replies
1.6k
Views
Sam file header and truncated file
sam
samtools
header
4.3 years ago
TriS
♦ 3.8k
• updated 2.7 years ago
Volkan Sevim
• 0
1
Vote
1
Reply
458
Views
Does samtools view -b -h <input.bam> -L <input.bed> keep the original header?
samtools
header
2.8 years ago
rubic
• 180
• updated 2.8 years ago
d-cameron
♦ 2.0k
2
Votes
2
Replies
678
Views
How to sort an interleaved fastq file by the barcode (BX:Z:) from the header
interleaved fastq
barcode
sort
header
2.9 years ago
guillepalou4
• 0
• updated 2.9 years ago
Pierre Lindenbaum
120k
0
Votes
1
Reply
524
Views
How to extract and save the header of .bam,vcf and idat files in a text file
bam
ida
vcf
extract
header
2.9 years ago
nsonkole
• 0
• updated 2.9 years ago
ATpoint
17k
0
Votes
10
Replies
646
Views
Editing header by adding pipe in fasta file
Header
FASTA
Grep
Editing
2.9 years ago
muhammad.arslan
• 0
• updated 2.9 years ago
Hugo
• 150
4
Votes
3
Replies
559
Views
Extracting interval from fasta header
fasta
header
bed
interval
3.0 years ago
rbronste
• 240
• updated 3.0 years ago
Alex Reynolds
28k
4
Votes
5
Replies
1.0k
Views
Problems while reheadering BAM with Samtools 1.3.1
Header
BAM
Samtools
3.1 years ago
ognjen011
• 170
9
Votes
20
Replies
3.2k
Views
How To Rename FASTA Headers
FASTA
Header
4.1 years ago
mollysil
• 0
• updated 3.1 years ago
h.mon
25k
0
Votes
0
Replies
725
Views
Deconstruct signature package
maf
header
names
3.4 years ago
David_emir
• 340
8
Votes
24
Replies
1.8k
Views
Add filename to fasta headers of multiple fasta files inside loop
pyfasta
header
fasta
bash
gene
3.4 years ago
bioinfo8
• 120
1
Vote
8
Replies
1.7k
Views
Missing header sam file
SAM
ChIP-Seq
BAM
header
3.5 years ago
G.Car
• 20
• updated 3.5 years ago
Pierre Lindenbaum
120k
0
Votes
9
Replies
936
Views
Modification of fastq header
header
fastq
read
modification
3.8 years ago
seta
♦ 1.2k
• updated 3.8 years ago
Charles Plessy
♦ 2.7k
2
Votes
2
Replies
1.1k
Views
How to create name/rename on header of fasta file with python script?
python
rename
fasta
header
script
3.8 years ago
nut_B
• 10
• updated 3.8 years ago
guillaume.rbt
• 590
2
Votes
4
Replies
824
Views
Help required to Rectify/reformat the fasta header of nr database fasta sequences
RNA-Seq
blast
fasta
NCBI
header
3.8 years ago
bilal.sarwar
• 0
• updated 3.8 years ago
Pierre Lindenbaum
120k
0
Votes
2
Replies
958
Views
Change vcf header in windows
vcf
windows
header
gatk
samtools
4.3 years ago
petersam
• 0
• updated 4.3 years ago
Zaag
• 720
5
Votes
9
Replies
1.8k
Views
How to append strings (from one file) to Fasta headers (in another file)
bioawk
FASTA
header
append
4.3 years ago
al-ash
• 100
• updated 4.3 years ago
Joe
12k
4
Votes
4
Replies
1.1k
Views
Filter Fasta using regexp on header
Fasta
filter
header
regexp
4.4 years ago
sacha
♦ 1.7k
• updated 4.4 years ago
shenwei356
4.6k
1
Vote
2
Replies
1.4k
Views
rename fasta headers in FastaAlternateReferenceMaker output
bed
fasta
gatk
fastaalternatereferencemaker
header
4.5 years ago
mosquitoes
• 0
5
Votes
23
Replies
1.2k
Views
Please help with connecting the part of the header in a fasta file with another text file
fasta file
header
txt file
programming
4.5 years ago
seta
♦ 1.2k
• updated 4.5 years ago
5heikki
8.4k
2
Votes
5
Replies
1.2k
Views
Output whole header line in fasta file using bwa
header
BWA
Complete
Whole Line
mem
4.6 years ago
erikras1223
• 10
0
Votes
3
Replies
683
Views
Does header replacement have an effect on alignment part in a BAM file?
header
BAM
4.6 years ago
tlgolan
• 0
• updated 4.6 years ago
Devon Ryan
90k
1
Vote
4
Replies
1.1k
Views
Re-naming just part of header in fasta file
re-name
header
fasta file
4.9 years ago
seta
♦ 1.2k
• updated 4.9 years ago
Anima Mundi
♦ 2.4k
4
Votes
6
Replies
1.2k
Views
How to move the last 4 characters of all FASTA headers to the beginning?
myposts
fasta
header
sample name
5.0 years ago
fibar
• 50
• updated 5.0 years ago
Daniel
♦ 3.7k
3
Votes
1
Reply
907
Views
Batch replcement of fasta header
fasta
header
5.1 years ago
mbk0asis
• 420
• updated 5.1 years ago
Sam
♦ 2.3k
5
Votes
6
Replies
1.6k
Views
How to add a specific character into the specific location of header in fasta file?
sequence
header
adding specific characters
5.4 years ago
seta
♦ 1.2k
• updated 5.2 years ago
Biostar
20
0
Votes
1
Reply
1.3k
Views
replace headers in a fasta file
fasta
replace
header
5.3 years ago
nicolas.dussex
• 30
• updated 5.3 years ago
venu
6.2k
6
Votes
1
Reply
1.3k
Views
Extracted the chrM portion of bam into a new bam with header
bam
chrM
header
samtools
5.6 years ago
quachtina96
• 40
• updated 5.6 years ago
Gabriel R.
♦ 2.6k
5
Votes
3
Replies
3.2k
Views
renaming all fasta headers in a file
fasta
header
renaming
5.6 years ago
branokdrung
• 10
• updated 5.6 years ago
iraun
♦ 3.5k
13
Votes
5
Replies
2.8k
Views
VCF header line counting
vcf
header
5.9 years ago
basalganglia
• 30
• updated 5.9 years ago
Biostar
20
0
Votes
2
Replies
3.0k
Views
GATK variant recal malformed vcf
GATK
VCF
Malformed
Header
6.1 years ago
SemiQuant
• 50
• updated 6.1 years ago
RamRS
21k
5
Votes
9
Replies
2.4k
Views
Filtration of bam file but with header
BAM
samtools
filtration
header
6.6 years ago
filipzembol
• 100
• updated 6.6 years ago
Jorge Amigo
11k
5
Votes
5
Replies
1.5k
Views
how to change the header of input file
header
fasta file
sed
awk
6.7 years ago
Raghav
• 100
• updated 6.7 years ago
JC
7.9k
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