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Showing : genotype • reset
0
Votes
2
Replies
209
Views
genotype field in vcf file
SNP vcf genotype NGS
22 months ago
manjumoorthy95 • 10 • updated 21 months ago
Biostar 20
10
Votes
2
Replies
2.2k
Views
PCA using HapMap population data
PCA HapMap VCF genotype
5.0 years ago
eze.anokian • 10 • updated 21 months ago
zx8754 7.5k
0
Votes
2
Replies
4.1k
Views
From genotype raw data .idat to PLINK files
R sequencing genotype
6.9 years ago
Armand • 20 • updated 21 months ago
eva.gradovich • 0
1
Vote
3
Replies
522
Views
How to download SNPedia database or data dump
SNP genome next-gen gene genotype
23 months ago
sofie_carolina • 20 • updated 22 months ago
Biostar 20
0
Votes
0
Replies
119
Views
SGT and Genotype in strelka output
strelka SGT genotype
22 months ago
Shicheng Guo ♦ 7.5k
2
Votes
1
Reply
137
Views
1000 genomes genotypes interpretation
1000g genotype hom het
22 months ago
cocchi.e89 • 20
2
Votes
9
Replies
259
Views
Genotype phased and unphased
genotype phasing vcf SNP
23 months ago
manjumoorthy95 • 10 • updated 23 months ago
Pierre Lindenbaum 120k
0
Votes
0
Replies
142
Views
how to study genetic correlation between two traits
GWAS genotype genetic correlations
23 months ago
lilingjoyo • 30 • updated 23 months ago
genomax 68k
0
Votes
0
Replies
181
Views
Michigan imputation server quality control failed
imputation genotype
23 months ago
Phoenix Mu • 0
0
Votes
0
Replies
159
Views
Getting intensities using apt-genotype-axiom
genotype assembly PMRA Affymetrix
2.0 years ago
Genotepes • 940 • updated 2.0 years ago
zx8754 7.5k
0
Votes
0
Replies
144
Views
refine population phased haplotypes by pedigree
phasing genotype pedigree population
2.0 years ago
samuelandjw • 20
0
Votes
1
Reply
254
Views
Converting GL value to GT format of vcf data
SNP genotype
2.0 years ago
monjura.afrin • 0 • updated 2.0 years ago
finswimmer 11k
2
Votes
3
Replies
345
Views
getting the HOM_REF genotypes using bcftools mpileup+call ?
bcftools call mpileup variant genotype
2.1 years ago
Pierre Lindenbaum 120k • updated 2.1 years ago
RamRS 21k
5
Votes
7
Replies
1.3k
Views
Extracting certain columns from VCF file
vcf vcftools genotype exome question
2.8 years ago
gradstudentNew • 10 • updated 2.2 years ago
zx8754 7.5k
0
Votes
0
Replies
202
Views
Strain Assignments to QTL Data
MUGA QTL RQTL2 Illumina Genotype
2.2 years ago
annacsalvador • 0
4
Votes
6
Replies
498
Views
Attaching genotypes in the vcf files to individual ID
genotype
2.8 years ago
Ana • 170 • updated 2.2 years ago
zx8754 7.5k
4
Votes
1
Reply
290
Views
Genotypes from different strand for same variant position
genotype strand
2.2 years ago
first • 30 • updated 2.2 years ago
finswimmer 11k
0
Votes
1
Reply
1.1k
Views
Log-tranformation and GWAS
gwas transformation genotype statistics logarithm
2.8 years ago
rednalf • 50 • updated 2.3 years ago
Biostar 20
1
Vote
3
Replies
303
Views
Genotype input in matrix eqtl with dosage dataset
dosage genotype eqtl
2.3 years ago
Molly_K • 50 • updated 2.3 years ago
devidjohn47 • 0
16
Votes
13
Replies
352
Views
Get genotype GT from multi-sample VCF (per chromosome)
vcf subset genotype bcftools
2.3 years ago
zx8754 7.5k • updated 2.3 years ago
Pierre Lindenbaum 120k
3
Votes
3
Replies
771
Views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype simulation SNP MAF LD
3.2 years ago
J.F.Jiang • 750 • updated 2.3 years ago
zx8754 7.5k
1
Vote
5
Replies
479
Views
compare and merge VCF files
VCF genotype
2.3 years ago
qwzhang0601 • 60 • updated 2.3 years ago
berrytaylor56 • 0
4
Votes
3
Replies
1.0k
Views
Simulate genotypes based on reference genotypes with same LD structure?
plink simulate genotype ld
4.0 years ago
Veera • 90 • updated 2.3 years ago
Shicheng Guo ♦ 7.5k
3
Votes
4
Replies
302
Views
Counting the frequency of genotypes per row based on the calls of the first column in a data frame in R
R genotype
2.3 years ago
Fersal • 20 • updated 2.3 years ago
ATpoint 17k
4
Votes
4
Replies
333
Views
RSID for multiple alternative variants present in a single line
rsid vcf genotype
2.4 years ago
ognjen011 • 170
1
Vote
2
Replies
498
Views
Calculating frequencies of possible combinations of SNP genotypes in a population
genotype frequency allele
2.4 years ago
Volka • 50 • updated 2.4 years ago
Gennady Khvorykh • 90
4
Votes
6
Replies
318
Views
4/6 genotype in VCF
vcf variant calling genotype
2.4 years ago
ajuiwl • 30 • updated 2.4 years ago
Pierre Lindenbaum 120k
2
Votes
2
Replies
336
Views
Method to get all possible combinations of genotypes for a group of SNPs
combination genotype permutation python R
2.4 years ago
Volka • 50 • updated 2.4 years ago
t.kuilman • 750
0
Votes
0
Replies
1.5k
Views
Haplotype to Genotype data and linking to SNP
myposts SNP genotype haplotype
5.0 years ago
emmapead2 • 60 • updated 2.5 years ago
RamRS 21k
3
Votes
3
Replies
2.0k
Views
Ensembl Perl API - How to get genotype frequencies
perl api genotype genotype frequency Ensembl
5.5 years ago
entheologist33 • 70 • updated 2.5 years ago
zx8754 7.5k
0
Votes
1
Reply
374
Views
How to Parse a Merged VCF File into Gene-by-Gene data Across Samples?
genome exome parse vcf genotype
2.5 years ago
nighralf • 0
2
Votes
4
Replies
250
Views
1000 genome project - difference between "0" and "0|0"
1000 genome project genotype vcf
2.5 years ago
mbk0asis • 420 • updated 2.5 years ago
Santosh Anand 4.8k
4
Votes
10
Replies
2.0k
Views
Get multiple snps coverage (allelic depth) from bam files
bam sequencing genotype
5.3 years ago
MAPK ♦ 1.4k • updated 2.6 years ago
le.marcorin • 0
3
Votes
2
Replies
386
Views
How to check which samples has more uncalled genotypes in multi-sample vcf
genotype missing sample
2.6 years ago
BAGeno • 130 • updated 2.6 years ago
Pierre Lindenbaum 120k
1
Vote
8
Replies
335
Views
Problem with allele number in vcf
vcf allele number genotype
2.6 years ago
BAGeno • 130 • updated 2.6 years ago
aheinzel • 110
0
Votes
1
Reply
401
Views
Need some help interpreting Michigan Server Imputation output statistics
chromosome x imputation michigan SNP genotype
2.6 years ago
Volka • 50
0
Votes
5
Replies
1.5k
Views
VCF reference and alternative allele
vcf sequencing genome genotype
4.5 years ago
onemoreuser • 10 • updated 2.6 years ago
waakurugu.akurugu • 0
22
Votes
15
Replies
1.7k
Views
How to get sample names and genotype for SNP in multi-sample VCF file
SNP genotype GATK
3.1 years ago
hellbio • 370 • updated 2.7 years ago
Pierre Lindenbaum 120k
2
Votes
2
Replies
493
Views
How to Turn Multiple ALT alleles to Genotype Calls
Genotype
2.7 years ago
jimkozubek • 20
0
Votes
0
Replies
401
Views
Job: dbGaP Phenotypes Curator Opening at Computercraft (NCBI/NIH) in Bethesda, MD, USA
phenotype genomic dbgap genotype ncbi Job
2.7 years ago
jyu • 20
7
Votes
20
Replies
2.1k
Views
7 follow
Extracting allele, Genotype from VCF file
vcf genotype Tool allele
2.8 years ago
sukhjindermultani85 • 0 • updated 2.7 years ago
finswimmer 11k
1
Vote
2
Replies
511
Views
GT (genotype information) in haploid organism has a value of 2 .
snp genotype
2.9 years ago
shubhra.bhattacharya • 120 • updated 2.7 years ago
Biostar 20
0
Votes
1
Reply
409
Views
From read counts to genotypes, or even better, a vcf
genotype read counts vcf imputation
2.8 years ago
Joanna.ilska • 0
1
Vote
1
Reply
646
Views
Genotype representation with 0, 1, 2 - what do they mean?
genotype representation phasing imputation gwas
2.8 years ago
Volka • 50
1
Vote
4
Replies
1.1k
Views
Extracting genotypes and filtering from a VCF file containing multiple exomes of families
DNA-seq genotype filter vcf exome
2.8 years ago
gradstudentNew • 10 • updated 2.8 years ago
Pierre Lindenbaum 120k
1
Vote
1
Reply
525
Views
Coverting missing sites to reference allele using Bcftools isn't working.
bcftools vcf software error genome genotype
2.8 years ago
kirannbishwa01 • 1000 • updated 2.8 years ago
finswimmer 11k
0
Votes
1
Reply
374
Views
Wrong genotype assignation in GATK?
SNP GATK genotype VCF
2.8 years ago
Rob • 90
0
Votes
4
Replies
868
Views
Filter variants in vcf file according to genotype of particular samples?
variant filtration genotype
2.9 years ago
arsala521 • 0 • updated 2.9 years ago
finswimmer 11k
0
Votes
0
Replies
354
Views
Genetic PCA from poolseq genotype file
PCA Poolseq genotype popoolation
2.9 years ago
AP • 90
2
Votes
6
Replies
1.2k
Views
Download SNPs data
SNP genotype phenotype data
4.1 years ago
ahm3dhany • 10 • updated 2.9 years ago
Emily_Ensembl 18k
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