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Showing : genotype • reset
0
Votes
2
Replies
200
Views
genotype field in vcf file
SNP vcf genotype NGS
14 months ago
manjumoorthy95 • 10 • updated 13 months ago
Biostar 20
10
Votes
2
Replies
2.2k
Views
PCA using HapMap population data
PCA HapMap VCF genotype
4.3 years ago
eze.anokian • 10 • updated 13 months ago
zx8754 7.5k
0
Votes
2
Replies
4.1k
Views
From genotype raw data .idat to PLINK files
R sequencing genotype
6.2 years ago
Armand • 20 • updated 13 months ago
eva.gradovich • 0
1
Vote
3
Replies
519
Views
How to download SNPedia database or data dump
SNP genome next-gen gene genotype
15 months ago
sofie_carolina • 20 • updated 14 months ago
Biostar 20
0
Votes
0
Replies
116
Views
SGT and Genotype in strelka output
strelka SGT genotype
14 months ago
Shicheng Guo ♦ 7.5k
2
Votes
1
Reply
133
Views
1000 genomes genotypes interpretation
1000g genotype hom het
14 months ago
cocchi.e89 • 20
2
Votes
9
Replies
248
Views
Genotype phased and unphased
genotype phasing vcf SNP
14 months ago
manjumoorthy95 • 10 • updated 14 months ago
Pierre Lindenbaum 120k
0
Votes
0
Replies
139
Views
how to study genetic correlation between two traits
GWAS genotype genetic correlations
14 months ago
lilingjoyo • 30 • updated 14 months ago
genomax 68k
0
Votes
0
Replies
178
Views
Michigan imputation server quality control failed
imputation genotype
15 months ago
Phoenix Mu • 0
0
Votes
0
Replies
156
Views
Getting intensities using apt-genotype-axiom
genotype assembly PMRA Affymetrix
16 months ago
Genotepes • 940 • updated 16 months ago
zx8754 7.5k
0
Votes
0
Replies
139
Views
refine population phased haplotypes by pedigree
phasing genotype pedigree population
16 months ago
samuelandjw • 20
0
Votes
1
Reply
250
Views
Converting GL value to GT format of vcf data
SNP genotype
16 months ago
monjura.afrin • 0 • updated 16 months ago
finswimmer 11k
2
Votes
3
Replies
339
Views
getting the HOM_REF genotypes using bcftools mpileup+call ?
bcftools call mpileup variant genotype
17 months ago
Pierre Lindenbaum 120k • updated 17 months ago
RamRS 21k
5
Votes
7
Replies
1.3k
Views
Extracting certain columns from VCF file
vcf vcftools genotype exome question
2.1 years ago
gradstudentNew • 10 • updated 18 months ago
zx8754 7.5k
0
Votes
0
Replies
198
Views
Strain Assignments to QTL Data
MUGA QTL RQTL2 Illumina Genotype
18 months ago
annacsalvador • 0
4
Votes
6
Replies
494
Views
Attaching genotypes in the vcf files to individual ID
genotype
2.2 years ago
Ana • 170 • updated 18 months ago
zx8754 7.5k
4
Votes
1
Reply
288
Views
Genotypes from different strand for same variant position
genotype strand
19 months ago
first • 30 • updated 19 months ago
finswimmer 11k
0
Votes
1
Reply
1.1k
Views
Log-tranformation and GWAS
gwas transformation genotype statistics logarithm
2.2 years ago
rednalf • 50 • updated 19 months ago
Biostar 20
1
Vote
3
Replies
297
Views
Genotype input in matrix eqtl with dosage dataset
dosage genotype eqtl
19 months ago
Molly_K • 50 • updated 19 months ago
devidjohn47 • 0
16
Votes
13
Replies
344
Views
Get genotype GT from multi-sample VCF (per chromosome)
vcf subset genotype bcftools
19 months ago
zx8754 7.5k • updated 19 months ago
Pierre Lindenbaum 120k
3
Votes
3
Replies
765
Views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype simulation SNP MAF LD
2.5 years ago
J.F.Jiang • 750 • updated 19 months ago
zx8754 7.5k
1
Vote
5
Replies
467
Views
compare and merge VCF files
VCF genotype
19 months ago
qwzhang0601 • 60 • updated 19 months ago
berrytaylor56 • 0
4
Votes
3
Replies
979
Views
Simulate genotypes based on reference genotypes with same LD structure?
plink simulate genotype ld
3.4 years ago
Veera • 90 • updated 19 months ago
Shicheng Guo ♦ 7.5k
3
Votes
4
Replies
301
Views
Counting the frequency of genotypes per row based on the calls of the first column in a data frame in R
R genotype
20 months ago
Fersal • 20 • updated 20 months ago
ATpoint 17k
4
Votes
4
Replies
329
Views
RSID for multiple alternative variants present in a single line
rsid vcf genotype
20 months ago
ognjen011 • 170
1
Vote
2
Replies
492
Views
Calculating frequencies of possible combinations of SNP genotypes in a population
genotype frequency allele
21 months ago
Volka • 50 • updated 21 months ago
Gennady Khvorykh • 90
4
Votes
6
Replies
307
Views
4/6 genotype in VCF
vcf variant calling genotype
21 months ago
ajuiwl • 30 • updated 21 months ago
Pierre Lindenbaum 120k
2
Votes
2
Replies
330
Views
Method to get all possible combinations of genotypes for a group of SNPs
combination genotype permutation python R
21 months ago
Volka • 50 • updated 21 months ago
t.kuilman • 750
0
Votes
0
Replies
1.5k
Views
Haplotype to Genotype data and linking to SNP
myposts SNP genotype haplotype
4.4 years ago
emmapead2 • 60 • updated 21 months ago
RamRS 21k
3
Votes
3
Replies
2.0k
Views
Ensembl Perl API - How to get genotype frequencies
perl api genotype genotype frequency Ensembl
4.8 years ago
entheologist33 • 70 • updated 21 months ago
zx8754 7.5k
0
Votes
1
Reply
369
Views
How to Parse a Merged VCF File into Gene-by-Gene data Across Samples?
genome exome parse vcf genotype
22 months ago
nighralf • 0
2
Votes
4
Replies
245
Views
1000 genome project - difference between "0" and "0|0"
1000 genome project genotype vcf
22 months ago
mbk0asis • 420 • updated 22 months ago
Santosh Anand 4.8k
4
Votes
10
Replies
2.0k
Views
Get multiple snps coverage (allelic depth) from bam files
bam sequencing genotype
4.6 years ago
MAPK ♦ 1.4k • updated 23 months ago
le.marcorin • 0
3
Votes
2
Replies
381
Views
How to check which samples has more uncalled genotypes in multi-sample vcf
genotype missing sample
23 months ago
BAGeno • 130 • updated 23 months ago
Pierre Lindenbaum 120k
1
Vote
8
Replies
327
Views
Problem with allele number in vcf
vcf allele number genotype
23 months ago
BAGeno • 130 • updated 23 months ago
aheinzel • 110
0
Votes
1
Reply
394
Views
Need some help interpreting Michigan Server Imputation output statistics
chromosome x imputation michigan SNP genotype
23 months ago
Volka • 50
0
Votes
5
Replies
1.5k
Views
VCF reference and alternative allele
vcf sequencing genome genotype
3.9 years ago
onemoreuser • 10 • updated 23 months ago
waakurugu.akurugu • 0
22
Votes
15
Replies
1.7k
Views
How to get sample names and genotype for SNP in multi-sample VCF file
SNP genotype GATK
2.4 years ago
hellbio • 370 • updated 2.0 years ago
Pierre Lindenbaum 120k
2
Votes
2
Replies
489
Views
How to Turn Multiple ALT alleles to Genotype Calls
Genotype
2.0 years ago
jimkozubek • 20
0
Votes
0
Replies
397
Views
dbGaP Phenotypes Curator Opening at Computercraft (NCBI/NIH) in Bethesda, MD, USA
phenotype genomic dbgap genotype ncbi Job
2.0 years ago
jyu • 20
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