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169 results • Page
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Showing :
genotype
•
reset
0
Votes
2
Replies
209
Views
genotype field in vcf file
SNP
vcf
genotype
NGS
22 months ago
manjumoorthy95
• 10
• updated 21 months ago
Biostar
20
10
Votes
2
Replies
2.2k
Views
PCA using HapMap population data
PCA
HapMap
VCF
genotype
5.0 years ago
eze.anokian
• 10
• updated 21 months ago
zx8754
7.5k
0
Votes
2
Replies
4.1k
Views
From genotype raw data .idat to PLINK files
R
sequencing
genotype
6.9 years ago
Armand
• 20
• updated 21 months ago
eva.gradovich
• 0
1
Vote
3
Replies
522
Views
How to download SNPedia database or data dump
SNP
genome
next-gen
gene
genotype
23 months ago
sofie_carolina
• 20
• updated 22 months ago
Biostar
20
0
Votes
0
Replies
119
Views
SGT and Genotype in strelka output
strelka
SGT
genotype
22 months ago
Shicheng Guo
♦ 7.5k
2
Votes
1
Reply
137
Views
1000 genomes genotypes interpretation
1000g
genotype
hom
het
22 months ago
cocchi.e89
• 20
2
Votes
9
Replies
259
Views
Genotype phased and unphased
genotype
phasing
vcf
SNP
23 months ago
manjumoorthy95
• 10
• updated 23 months ago
Pierre Lindenbaum
120k
0
Votes
0
Replies
142
Views
how to study genetic correlation between two traits
GWAS
genotype
genetic correlations
23 months ago
lilingjoyo
• 30
• updated 23 months ago
genomax
68k
0
Votes
0
Replies
181
Views
Michigan imputation server quality control failed
imputation
genotype
23 months ago
Phoenix Mu
• 0
0
Votes
0
Replies
159
Views
Getting intensities using apt-genotype-axiom
genotype
assembly
PMRA
Affymetrix
2.0 years ago
Genotepes
• 940
• updated 2.0 years ago
zx8754
7.5k
0
Votes
0
Replies
144
Views
refine population phased haplotypes by pedigree
phasing
genotype
pedigree
population
2.0 years ago
samuelandjw
• 20
0
Votes
1
Reply
254
Views
Converting GL value to GT format of vcf data
SNP
genotype
2.0 years ago
monjura.afrin
• 0
• updated 2.0 years ago
finswimmer
11k
2
Votes
3
Replies
345
Views
getting the HOM_REF genotypes using bcftools mpileup+call ?
bcftools
call
mpileup
variant
genotype
2.1 years ago
Pierre Lindenbaum
120k
• updated 2.1 years ago
RamRS
21k
5
Votes
7
Replies
1.3k
Views
Extracting certain columns from VCF file
vcf
vcftools
genotype
exome
question
2.8 years ago
gradstudentNew
• 10
• updated 2.2 years ago
zx8754
7.5k
0
Votes
0
Replies
202
Views
Strain Assignments to QTL Data
MUGA
QTL
RQTL2
Illumina
Genotype
2.2 years ago
annacsalvador
• 0
4
Votes
6
Replies
498
Views
Attaching genotypes in the vcf files to individual ID
genotype
2.8 years ago
Ana
• 170
• updated 2.2 years ago
zx8754
7.5k
4
Votes
1
Reply
290
Views
Genotypes from different strand for same variant position
genotype
strand
2.2 years ago
first
• 30
• updated 2.2 years ago
finswimmer
11k
0
Votes
1
Reply
1.1k
Views
Log-tranformation and GWAS
gwas
transformation
genotype
statistics
logarithm
2.8 years ago
rednalf
• 50
• updated 2.3 years ago
Biostar
20
1
Vote
3
Replies
303
Views
Genotype input in matrix eqtl with dosage dataset
dosage
genotype
eqtl
2.3 years ago
Molly_K
• 50
• updated 2.3 years ago
devidjohn47
• 0
16
Votes
13
Replies
352
Views
Get genotype GT from multi-sample VCF (per chromosome)
vcf
subset
genotype
bcftools
2.3 years ago
zx8754
7.5k
• updated 2.3 years ago
Pierre Lindenbaum
120k
3
Votes
3
Replies
771
Views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype
simulation
SNP
MAF
LD
3.2 years ago
J.F.Jiang
• 750
• updated 2.3 years ago
zx8754
7.5k
1
Vote
5
Replies
479
Views
compare and merge VCF files
VCF
genotype
2.3 years ago
qwzhang0601
• 60
• updated 2.3 years ago
berrytaylor56
• 0
4
Votes
3
Replies
1.0k
Views
Simulate genotypes based on reference genotypes with same LD structure?
plink
simulate
genotype
ld
4.0 years ago
Veera
• 90
• updated 2.3 years ago
Shicheng Guo
♦ 7.5k
3
Votes
4
Replies
302
Views
Counting the frequency of genotypes per row based on the calls of the first column in a data frame in R
R
genotype
2.3 years ago
Fersal
• 20
• updated 2.3 years ago
ATpoint
17k
4
Votes
4
Replies
333
Views
RSID for multiple alternative variants present in a single line
rsid
vcf
genotype
2.4 years ago
ognjen011
• 170
1
Vote
2
Replies
498
Views
Calculating frequencies of possible combinations of SNP genotypes in a population
genotype
frequency
allele
2.4 years ago
Volka
• 50
• updated 2.4 years ago
Gennady Khvorykh
• 90
4
Votes
6
Replies
318
Views
4/6 genotype in VCF
vcf
variant calling
genotype
2.4 years ago
ajuiwl
• 30
• updated 2.4 years ago
Pierre Lindenbaum
120k
2
Votes
2
Replies
336
Views
Method to get all possible combinations of genotypes for a group of SNPs
combination
genotype
permutation
python
R
2.4 years ago
Volka
• 50
• updated 2.4 years ago
t.kuilman
• 750
0
Votes
0
Replies
1.5k
Views
Haplotype to Genotype data and linking to SNP
myposts
SNP
genotype
haplotype
5.0 years ago
emmapead2
• 60
• updated 2.5 years ago
RamRS
21k
3
Votes
3
Replies
2.0k
Views
Ensembl Perl API - How to get genotype frequencies
perl api
genotype
genotype frequency
Ensembl
5.5 years ago
entheologist33
• 70
• updated 2.5 years ago
zx8754
7.5k
0
Votes
1
Reply
374
Views
How to Parse a Merged VCF File into Gene-by-Gene data Across Samples?
genome
exome
parse
vcf
genotype
2.5 years ago
nighralf
• 0
2
Votes
4
Replies
250
Views
1000 genome project - difference between "0" and "0|0"
1000 genome project
genotype
vcf
2.5 years ago
mbk0asis
• 420
• updated 2.5 years ago
Santosh Anand
4.8k
4
Votes
10
Replies
2.0k
Views
Get multiple snps coverage (allelic depth) from bam files
bam
sequencing
genotype
5.3 years ago
MAPK
♦ 1.4k
• updated 2.6 years ago
le.marcorin
• 0
3
Votes
2
Replies
386
Views
How to check which samples has more uncalled genotypes in multi-sample vcf
genotype
missing
sample
2.6 years ago
BAGeno
• 130
• updated 2.6 years ago
Pierre Lindenbaum
120k
1
Vote
8
Replies
335
Views
Problem with allele number in vcf
vcf
allele number
genotype
2.6 years ago
BAGeno
• 130
• updated 2.6 years ago
aheinzel
• 110
0
Votes
1
Reply
401
Views
Need some help interpreting Michigan Server Imputation output statistics
chromosome x
imputation
michigan
SNP
genotype
2.6 years ago
Volka
• 50
0
Votes
5
Replies
1.5k
Views
VCF reference and alternative allele
vcf
sequencing
genome
genotype
4.5 years ago
onemoreuser
• 10
• updated 2.6 years ago
waakurugu.akurugu
• 0
22
Votes
15
Replies
1.7k
Views
How to get sample names and genotype for SNP in multi-sample VCF file
SNP
genotype
GATK
3.1 years ago
hellbio
• 370
• updated 2.7 years ago
Pierre Lindenbaum
120k
2
Votes
2
Replies
493
Views
How to Turn Multiple ALT alleles to Genotype Calls
Genotype
2.7 years ago
jimkozubek
• 20
0
Votes
0
Replies
401
Views
Job:
dbGaP Phenotypes Curator Opening at Computercraft (NCBI/NIH) in Bethesda, MD, USA
phenotype
genomic
dbgap
genotype
ncbi
Job
2.7 years ago
jyu
• 20
7
Votes
20
Replies
2.1k
Views
7 follow
Extracting allele, Genotype from VCF file
vcf
genotype
Tool
allele
2.8 years ago
sukhjindermultani85
• 0
• updated 2.7 years ago
finswimmer
11k
1
Vote
2
Replies
511
Views
GT (genotype information) in haploid organism has a value of 2 .
snp
genotype
2.9 years ago
shubhra.bhattacharya
• 120
• updated 2.7 years ago
Biostar
20
0
Votes
1
Reply
409
Views
From read counts to genotypes, or even better, a vcf
genotype
read counts
vcf
imputation
2.8 years ago
Joanna.ilska
• 0
1
Vote
1
Reply
646
Views
Genotype representation with 0, 1, 2 - what do they mean?
genotype
representation
phasing
imputation
gwas
2.8 years ago
Volka
• 50
1
Vote
4
Replies
1.1k
Views
Extracting genotypes and filtering from a VCF file containing multiple exomes of families
DNA-seq
genotype
filter
vcf
exome
2.8 years ago
gradstudentNew
• 10
• updated 2.8 years ago
Pierre Lindenbaum
120k
1
Vote
1
Reply
525
Views
Coverting missing sites to reference allele using Bcftools isn't working.
bcftools
vcf
software error
genome
genotype
2.8 years ago
kirannbishwa01
• 1000
• updated 2.8 years ago
finswimmer
11k
0
Votes
1
Reply
374
Views
Wrong genotype assignation in GATK?
SNP
GATK
genotype
VCF
2.8 years ago
Rob
• 90
0
Votes
4
Replies
868
Views
Filter variants in vcf file according to genotype of particular samples?
variant filtration
genotype
2.9 years ago
arsala521
• 0
• updated 2.9 years ago
finswimmer
11k
0
Votes
0
Replies
354
Views
Genetic PCA from poolseq genotype file
PCA
Poolseq
genotype
popoolation
2.9 years ago
AP
• 90
2
Votes
6
Replies
1.2k
Views
Download SNPs data
SNP
genotype
phenotype
data
4.1 years ago
ahm3dhany
• 10
• updated 2.9 years ago
Emily_Ensembl
18k
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