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140 results • Page
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Showing :
filter
•
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0
Votes
5
Replies
1.3k
Views
vcf filtering and query
vcf
query
filter
5.2 years ago
joaofadista
• 50
• updated 20 months ago
Biostar
20
0
Votes
4
Replies
246
Views
BCF Tools Filter on 1000Genomes Annotation
bcftools
vcftools
annotation
filter
21 months ago
jon.klonowski
• 10
2
Votes
6
Replies
307
Views
How to filter sequencing reads in a fastq file by size?
RNA-Seq
Ribo-Seq
fastq
size
filter
21 months ago
Beginner
• 0
• updated 21 months ago
emeline.a.favreau
• 20
1
Vote
4
Replies
273
Views
Filtering BAM file to include PE reads that did not map, even though their mate did
BAM
samtools
filter
mapping
read
21 months ago
nute11a
• 0
• updated 21 months ago
Istvan Albert
87k
1
Vote
1
Reply
167
Views
Filter read level data after RNA-seq alignment
RNA-Seq
Alignment
Filter
Reads
23 months ago
mohammedtoufiq91
• 40
0
Votes
5
Replies
459
Views
Filtering Read Quality - Cant remove all reads that have a single base below a threshold
filter
fastx
quality-score
sequencing
2.1 years ago
tbb21
• 10
• updated 23 months ago
Biostar
20
3
Votes
2
Replies
234
Views
filter gene expression matrix
filter
gene expression
23 months ago
Sam
• 110
• updated 23 months ago
finswimmer
11k
6
Votes
5
Replies
199
Views
Sequence identity between sequences with different lengths
sequence
identity
alignment
filter
mummer
23 months ago
ricardoguerreiro2121
• 20
• updated 23 months ago
Bastien Hervé
4.2k
24
Votes
6
Replies
11k
Views
Filtering Paired End Reads
fastq
fastx
filter
10.5 years ago
brentp
23k
• updated 24 months ago
Biostar
20
7
Votes
6
Replies
1.3k
Views
1000Genome SV integrated map's power for SV filter
1000 genome project
structural variation
filter
4.8 years ago
michealsmith
• 740
• updated 2.1 years ago
LGMgeo
• 90
0
Votes
9
Replies
416
Views
bcftools filtering INFO column issues (empty output)
bcftools
filter
vcf
missing
INFO
2.2 years ago
Molly_K
• 50
12
Votes
7
Replies
1.6k
Views
Remove a list of positions form a VCF file
SNP
vcf
filter
4.2 years ago
shinken123
• 80
• updated 2.2 years ago
zx8754
7.5k
1
Vote
1
Reply
217
Views
Using repeat region filter post QC
ngs
exome
filter
repeats
2.2 years ago
zx8754
7.5k
• updated 2.2 years ago
Pierre Lindenbaum
120k
0
Votes
0
Replies
169
Views
Simultaneous vs sequential marker filters
SNP
filter
order
2.2 years ago
zvezdoma
• 0
0
Votes
2
Replies
233
Views
basic command in bash
RNA-Seq
filter
grep
2.2 years ago
luzglongoria
• 20
0
Votes
4
Replies
264
Views
Filtering SAM file based on column numbers
SAM
FILTER
alignment
2.2 years ago
elena.syp
• 0
• updated 2.2 years ago
Pierre Lindenbaum
120k
16
Votes
3
Replies
2.9k
Views
A Grep For Gene Ontology ?
gene
filter
10.8 years ago
Pierre Lindenbaum
120k
• updated 2.4 years ago
RamRS
21k
1
Vote
2
Replies
299
Views
Using one bam file with huge coverage, How to generate several bam files with different coverage
bam
filter
SNPs
caller
2.4 years ago
tarek.mohamed
• 250
• updated 2.4 years ago
WouterDeCoster
39k
3
Votes
5
Replies
419
Views
Error while trying to filter a .vcf.gz file with a bed.gz file
filter
error
bed
bed file
2.4 years ago
ricfoz
• 30
• updated 2.4 years ago
RamRS
21k
1
Vote
2
Replies
276
Views
GEO search filtering
geo
rnaseq
filter
2.4 years ago
cilgaiscan
• 50
• updated 2.4 years ago
btsui
• 290
0
Votes
5
Replies
427
Views
Filter Alt Reads from BAM at List of Known Het Sites
BAM
Reads
Filter
2.5 years ago
alongalor
• 0
6
Votes
1
Reply
670
Views
(Sanity check) Too many SNPs?
next-gen
variant
filter
3.2 years ago
rightmirem
• 60
• updated 2.5 years ago
Biostar
20
3
Votes
2
Replies
499
Views
Extracting Cumulative (Rare) Allele Frequencies for a Subset of Variants From a VCF
vcf
filter
rare variant tests
enrichment
2.5 years ago
maegsul
• 140
• updated 2.5 years ago
Pierre Lindenbaum
120k
0
Votes
0
Replies
521
Views
GOexpress analysis, removing genes with a score of 0?
RNA-Seq
GOexpress
Expressio set
filter
remove
2.6 years ago
draper
• 0
6
Votes
6
Replies
449
Views
Filter sam/bam files
GBS
sam
bam
filter
samtools
2.6 years ago
ramesh.8v
• 200
• updated 2.6 years ago
swbarnes2
5.7k
1
Vote
1
Reply
409
Views
Filtering reads on the basis of percentage of ambiguous(N's) characters
fastq
RNA-Seq
filter
2.6 years ago
Varun Gupta
♦ 1.1k
• updated 2.6 years ago
Pierre Lindenbaum
120k
1
Vote
4
Replies
1.1k
Views
Extracting genotypes and filtering from a VCF file containing multiple exomes of families
DNA-seq
genotype
filter
vcf
exome
2.7 years ago
gradstudentNew
• 10
• updated 2.7 years ago
Pierre Lindenbaum
120k
2
Votes
3
Replies
372
Views
Filtering GO terms by neuromuscular processes
go
filter
protein
interactions
disease
2.7 years ago
Swimming bird
• 10
• updated 2.7 years ago
jean.elbers
♦ 1.1k
2
Votes
1
Reply
272
Views
Using the ranking value to filter
RNA-Seq
discosnp
discosnp++
variantcalling
filter
2.8 years ago
vguerracanedo
• 10
• updated 2.8 years ago
pierre.peterlongo
• 840
1
Vote
1
Reply
834
Views
How to filter VCF where at least x% of the individuals have DP>=10 and GQ>=20
vcf
filter
gatk
3.0 years ago
hellbio
• 370
• updated 3.0 years ago
Pierre Lindenbaum
120k
0
Votes
1
Reply
538
Views
remove lowly expressed genes by selecting genes that had FPKM > 0
RNA-Seq
filter
3.0 years ago
DataFanatic
• 130
0
Votes
2
Replies
537
Views
Use Blast for the three species of Leishmania in order to take only the common sequences in fasta file
blast
leismania
filter
sequences
fasta
3.2 years ago
dzisis1986
• 20
• updated 3.0 years ago
Biostar
20
2
Votes
3
Replies
601
Views
Filter SNP's for no more than 3 mismatches per 10 bp window
SNP
filter
mismatch
gatk
3.1 years ago
shubhra.bhattacharya
• 120
• updated 3.1 years ago
Pierre Lindenbaum
120k
1
Vote
4
Replies
529
Views
Opinion on Quality basecall threshold to use
qual
quality
vcf
filter
3.1 years ago
ricfoz
• 30
0
Votes
14
Replies
1.1k
Views
filter multisample vcf based on per-sample average read depth
vcf
filter
variant call
read depth
3.1 years ago
agathejouet
• 0
• updated 3.1 years ago
Pierre Lindenbaum
120k
8
Votes
5
Replies
1.2k
Views
Tool:
Sequence filtration tool
fasta
sequence
tool
filter
Tool
3.1 years ago
Eslam Samir
• 100
1
Vote
1
Reply
546
Views
problem to filter freq from vcf produced with varscan
varscan2
filter
vcf
SnpSift
3.2 years ago
fabbri.marco
• 0
2
Votes
3
Replies
703
Views
vcf filter dp
vcf
filter
DP
3.2 years ago
chengyi31000
• 10
• updated 3.2 years ago
RamRS
21k
1
Vote
3
Replies
864
Views
vcf file filter
filter
vcf
SNPs
minor allele homozygotes
3.2 years ago
DataFanatic
• 130
• updated 3.2 years ago
Pierre Lindenbaum
120k
0
Votes
1
Reply
1.2k
Views
Help - GATK Variant filtration by AD/DP not working
GATK
VariantFiltration
Filter
VCF
3.3 years ago
manimozhi26
• 0
62
Votes
18
Replies
36k
Views
14 follow
Extract Sub-Set Of Regions From Vcf File
vcf
tabix
genome
filter
8.6 years ago
Rubal7
• 760
• updated 3.3 years ago
geocarvalho
• 110
0
Votes
2
Replies
1.0k
Views
CNVnator output filter
CNV
filter
3.4 years ago
zhang248
• 30
• updated 3.3 years ago
ChrisJ
• 0
2
Votes
1
Reply
1.2k
Views
Extract reads from specific target in .bam file
bam
filter
3.3 years ago
Picasa
• 390
1
Vote
3
Replies
659
Views
Filtering by specific genotype VCF
vcf
genotype
filter
3.6 years ago
virpatel3
• 20
• updated 3.4 years ago
agata88
• 790
0
Votes
4
Replies
859
Views
Maximum Depth Filter
VCF
Filter
Maximum Depth
3.5 years ago
ATpoint
17k
• updated 3.5 years ago
Pierre Lindenbaum
120k
0
Votes
4
Replies
1.7k
Views
Filter SNPs on depth
SNP
Filter
depth
vcftools
minDP
3.6 years ago
Covux
• 10
• updated 3.6 years ago
Istvan Albert
87k
0
Votes
1
Reply
647
Views
Filter pileup file for completeness
samtools
pileup
filter
completeness
3.8 years ago
AP
• 90
3
Votes
10
Replies
1.3k
Views
filtering out reads from bam file
bam
gff3
filter
RNA-seq
3.8 years ago
sgmiriuka
• 0
• updated 3.8 years ago
Alex Reynolds
28k
0
Votes
1
Reply
595
Views
Filter FASTQ by length job "currently running" for 24+ hrs. (in Galaxy)
fastq
filter
stuck
3.8 years ago
Wowbaggerz
• 0
2
Votes
3
Replies
1.0k
Views
bamtools filter specific motif sequence
bamtools
filter
motif
3.8 years ago
devin.porter92
• 0
• updated 3.8 years ago
Pierre Lindenbaum
120k
140 results • Page
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