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40 results • Page
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Showing :
extract
•
reset
5
Votes
4
Replies
160
Views
How to extract reads which contain specific sequence from fastq file
fastq
reads
extract
19 months ago
hsu
• 0
• updated 19 months ago
WouterDeCoster
39k
0
Votes
3
Replies
160
Views
Extract 10 matches in BLAST
blast
extract
22 months ago
gkalgus
• 0
• updated 22 months ago
h.mon
25k
1
Vote
4
Replies
402
Views
How to extract intronic regions from a Genbank file?
python
intron
genome
extract
2.1 years ago
Evergreen
• 0
• updated 23 months ago
Alex Reynolds
28k
3
Votes
3
Replies
268
Views
Extract info on OMIM Phenotype
OMIM
database
extract
24 months ago
Nandini
• 810
• updated 24 months ago
genomax
68k
3
Votes
4
Replies
1.3k
Views
Extract SNPs and SNP ID's from vcf file
1000Genomes
SNPs
extract
VCF
3.2 years ago
aadhirareddy1323
• 20
• updated 2.1 years ago
zx8754
7.5k
0
Votes
2
Replies
2.4k
Views
Glimmer 3 multi-extract input problem
glimmer
extract
6.5 years ago
thepunkoklos
• 0
• updated 2.2 years ago
maxwhjohn1988
• 70
3
Votes
11
Replies
3.2k
Views
Extract sequence from fasta using primer
pcr
fasta
primer
extract
4.3 years ago
sacha
♦ 1.7k
• updated 2.2 years ago
m.schmitt
• 0
2
Votes
5
Replies
521
Views
What is a faster way than using bcftool's view to extract a population from 1000 Genome VCF files?
bcftools
1000
vcf
subset
extract
2.4 years ago
Volka
• 50
• updated 2.4 years ago
chrchang523
5.2k
3
Votes
5
Replies
371
Views
GFF3 to fasta (error)
gff3
fasta
extract
file
2.6 years ago
wocana
• 10
8
Votes
11
Replies
3.0k
Views
7 follow
Extract fasta sequences from a file using a list in another file.
fasta
header
extract
awk
grep
2.6 years ago
EBP91
• 0
• updated 2.6 years ago
cpad0112
11k
8
Votes
7
Replies
578
Views
6 follow
How to extract specific rows based on row number from a file
shell
file-handling
extract
2.7 years ago
vinayjrao
• 120
• updated 2.7 years ago
shenwei356
4.6k
3
Votes
9
Replies
587
Views
using awk to extract a specific pattern
gff
extract
awk
parsing
2.7 years ago
Darill
• 30
0
Votes
8
Replies
524
Views
Sequence extract from multifasta using blastall coordinates
sequence
blastall
extract
2.8 years ago
chland
• 0
• updated 2.8 years ago
h.mon
25k
2
Votes
2
Replies
935
Views
Extract SNPs by position from gvcf
gvcf
extract
SNP
position
2.8 years ago
wangdavid758
• 20
• updated 2.8 years ago
Pierre Lindenbaum
120k
0
Votes
1
Reply
524
Views
How to extract and save the header of .bam,vcf and idat files in a text file
bam
ida
vcf
extract
header
2.9 years ago
nsonkole
• 0
• updated 2.9 years ago
ATpoint
17k
0
Votes
2
Replies
598
Views
How to extract variable nucleotide regions from a list of contigs
blast
contig
extract
refseq
3.1 years ago
kayrouz.1
• 0
• updated 3.1 years ago
Vijay Lakhujani
4.1k
1
Vote
10
Replies
916
Views
Extract pairs of sequences from a fasta file based on a CSV list of headers
fasta
extract
3.3 years ago
ajsakla
• 0
• updated 3.3 years ago
st.ph.n
♦ 2.5k
13
Votes
13
Replies
6.1k
Views
6 follow
How to extract the longest isoform from multi fasta file
fasta
extract
isoform
perl
python
6.5 years ago
jon.brate
• 220
• updated 3.7 years ago
Biostar
20
4
Votes
7
Replies
1.6k
Views
Extracting 200bp flanking sequence around a snp using Bedtools
SNP
Flanking sequences
Bedtools
Extract
4.0 years ago
paulotyama
• 0
• updated 4.0 years ago
geek_y
9.7k
6
Votes
4
Replies
1.3k
Views
Extract a specific subsequence from a fasta file
fatsa
sequence
extract
4.0 years ago
PAn
• 20
• updated 4.0 years ago
IP
• 550
3
Votes
6
Replies
1.1k
Views
Extract fastq reads from reads list
python
fastq
extract
SeqIO
4.1 years ago
felipelira3
• 0
0
Votes
1
Reply
923
Views
Extract aligned parts of sequence to reference to new file
alignment
extract
python
4.2 years ago
claudia.paetzold
• 0
• updated 4.2 years ago
Juan Manuel Berros
• 80
5
Votes
8
Replies
1.9k
Views
Extracting the Country from a >200 sequences Genbank file
phylogenetics
python
genbank
extract
bipython
4.2 years ago
tpaisie
• 70
• updated 4.2 years ago
Juan Manuel Berros
• 80
4
Votes
6
Replies
1.3k
Views
Extract DNA sequence based on a single coordinate
extract
seq
R
python
4.4 years ago
ThePresident
• 110
6
Votes
3
Replies
1.4k
Views
Perl one liner to extract sequences by their ID from a FASTA file - help
fasta
perl
novice
extract
4.5 years ago
pendragon
• 50
• updated 4.5 years ago
RamRS
21k
1
Vote
0
Replies
1.0k
Views
extract genomic sequence based on transcripts
genome
transcripts
FASTA
extract
coordinates
4.6 years ago
lay_0
• 50
• updated 4.6 years ago
RamRS
21k
5
Votes
5
Replies
1.3k
Views
How to extract upper/lowercase from fasta to output position and +/-
uppercase
lowercase
fasta
extract
4.7 years ago
MJS
• 0
5
Votes
6
Replies
6.0k
Views
extract columns from file based on header selected from 2nd file
extract
columns
ID
5.2 years ago
joaofadista
• 50
• updated 5.2 years ago
Antonio R. Franco
♦ 4.0k
2
Votes
5
Replies
1.2k
Views
[Resolved] Extract Top score peaks from a .bed
bed
extract
5.2 years ago
giroudpaul
• 50
0
Votes
4
Replies
1.6k
Views
biomaRt: Extracting data for a particular isoform (R/bioconductor)
biomart
bioconductor
utr
extract
5.7 years ago
bsmith030465
• 140
• updated 5.6 years ago
Biostar
20
2
Votes
4
Replies
2.0k
Views
R script to extract sequences using seqinr returns Error Subscript out of bounds?
R
sequence
fasta
extract
debug
5.7 years ago
oliver.bayfield
• 110
22
Votes
50
Replies
8.9k
Views
7 follow
Extract fasta sequences from a large file using a list of names
16s
fasta
extract
5.7 years ago
fhsantanna
• 440
• updated 5.7 years ago
h.mon
25k
1
Vote
1
Reply
1.3k
Views
bcftools extract data
bcftools
extract
5.8 years ago
sacha
♦ 1.7k
5
Votes
4
Replies
4.4k
Views
How to extract properly paired alignments from a bam file using samtools?
samtools
extract
properly paired
5.9 years ago
pedrodcb
• 50
0
Votes
2
Replies
1.6k
Views
GEO datasets for the eqtl analysis
GEO
eqtl
extract
6.0 years ago
P.NJ
• 50
6
Votes
4
Replies
8.0k
Views
How to extract DNA sequences for individual genes from GenBank complete genome files using biopython?
parsing
genbank
genomes
biopython
extract
6.1 years ago
cq151
• 10
2
Votes
7
Replies
3.1k
Views
Extract files with xxx_somenumber_yyyy.zzz.vcf
bash
xargs
extract
files
6.3 years ago
shanika.amarasinghe
• 30
• updated 6.3 years ago
RamRS
21k
4
Votes
7
Replies
3.5k
Views
Extract rows from BED file on the base of text content in one column
bed
extract
bedtools
unix
6.5 years ago
mujupas
• 50
1
Vote
4
Replies
1.1k
Views
extract sequence from genome based on homologues with a sequence
extract
sequence
genome
homologues
biopython
6.5 years ago
halima.loulou
• 0
2
Votes
5
Replies
1.4k
Views
normalised data file extract values to do calculation
normalized
extract
matrix
R
6.7 years ago
cara78
• 10
• updated 6.7 years ago
rmnc2007
• 0
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