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Showing : cwl • reset
0
Votes
0
Replies
77
Views
Rename file in CWL ExpressionTool?
cwl file management
19 months ago
alanh • 50
2
Votes
4
Replies
137
Views
CWL docker command user
cwl docker cwl-runner
19 months ago
dganiewich • 60 • updated 19 months ago
Tom • 250
1
Vote
4
Replies
133
Views
CWL :Append the ref input used in toolkit
cwl
19 months ago
lizhichao • 0
0
Votes
2
Replies
143
Views
bedtools sort -faidx in CWL
CWL bedtools sort
19 months ago
dami • 0
0
Votes
0
Replies
93
Views
Is there a schema for CWL inputs/job files?
cwl
19 months ago
karl.sebby • 50
5
Votes
3
Replies
154
Views
interesting behavior with grep
cwl
20 months ago
ionox0 • 370
1
Vote
1
Reply
127
Views
CWL limit number of job instances created through scatter
CWL scatter queue resource management
20 months ago
silverspanch • 10 • updated 20 months ago
Michael R. Crusoe ♦ 1.5k
2
Votes
1
Reply
1.3k
Views
CWL: SLurm Job Sheduler
cwl slurm
3.6 years ago
kevin.o.oluoch • 70 • updated 20 months ago
Biostar 20
7
Votes
11
Replies
283
Views
Combine subject with sample type in a scatter?
cwl
20 months ago
alanh • 50
2
Votes
4
Replies
155
Views
CWL join two dimensional file array output
cwl workflow scatter
20 months ago
silverspanch • 10 • updated 20 months ago
Tom • 250
1
Vote
1
Reply
143
Views
How to stop removing last slash of directory parameter in cwl?
cwl cwltool
20 months ago
sshinya • 10
0
Votes
1
Reply
149
Views
Can I use output eval with CWL to create the list of output files (i.e. replace the glob results)?
CWL Common Workflow Language
20 months ago
mavrommatis.konstantinos • 0
2
Votes
2
Replies
185
Views
CWLtools version problem with usage of secondary files and java expression
CWL
20 months ago
a.james • 190
0
Votes
1
Reply
144
Views
[cwl workflow steps] explicit I/O relationship, workflow
cwl
21 months ago
billy0210828 • 0 • updated 20 months ago
kaushik.ghose • 50
2
Votes
1
Reply
213
Views
cwl kubernetes support?
cwl
20 months ago
xiao2 • 0 • updated 20 months ago
kaushik.ghose • 50
0
Votes
0
Replies
264
Views
Job: Python Software Engineer with Experience with Workflow Management, Whitefish, MT
cwl python wdl Job
21 months ago
karl.sebby • 50
7
Votes
2
Replies
235
Views
Output going to stdout?
cwl
21 months ago
ForrestBear • 30 • updated 21 months ago
Michael R. Crusoe ♦ 1.5k
1
Vote
0
Replies
181
Views
Difference between TMPDIR environment variable, --workdir in Toil / CWL
cwl toil
21 months ago
ionox0 • 370
2
Votes
2
Replies
424
Views
CWL to check the output directory and run for non-existing files
CWL RNA-seq next-gen
22 months ago
a.james • 190
13
Votes
9
Replies
276
Views
Markduplicates did not find output file with glob pattern
cwl
22 months ago
yifan wang • 10 • updated 22 months ago
Michael R. Crusoe ♦ 1.5k
1
Vote
1
Reply
193
Views
ExpressionTool failing after a scatter: How do I debug the Javascript?
cwl workflow javascript expressiontool
22 months ago
alanh • 50
0
Votes
1
Reply
218
Views
CWL in toil
CWL Toil
22 months ago
a.james • 190
2
Votes
1
Reply
265
Views
cwltool --print-dot generate same format as cwl viewer
cwl cwlviewer
23 months ago
tony • 0 • updated 23 months ago
Michael R. Crusoe ♦ 1.5k
0
Votes
2
Replies
165
Views
CWL: Organise outputs in subdirectories
cwl subdir
23 months ago
mareq • 0 • updated 23 months ago
Tom • 250
2
Votes
7
Replies
252
Views
CWL: nameext not returning expected array
cwl expressionTool
23 months ago
ForrestBear • 30 • updated 23 months ago
Tom • 250
3
Votes
2
Replies
266
Views
CWL BWA-MEM RG fields from string parameters - use several input strings to generate a single input string
cwl bwa-mem
23 months ago
dganiewich • 60 • updated 23 months ago
Tom • 250
2
Votes
2
Replies
213
Views
CWL for star for multiple bam files with javascript expression
CWL
23 months ago
a.james • 190 • updated 23 months ago
Pierre Lindenbaum 120k
2
Votes
1
Reply
264
Views
CWL LoadListing - cwltool can't handle large number of input files
cwl
23 months ago
Tom • 250
5
Votes
5
Replies
288
Views
Why is ShellCommandRequirement necessary for Pipes
cwl
23 months ago
ionox0 • 370
3
Votes
4
Replies
268
Views
CWL NO JSON object could be decoded
CWL JSON
23 months ago
yifan wang • 10 • updated 23 months ago
Tom • 250
3
Votes
1
Reply
310
Views
Can I use CWL with Amazon's Simple Workflow Service?
amazon interoperability cwl
23 months ago
lewis.mcgibbney • 10 • updated 23 months ago
Tom • 250
3
Votes
4
Replies
277
Views
CWL Workflow removing input files
cwl Deepbinner
23 months ago
Tom • 250
3
Votes
4
Replies
279
Views
CWL to write into for writing lines one from one file to new file
CWL
23 months ago
a.james • 190
0
Votes
0
Replies
242
Views
CWL toil-cwl-runner for two samples, could not find a error log and reason for failure
cwl
23 months ago
a.james • 190
3
Votes
7
Replies
440
Views
CWL with R returns empty output directory with "Final process status is success" status
CWL RNA-Seq
24 months ago
a.james • 190
5
Votes
6
Replies
324
Views
CWL can't find tools it's supposed to run
CWL Deepbinner
24 months ago
Tom • 250 • updated 24 months ago
Michael R. Crusoe ♦ 1.5k
0
Votes
3
Replies
311
Views
Upgrade to Toil 3.18 no longer allows optional parameters to be omitted when passed through subworkflow
cwl toil
2.0 years ago
ionox0 • 370
3
Votes
3
Replies
369
Views
load/parse cwl using Java
cwl
2.1 years ago
pr80ik • 20 • updated 2.1 years ago
denis.yuen • 90
3
Votes
4
Replies
1.9k
Views
CWL: How to refer to input or scattered value of a step
CWL
4.0 years ago
mkher • 30 • updated 2.1 years ago
jshelton • 0
2
Votes
1
Reply
231
Views
Creating a temporary directory for tools to use
cwl
2.1 years ago
ionox0 • 370
2
Votes
1
Reply
329
Views
CWL pipe doesn't seem to be working (Solved: user error)
cwl
2.1 years ago
ionox0 • 370
0
Votes
1
Reply
1.2k
Views
Getting started with CWL: Unrecognized version v1.0?
cwl
4.3 years ago
sb10 • 40 • updated 2.1 years ago
Biostar 20
3
Votes
3
Replies
263
Views
How to specify enum symbols in record type definition?
cwl
2.2 years ago
ionox0 • 370 • updated 2.1 years ago
Michael R. Crusoe ♦ 1.5k
1
Vote
2
Replies
299
Views
How to run SPAdes inside docker?
cwl docker container
2.2 years ago
jeetsahu • 10 • updated 2.1 years ago
Michael R. Crusoe ♦ 1.5k
2
Votes
3
Replies
442
Views
Load/parse cwl in python
cwl
2.2 years ago
johnegarza • 0 • updated 2.2 years ago
Michael R. Crusoe ♦ 1.5k
1
Vote
9
Replies
935
Views
cwl for h3abionet16s pipeline failing with non-docker option
cwl
4.1 years ago
Shakuntala Baichoo • 0 • updated 2.2 years ago
Biostar 20
1
Vote
5
Replies
611
Views
CWL: How to return int or string[] from CommandLineTool?
CWL
2.2 years ago
uagrif • 10 • updated 2.2 years ago
Michael R. Crusoe ♦ 1.5k
0
Votes
0
Replies
524
Views
Did not find output file with glob pattern: for creating runtime output directory in CWL
CWL
2.2 years ago
a.james • 190
0
Votes
2
Replies
437
Views
cwltool issue using SoftwareRequirement
cwl cwltool Tool
2.2 years ago
sf21 • 10
7
Votes
10
Replies
518
Views
best practice for renaming file in CWL workflow
cwl
2.3 years ago
ionox0 • 370 • updated 2.3 years ago
Michael R. Crusoe ♦ 1.5k
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