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111 results • Page
1 of 3
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Showing :
contigs
•
reset
2
Votes
4
Replies
210
Views
Merge contigs in fasta file
fasta
merge
contigs
22 months ago
Rubal
• 220
• updated 22 months ago
finswimmer
11k
0
Votes
3
Replies
219
Views
Prokka setupdb issue
prokka
annotation
contigs
Assembly
23 months ago
DanielC
• 80
0
Votes
0
Replies
127
Views
Gaps in sequenced DNA consensus generated from contigs
gaps
consensus
contigs
23 months ago
DanielC
• 80
2
Votes
13
Replies
396
Views
Binning Tools for Long Reads/Contigs
metagenomics
binning
long reads
contigs
23 months ago
vijinim
• 90
9
Votes
10
Replies
2.4k
Views
6 follow
Criteria for filtering contigs after spades assembly
spades
Assembly
contigs
filtering
3.1 years ago
fhsantanna
• 440
• updated 23 months ago
bhclement
• 0
2
Votes
3
Replies
285
Views
Where can I find publicly available metagenomics contig datsets?
metagenomics
datasets
contigs
2.1 years ago
vijinim
• 90
• updated 2.0 years ago
Jonathanjacobs
• 210
1
Vote
3
Replies
377
Views
assembly of contigs into scaffolds
Assembly
scaffolds
contigs
2.2 years ago
M.Nadeem Khan
• 0
• updated 2.2 years ago
shubhra.bhattacharya
• 120
3
Votes
3
Replies
281
Views
Is there a standard file format for anchored contigs?
genome
assembly
linkage map
anchor contigs
contigs
2.2 years ago
brogroh
• 0
• updated 2.2 years ago
cmdcolin
♦ 1.2k
0
Votes
3
Replies
390
Views
How to get a consensus of the contigs obtained from an assembler like spades?
contigs
consensus
spades
2.2 years ago
DanielC
• 80
4
Votes
2
Replies
319
Views
Contig name in SAM file
sam
contigs
contig
contig name
2.2 years ago
maryam.95
• 10
• updated 2.2 years ago
WouterDeCoster
39k
0
Votes
3
Replies
345
Views
How to decide how many Iontorrent reads to run for contig assembly using Mira assembler?
Mira assembler
Iointorrent
Reads
contigs
2.2 years ago
DanielC
• 80
• updated 2.2 years ago
WouterDeCoster
39k
2
Votes
2
Replies
496
Views
GATK BaseRecalibrator No overlapping contigs found ERROR
gatk
baseRecalibrator
contigs
reads
2.4 years ago
marongiu.luigi
• 380
• updated 2.4 years ago
Pierre Lindenbaum
120k
1
Vote
6
Replies
523
Views
Thousands of contigs in E.coli assembly
assembly
contigs
genome
prokka
2.5 years ago
vitorgomesbio
• 0
• updated 2.5 years ago
Biostar
20
2
Votes
5
Replies
522
Views
Order of contigs
contigs
2.5 years ago
agata88
• 790
• updated 2.5 years ago
piet
♦ 1.7k
3
Votes
7
Replies
401
Views
Tool to do Variant calling from contigs data
variant calling
contigs
2.7 years ago
de.mecquenem.ninon
• 10
0
Votes
5
Replies
578
Views
SSPACE for scaffolding
sspace
scaffolding
contigs
insert size
bbmap
2.8 years ago
deepti1rao
• 20
• updated 2.8 years ago
RamRS
21k
2
Votes
6
Replies
512
Views
Continuous alignment of contigs with reference using blast /blat
Blat
Contigs
Alignment
2.8 years ago
deepti1rao
• 20
• updated 2.8 years ago
h.mon
25k
1
Vote
1
Reply
500
Views
Annotating and predicting the genomic region of a sequenced phage
Phage
tail protein
contigs
blast
3.0 years ago
DanielC
• 80
• updated 2.9 years ago
Biostar
20
3
Votes
3
Replies
739
Views
Contig cutoff of 300 bp - why? (Trinity transcriptome assembly)
Trinity
RNA-Seq
Assembly
Contigs
3.2 years ago
BioBing
• 100
• updated 3.2 years ago
jwhan.algae
• 0
2
Votes
6
Replies
750
Views
Determining a complete genome from contigs
contigs
complete genome
3.3 years ago
Optimist
• 60
• updated 3.2 years ago
ropolocan
• 520
8
Votes
3
Replies
968
Views
Can 167 contigs in my genome be stitched in to one fasta sequence
Contigs
fasta
Genome
Bioinformatics
3.6 years ago
Optimist
• 60
• updated 3.6 years ago
Michael Dondrup
46k
11
Votes
1
Reply
2.0k
Views
Merge Scaffolds From Different Individuals?
assembly
contigs
consensus
3.6 years ago
Gabriel R.
♦ 2.6k
0
Votes
1
Reply
599
Views
Capturing whole gene sequences from WGS metagenomics sample
metagenomics
assembly
contigs
binning
3.7 years ago
Lina F
• 150
• updated 3.7 years ago
Sej Modha
4.2k
6
Votes
2
Replies
599
Views
Is there any tool to convert a contig to illumina reads?
Assembly
contigs
illumina
3.7 years ago
m.koohi.m
• 110
2
Votes
1
Reply
1.0k
Views
Difference between read and contig based taxonomic classification
classification
taxonomic
reads
contigs
3.8 years ago
BAGeno
• 130
• updated 3.7 years ago
Sej Modha
4.2k
2
Votes
8
Replies
2.2k
Views
Reference guided assembly of contigs
contigs
bacteria
Assembly
reference
tools
3.8 years ago
hman6.2.91
• 0
3
Votes
5
Replies
5.7k
Views
How to assemble contigs?
denovo
Assembly
sequencing
contigs
3.8 years ago
Paul
• 80
• updated 3.8 years ago
vmicrobio
• 240
0
Votes
3
Replies
645
Views
Split BAM file into parts with headers rebuilt
RNA-Seq
BAM
split
contigs
3.8 years ago
viktorfeketa
• 20
2
Votes
7
Replies
947
Views
How to identify the contigs for each predicted cds sequences?
genome
augustus output
cds
contigs
3.9 years ago
mirza
• 80
• updated 3.9 years ago
Joe
12k
3
Votes
4
Replies
2.3k
Views
How Can I Increase The Length Of Existing Genome Contigs Using Paired-End Reads?
genomics
assembly
contigs
scaffolding
scaffolding
8.1 years ago
aswad87
• 0
• updated 4.0 years ago
Biostar
20
1
Vote
2
Replies
800
Views
Can Scaffolds overlap?
Scaffolds
contigs
RADseq
4.2 years ago
beausoleilmo
• 230
14
Votes
18
Replies
2.5k
Views
GATK Haplotype Caller
next-gen
GATK
haplotype
caller
contigs
4.3 years ago
plink_9857
• 50
• updated 4.2 years ago
Biostar
20
0
Votes
0
Replies
1.2k
Views
How to determine number of unigenes from conigs (De Novo Assembly developed Trinity)
RNA-Seq
Assembly
gene
contigs
unigene
4.2 years ago
bilal.sarwar
• 0
0
Votes
0
Replies
692
Views
Causes of missing genes in de novo assembed resequenced bacteria
Assembly
genome
bacteria
contigs
4.3 years ago
f2369583
• 10
1
Vote
3
Replies
1.6k
Views
How to order contigs generated from PlasmidSPAdes
Assembly
alignment
contigs
4.4 years ago
mandigene94
• 10
• updated 4.3 years ago
Roye Rozov
• 90
0
Votes
0
Replies
1.8k
Views
Incompatible Contigs Issue In Mitochondria Dna
contigs
mitochondria
7.9 years ago
ckr123
• 10
• updated 4.4 years ago
Biostar
20
3
Votes
8
Replies
1.3k
Views
Making a Venn Diagram Using BLAST Results?
BLAST
metagenomics
contigs
venn diagram
4.6 years ago
sturne29
• 10
• updated 4.6 years ago
Jean-Karim Heriche
19k
2
Votes
3
Replies
2.0k
Views
How to determine number of contigs used in Trinity assembly?
contigs
rna seq
DE
trinity
assembly
4.7 years ago
nikelle.petrillo
• 100
• updated 4.7 years ago
Benn
6.9k
0
Votes
3
Replies
3.9k
Views
Tool To Create Scaffold Fasta File From An Agp And Contig Fasta File?
fasta
scaffolding
contigs
7.9 years ago
Michael R. Crusoe
♦ 1.5k
• updated 4.7 years ago
corey.wischmeyer
• 0
0
Votes
0
Replies
1.4k
Views
Error using Mauve - Why have i encountered this error?
mauve
genome
de novo
de novo assembly
contigs
4.9 years ago
sallyanndunn18
• 10
• updated 4.9 years ago
Dan D
6.8k
0
Votes
7
Replies
2.0k
Views
Split fasta file into chromosomes
chromosome
contigs
fasta
core genome
5.0 years ago
natasha
• 100
0
Votes
2
Replies
909
Views
Identifying genes from contigs (obtained from transcriptome of a fungi)
gene
contigs
transcriptome
5.0 years ago
bharat.85.monu
• 20
• updated 5.0 years ago
mikhail.shugay
3.3k
2
Votes
5
Replies
1.4k
Views
Percentage of similarity between two contigs files
Assembly
contigs
5.1 years ago
'
• 170
• updated 5.1 years ago
ALchEmiXt
♦ 1.9k
14
Votes
7
Replies
3.2k
Views
Obtain full taxonomic hierarchy from multiple species names
taxonomy
species
contigs
metagenomics
mg-rast
5.4 years ago
fibar
• 50
• updated 5.1 years ago
Biostar
20
5
Votes
7
Replies
3.5k
Views
7 follow
Snp Discovery From De Novo Assembly
contigs
snp
9.5 years ago
Ruru
• 10
• updated 5.1 years ago
chitoboy
• 0
5
Votes
7
Replies
4.8k
Views
Using Gatk, Removing Read Contigs On Bam Level
gatk
contigs
snp
9.4 years ago
Mdeng
• 520
• updated 5.2 years ago
Biostar
20
1
Vote
4
Replies
2.9k
Views
Velvet: What's the relation between kmer coverage and normal coverage?
velvet
assembly
coverage
contigs
5.2 years ago
novice
• 920
• updated 5.2 years ago
Antonio R. Franco
♦ 4.0k
3
Votes
3
Replies
1.3k
Views
Editing Contigs Browser
contigs
7.3 years ago
Biojl
♦ 1.6k
• updated 5.4 years ago
Biostar
20
0
Votes
0
Replies
1.1k
Views
Inferring most probable integer copy number (repeat count) of contigs of a draft genome
contigs
repeats
copy numbers
draft genome
5.7 years ago
misaghb
• 20
• updated 5.5 years ago
Biostar
20
5
Votes
15
Replies
3.9k
Views
How to generate contigs from bam alignment
Assembly
.bam
contigs
genome guided
5.5 years ago
goubert.clement
• 10
• updated 5.5 years ago
Manu Prestat
3.9k
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