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356 results • Page
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Showing :
clustering
•
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13
Votes
7
Replies
3.4k
Views
Is hierarchical clustering of significant genes 'supervised' or 'unsupervised' clustering?
RNA-Seq
heatmap
clustering
4.1 years ago
steve
♦ 2.0k
• updated 19 months ago
Mozart
• 130
3
Votes
2
Replies
147
Views
Adding stack bars beneath a hierarchical clustering tree to describe the percentage of a meta-variable for the occurring clusters
clustering
visualization
R
plotting
19 months ago
arronar
• 200
0
Votes
0
Replies
108
Views
How to find number of patients (percentage of given population) having high expression of gene A in given microarray data ?
R
gene
microarray
clustering
20 months ago
yuvanesh
• 0
0
Votes
2
Replies
151
Views
clustering from the minimum distance
clustering
R
20 months ago
s.kyungyong64
• 10
0
Votes
1
Reply
152
Views
ScRNA Data Clustering, FPKM file, R
RNA-Seq
R
sequence
matrix normalization
Clustering
22 months ago
bilalahmed240996
• 0
• updated 20 months ago
Biostar
20
1
Vote
1
Reply
384
Views
Which package to use for clustering with UMAP?
clustering
23 months ago
glabella85
• 0
• updated 20 months ago
steveh
• 10
0
Votes
0
Replies
111
Views
Sequence clustering based on provided genetic distances
sequence
clustering
alignment
genetic distance
20 months ago
Gon
• 10
0
Votes
0
Replies
206
Views
Correlation heatmaps: use correlation as clustering distance or not?
heatmap
RNA-Seq
clustering
21 months ago
CuriousGuy
• 20
0
Votes
1
Reply
229
Views
WGCNA Eigengene interpretation
WGCNA
Eigengene
clustering
21 months ago
rsafavi
• 40
0
Votes
3
Replies
171
Views
How to rank subclusters of a gene co-expression network identifed through community detection algorithm in igraph R package
R
gene coexpression network
clustering
21 months ago
aiswaryabioinfo
• 10
7
Votes
7
Replies
246
Views
How to cluster drugs by up/down gene lists?
gene
drug
clustering
22 months ago
Antony
• 0
• updated 22 months ago
Jean-Karim Heriche
19k
0
Votes
3
Replies
612
Views
Clustering by sequence alignments
dna
alignment
clustering
3.8 years ago
bbb
• 60
• updated 22 months ago
Biostar
20
0
Votes
2
Replies
141
Views
RadSeq and short read
RadSeq
Illumina
Clustering
22 months ago
gbl1
• 70
4
Votes
0
Replies
1.9k
Views
Tool:
Clustering of short peptide sequences
peptide
clustering
phage display
Tool
22 months ago
jockbanan
• 380
1
Vote
5
Replies
281
Views
Dunn Index for Clusters from scRNA-Seq
scRNA-Seq
clustering
dunn index
scater
scran
22 months ago
hkarakurt
• 50
33
Votes
8
Replies
14k
Views
7 follow
Clustering Gene Expression For Time Course Rna-Seq Data
rna-seq
clustering
sequencing
8.2 years ago
Abhi
♦ 1.5k
• updated 22 months ago
sabaghianamir70
• 0
2
Votes
2
Replies
326
Views
TPM and TMM, which should I use for clustering?
tpm
tmm
clustering
22 months ago
demoraesdiogo2017
• 10
• updated 22 months ago
Charles Warden
6.8k
0
Votes
1
Reply
304
Views
CNVkit Heatmap samples clustering
cnv
cnvkit
heatmap
clustering
23 months ago
jim.paredes
• 0
• updated 23 months ago
Eric T.
♦ 2.4k
5
Votes
2
Replies
334
Views
Clusters moving for same dataset and code using tSNE
tSNE
Seurat
Clustering
scRNAseq
23 months ago
chilifan
• 70
• updated 23 months ago
i.sudbery
4.7k
2
Votes
4
Replies
320
Views
Silhouette Plots for Clustering Quality (Multiple Algorithm)
R
Clustering
RNA-Seq
scRNA-Seq
23 months ago
hkarakurt
• 50
2
Votes
2
Replies
250
Views
What does cluster number in ClusterMaker represent?
cytoscape
clustering
clustermaker
network
24 months ago
Arindam Ghosh
• 160
• updated 23 months ago
scooter
• 80
1
Vote
3
Replies
713
Views
Clustering program based on NJ phylogeny
clustering
protein
NJ
Phylogeny
3.3 years ago
kgbenn123
• 10
• updated 23 months ago
gbl1
• 70
4
Votes
6
Replies
5.6k
Views
Pvclust:Error In Clustering
clustering
r
6.8 years ago
Diana
• 780
• updated 2.0 years ago
dmitry.pesko
• 0
1
Vote
1
Reply
359
Views
Gene correlation analysis after deseq2
deseq2
correlation
clustering
2.0 years ago
Biogeek
• 350
• updated 2.0 years ago
dqz377977905
• 0
3
Votes
5
Replies
329
Views
CD-HIT results without sorting by length
clustering
CD-HIT
sort
length
2.1 years ago
Anand Rao
• 210
2
Votes
1
Reply
259
Views
Unix command-line alternatives to GenomeStudio's clustering?
genotyping
clustering
2.1 years ago
kynnjo
• 20
1
Vote
2
Replies
247
Views
Cluster plots from categorical clustering
R
clustering
2.1 years ago
jmah
• 10
0
Votes
2
Replies
1.0k
Views
Redundant Group Of Proteins.
clustering
6.9 years ago
thiagomafra
• 70
• updated 2.1 years ago
Raony Guimarães
• 990
1
Vote
8
Replies
461
Views
get different heatmap from website and R
R
clustering
heatmap
excel
2.3 years ago
ebrahimi.re67
• 0
• updated 2.1 years ago
Biostar
20
4
Votes
1
Reply
292
Views
WGCNA threshold values
WGCNA
THRESHOLD
CLUSTERING
RNAseq
2.1 years ago
priyankaraina10
• 10
• updated 2.1 years ago
Kevin Blighe
43k
7
Votes
2
Replies
2.3k
Views
Comparison Of Biological Graphs/Networks
graph
clustering
network
7.3 years ago
tigeradab
• 50
• updated 2.1 years ago
kuntal.bhusan
• 20
49
Votes
47
Replies
5.6k
Views
8 follow
Tutorial:
Clustering of DAVID gene enrichment results from gene expression studies
david
clustering
gene ontology
enrichment
Tutorial
2.9 years ago
Kevin Blighe
43k
• updated 2.2 years ago
skylinesky
• 0
6
Votes
2
Replies
786
Views
How to perform PCA on gene expression?
PCA
qPCR
Clustering
Marker gene
Gene expression
2.2 years ago
Thomas B.
• 10
• updated 2.2 years ago
ahmad mousavi
• 430
10
Votes
7
Replies
472
Views
How to "Randomly" Select Genes
R
RNA-Seq
clustering
gene
2.2 years ago
Ark
• 70
0
Votes
0
Replies
478
Views
How to create a dendrogram of clusters and reconstruct phylogenetic relationship
R
alignment
clustering
phylogenetics
2.2 years ago
deolg
• 0
0
Votes
1
Reply
250
Views
Is there any website that shows the cell type for a given marker list?
biomarker
cell
clustering
2.3 years ago
Batu
• 150
1
Vote
4
Replies
478
Views
How to make cluster from gene read count?
RNA-Seq
clustering
R
deseq2
edgeR
2.3 years ago
ahmad mousavi
• 430
• updated 2.3 years ago
Chirag Parsania
♦ 1.4k
3
Votes
12
Replies
1.0k
Views
RNA-seq replicates not clustering
RNA-Seq
clustering
2.4 years ago
sckinta
• 510
• updated 2.3 years ago
Biostar
20
2
Votes
3
Replies
524
Views
Group/Cluster tumor samples in an RNA-Seq dataset for survival analysis, based on the expression of a small gene signature
RNA-Seq
gene signature
survival
clustering
R
2.3 years ago
svlachavas
• 560
• updated 2.3 years ago
Kevin Blighe
43k
0
Votes
3
Replies
595
Views
Triangle heatmap with heatmap.2
heatmap.2
Triangle
Clustering
2.3 years ago
Poorya Parvizi
• 40
0
Votes
0
Replies
507
Views
degPatterns: Error in lower.to.upper.tri.inds(n) : 'n' must be >= 2
RNA-seq
clustering
2.4 years ago
salamandra
• 200
26
Votes
6
Replies
13k
Views
Self-Learning Gene-Expression K-Means Clustering In R
r
clustering
code
10.6 years ago
Eric Normandeau
10k
• updated 2.4 years ago
RamRS
21k
13
Votes
6
Replies
3.2k
Views
Selecting Nodes Of High Correlation In A Tree
microarray
gene
clustering
10.7 years ago
toni
♦ 2.1k
• updated 2.4 years ago
RamRS
21k
4
Votes
8
Replies
462
Views
Tool that can split genes into groups with similar expression pattern overtime and plot them?
RNA-Seq
clustering
2.4 years ago
salamandra
• 200
• updated 2.4 years ago
exin
• 50
0
Votes
1
Reply
715
Views
Should I include multi-mapped reads for analysis that does not require significant differential expression of genes?
RNA-Seq
clustering
heatmap
HTseq
multi-mapped
2.6 years ago
k.woolf
• 0
• updated 2.5 years ago
Vincent Laufer
♦ 1.0k
1
Vote
3
Replies
403
Views
Hierarchical clustering evaluation
clustering
gene expression
2.5 years ago
teabonng
• 20
• updated 2.5 years ago
Jean-Karim Heriche
19k
2
Votes
1
Reply
506
Views
dynamic tree cut
clustering
dynamictreecut
2.5 years ago
teabonng
• 20
• updated 2.5 years ago
Jean-Karim Heriche
19k
4
Votes
6
Replies
506
Views
plotting the expression profiles of different conditions in same plot
Single cell
heatmap
R
Clustering
2.6 years ago
Za
• 120
• updated 2.5 years ago
Biostar
20
4
Votes
6
Replies
474
Views
Visualizing model-based clustering with fviz_mclust
factoextra
clustering
2.6 years ago
lessismore
• 630
• updated 2.6 years ago
Kevin Blighe
43k
0
Votes
4
Replies
450
Views
Cluster RNA sequences from fasta alignment by identity threshold
sequences identity
RNA
clustering
RNA alignment
2.7 years ago
filip7grudzien
• 0
• updated 2.6 years ago
Biostar
20
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