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Showing : cds • reset
2
Votes
2
Replies
138
Views
Bulk Download all CDS and UTRs of known genes from ENSEMBL
UTR CDS ensembl
16 months ago
Aishwarya Kulkarni • 60 • updated 16 months ago
ATpoint 17k
2
Votes
3
Replies
146
Views
Amino acid sequence from CDS information of gff file
Amino acid CDS gff
16 months ago
doubleA • 0
4
Votes
8
Replies
219
Views
Getting proteins from genomic interval of a genbank file
genbank proteins cds biopython
16 months ago
fhsantanna • 440 • updated 16 months ago
Joe 12k
2
Votes
6
Replies
2.6k
Views
Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
Entrez Direct E-utilities efetch CDS retrieve
4.0 years ago
al-ash • 100 • updated 18 months ago
Biostar 20
10
Votes
7
Replies
320
Views
Why are the sum of all exons so much longer than CDS?
exons cds
19 months ago
Jeremy Leipzig 18k • updated 19 months ago
swbarnes2 5.7k
5
Votes
4
Replies
491
Views
'CDS' but not 'exon' in GFF
RNA-Seq GFF exon cds
21 months ago
NielQC • 10 • updated 21 months ago
tdmurphy • 160
1
Vote
2
Replies
287
Views
How to find CDS in Gene Profile?
cDNA CDS Genbank
21 months ago
sagar • 0 • updated 21 months ago
genomax 68k
91
Votes
17
Replies
128k
Views
What'S The Difference Between Cds And Orf?
cds orf
8.3 years ago
shiy05 • 280 • updated 22 months ago
jazzyl5660 • 0
1
Vote
1
Reply
1.4k
Views
determining length of fasta cds and protein sequences
software cds fasta protein
5.6 years ago
vigneshprbh37 • 20 • updated 22 months ago
Biostar 20
0
Votes
1
Reply
256
Views
Get CDS from consensus genome assembly
CDS proteins consensus_sequence
2.0 years ago
yoce_pf • 40
2
Votes
9
Replies
428
Views
Merging position of all different CDS of a single gene in one line
CDS GFF gene duplication
2.0 years ago
1234anjalianjali1234 • 30 • updated 2.0 years ago
rjactonspsfcf • 90
6
Votes
8
Replies
629
Views
Calculate CDS phase in gff3 format
gff phase CDS genome feature format
2.1 years ago
marongiu.luigi • 380 • updated 2.1 years ago
Carambakaracho ♦ 1.2k
0
Votes
1
Reply
624
Views
One to one ortholog detection by RBH blast (Reciprocal best hit)
genome RBH blast ortholog CDS
2.1 years ago
madapada • 0
6
Votes
6
Replies
602
Views
CDS sequence from mRNA and protein sequence
FASTA CDS protein mrna code
2.2 years ago
Macspider ♦ 2.8k • updated 2.2 years ago
lieven.sterck 5.1k
2
Votes
5
Replies
771
Views
How to recompute coding sequences from a psl format ?
genome alignment sequence GMAP CDS
3.0 years ago
Thomas B. • 10 • updated 2.3 years ago
Biostar 20
2
Votes
2
Replies
523
Views
CDS prediction for newly assembled transcripts
RNA-Seq transcriptome Assembly CDS
2.3 years ago
I0110 • 120
2
Votes
5
Replies
724
Views
getting feature annotations for all NCBI Refseq sequences
ncbi refseq annotation CDS
2.4 years ago
bitpir • 130 • updated 2.4 years ago
genomax 68k
0
Votes
0
Replies
411
Views
best CDS prediction tool for online annotation submission
annotation fasta cds prodigal ghostkoala
2.5 years ago
willnotburn • 40
0
Votes
1
Reply
625
Views
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
RNA-Seq CDS exon
2.9 years ago
zoukai3412085 • 0
0
Votes
0
Replies
516
Views
get CDS cordinates for genes, excluding UTR
CDS gene
2.9 years ago
J.F.Jiang • 750
0
Votes
3
Replies
1.1k
Views
Program that will extract all CDS from protein-coding genes in a genome fasta file (with gff file)
genome gene CDS
3.0 years ago
molly77 • 10 • updated 3.0 years ago
Kevin Blighe 43k
3
Votes
8
Replies
938
Views
CDS FASTA file as Reference sequence for Ion Torrent
next-gen FASTA REFERENCE .bed CDS
3.0 years ago
serenabivona • 10
1
Vote
2
Replies
867
Views
how to construct CDS by using annotation file (coordinates) properly ???
CDS 0-based 1-based coorinates BAM file
3.0 years ago
adeena_hassan • 40
4
Votes
4
Replies
859
Views
Ensembl API, command-line argument
ensembl API bash python CDS
3.0 years ago
oars • 150 • updated 3.0 years ago
Alex Reynolds 28k
0
Votes
2
Replies
2.0k
Views
How To Add Partial Cds Seqfeature In Biopython?
biopython cds python
7.3 years ago
Leszek 4.0k • updated 3.0 years ago
Biostar 20
7
Votes
15
Replies
879
Views
Locating longest gene, CDS in Ensembl GTF
Ensembl GTF longest gene CDS
3.1 years ago
oars • 150
1
Vote
3
Replies
1.1k
Views
get gene annotation for nucleotide sequence of the NCBI RefSeq database
gene ncbi annotation cds DNA
3.2 years ago
dabid • 0
2
Votes
4
Replies
869
Views
GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon
3.3 years ago
Marvin • 140 • updated 3.3 years ago
Devon Ryan 90k
1
Vote
3
Replies
2.9k
Views
Retrieving CDS sequences NCBI
ncbi cds fasta batch entrez
5.4 years ago
vigneshprbh37 • 20 • updated 3.3 years ago
Biostar 20
2
Votes
9
Replies
795
Views
DNA sequences trimming methods
dna trimming sequence cds
3.3 years ago
l.souza • 70
0
Votes
1
Reply
656
Views
Extract CDS from an extracted gene without bioperl
CDS Tool
3.3 years ago
adeena_hassan • 40 • updated 3.3 years ago
Ben • 50
0
Votes
0
Replies
739
Views
How to map exon data to CDS from one reference species?
exon cds exome protein mapping
3.5 years ago
DNAngel • 30 • updated 3.4 years ago
Biostar 20
7
Votes
9
Replies
1.1k
Views
Convert fasta to bed (no gtf available)
genome ensembl bed fasta CDS
3.4 years ago
bioinfo8 • 120
7
Votes
8
Replies
1.1k
Views
Convert cds .fa to bed
ensembl bed fasta cds ucsc
3.4 years ago
bioinfo8 • 120
2
Votes
4
Replies
628
Views
genome features and sequence parsing
genome sequence cds parsing
3.4 years ago
lessismore • 630 • updated 3.4 years ago
Macspider ♦ 2.8k
2
Votes
7
Replies
946
Views
How to identify the contigs for each predicted cds sequences?
genome augustus output cds contigs
3.4 years ago
mirza • 80 • updated 3.4 years ago
Joe 12k
3
Votes
5
Replies
3.8k
Views
How To Get The Coding Sequences (Cds) Based On The Protein Aminoacid Sequence
cds
7.3 years ago
harrymao20 • 0 • updated 3.6 years ago
seancho • 40
1
Vote
3
Replies
897
Views
One sequence with multiple CDS start and end annotation with BioMart Browser
Ensembl Biomart CDS CDNA
3.8 years ago
david.a.mancilla • 0 • updated 3.7 years ago
WouterDeCoster 39k
2
Votes
4
Replies
945
Views
Retrieval of chromosomal coordinates of coding sequences (CDS)
genome gene CDS
3.8 years ago
shakeelbiochemist • 0
3
Votes
5
Replies
693
Views
Find gene on genome from cds
CDS genome
3.9 years ago
guillaume.rbt • 590
4
Votes
8
Replies
1.1k
Views
Does having ORF shows the coding potential of a transcript that showed no hit against NCBI nr ?
blast gene ORF CDS alignment
3.9 years ago
Farbod ♦ 3.3k
36
Votes
15
Replies
29k
Views
Extract Cds Fastas From A Gff Annotation + Reference Sequence
gff CDS
8.3 years ago
Federico Giorgi • 490 • updated 4.0 years ago
sutturka • 150
2
Votes
2
Replies
2.0k
Views
plotting exons, cds and transcript for a specific gene
plot gene exon cds transcripts
5.4 years ago
m_punisher6 • 0 • updated 4.0 years ago
hgarza • 0
2
Votes
1
Reply
979
Views
choice of reference for transcriptome assembly
RNA-Seq Assembly cDNA CDS
4.1 years ago
SJ Basu • 30 • updated 4.0 years ago
Biostar 20
0
Votes
1
Reply
923
Views
Annotated files that contain the sequence of genes and CDSs?
sequences ncbi cds gene
4.1 years ago
unksci • 150 • updated 4.1 years ago
igor 7.7k
10
Votes
6
Replies
1.6k
Views
should stop codon be counted as part of CDS
gtf cds stop codon
4.1 years ago
-_- • 830 • updated 4.1 years ago
NAVANEETHAN.R • 0
3
Votes
4
Replies
974
Views
Retrieve all predicted cds from NCBI
ncbi blast cds ensembl
4.2 years ago
tlorin • 250
2
Votes
2
Replies
676
Views
CDS of Adenovirus Genes
CDS Vrial Gene EBI codon usage adenovirus
4.2 years ago
BioCOOL • 0 • updated 4.2 years ago
genomax 68k
0
Votes
2
Replies
1.1k
Views
Is there a tool for counting the number of non-synonymous sites in a CDS
dnds cds ensembl biomart
4.2 years ago
Max • 130 • updated 4.2 years ago
natasha.sernova ♦ 3.5k
2
Votes
1
Reply
1.2k
Views
OMA parameter error Message
oma parameter.drw Cds multiple species
4.4 years ago
chevivien • 70 • updated 4.4 years ago
adrian.altenhoff • 620
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