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Showing : cds • reset
2
Votes
2
Replies
125
Views
Bulk Download all CDS and UTRs of known genes from ENSEMBL
UTR CDS ensembl
12 months ago
Aishwarya Kulkarni • 60 • updated 12 months ago
ATpoint 17k
2
Votes
3
Replies
129
Views
Amino acid sequence from CDS information of gff file
Amino acid CDS gff
12 months ago
doubleA • 0
4
Votes
8
Replies
202
Views
Getting proteins from genomic interval of a genbank file
genbank proteins cds biopython
13 months ago
fhsantanna • 440 • updated 13 months ago
Joe 12k
2
Votes
6
Replies
2.5k
Views
Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
Entrez Direct E-utilities efetch CDS retrieve
3.7 years ago
al-ash • 100 • updated 14 months ago
Biostar 20
10
Votes
7
Replies
306
Views
Why are the sum of all exons so much longer than CDS?
exons cds
15 months ago
Jeremy Leipzig 18k • updated 15 months ago
swbarnes2 5.7k
5
Votes
4
Replies
481
Views
'CDS' but not 'exon' in GFF
RNA-Seq GFF exon cds
17 months ago
NielQC • 10 • updated 17 months ago
tdmurphy • 160
1
Vote
2
Replies
273
Views
How to find CDS in Gene Profile?
cDNA CDS Genbank
18 months ago
sagar • 0 • updated 18 months ago
genomax 68k
91
Votes
17
Replies
128k
Views
What'S The Difference Between Cds And Orf?
cds orf
8.0 years ago
shiy05 • 280 • updated 18 months ago
jazzyl5660 • 0
1
Vote
1
Reply
1.4k
Views
determining length of fasta cds and protein sequences
software cds fasta protein
5.3 years ago
vigneshprbh37 • 20 • updated 18 months ago
Biostar 20
0
Votes
1
Reply
247
Views
Get CDS from consensus genome assembly
CDS proteins consensus_sequence
20 months ago
yoce_pf • 40
2
Votes
9
Replies
419
Views
Merging position of all different CDS of a single gene in one line
CDS GFF gene duplication
21 months ago
1234anjalianjali1234 • 30 • updated 21 months ago
rjactonspsfcf • 90
6
Votes
8
Replies
622
Views
Calculate CDS phase in gff3 format
gff phase CDS genome feature format
21 months ago
marongiu.luigi • 380 • updated 21 months ago
Carambakaracho ♦ 1.2k
0
Votes
1
Reply
615
Views
One to one ortholog detection by RBH blast (Reciprocal best hit)
genome RBH blast ortholog CDS
22 months ago
madapada • 0
6
Votes
6
Replies
595
Views
CDS sequence from mRNA and protein sequence
FASTA CDS protein mrna code
23 months ago
Macspider ♦ 2.8k • updated 23 months ago
lieven.sterck 5.1k
2
Votes
5
Replies
754
Views
How to recompute coding sequences from a psl format ?
genome alignment sequence GMAP CDS
2.6 years ago
Thomas B. • 10 • updated 2.0 years ago
Biostar 20
2
Votes
2
Replies
516
Views
CDS prediction for newly assembled transcripts
RNA-Seq transcriptome Assembly CDS
2.0 years ago
I0110 • 120
2
Votes
5
Replies
714
Views
getting feature annotations for all NCBI Refseq sequences
ncbi refseq annotation CDS
2.1 years ago
bitpir • 130 • updated 2.1 years ago
genomax 68k
0
Votes
0
Replies
404
Views
best CDS prediction tool for online annotation submission
annotation fasta cds prodigal ghostkoala
2.1 years ago
willnotburn • 40
0
Votes
1
Reply
619
Views
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
RNA-Seq CDS exon
2.5 years ago
zoukai3412085 • 0
0
Votes
0
Replies
509
Views
get CDS cordinates for genes, excluding UTR
CDS gene
2.5 years ago
J.F.Jiang • 750
0
Votes
3
Replies
1.1k
Views
Program that will extract all CDS from protein-coding genes in a genome fasta file (with gff file)
genome gene CDS
2.7 years ago
molly77 • 10 • updated 2.7 years ago
Kevin Blighe 43k
3
Votes
8
Replies
932
Views
CDS FASTA file as Reference sequence for Ion Torrent
next-gen FASTA REFERENCE .bed CDS
2.7 years ago
serenabivona • 10
1
Vote
2
Replies
857
Views
how to construct CDS by using annotation file (coordinates) properly ???
CDS 0-based 1-based coorinates BAM file
2.7 years ago
adeena_hassan • 40
4
Votes
4
Replies
854
Views
Ensembl API, command-line argument
ensembl API bash python CDS
2.7 years ago
oars • 150 • updated 2.7 years ago
Alex Reynolds 28k
0
Votes
2
Replies
2.0k
Views
How To Add Partial Cds Seqfeature In Biopython?
biopython cds python
7.0 years ago
Leszek 4.0k • updated 2.7 years ago
Biostar 20
7
Votes
15
Replies
871
Views
Locating longest gene, CDS in Ensembl GTF
Ensembl GTF longest gene CDS
2.8 years ago
oars • 150
1
Vote
3
Replies
1.0k
Views
get gene annotation for nucleotide sequence of the NCBI RefSeq database
gene ncbi annotation cds DNA
2.9 years ago
dabid • 0
2
Votes
4
Replies
862
Views
GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon
3.0 years ago
Marvin • 140 • updated 3.0 years ago
Devon Ryan 90k
1
Vote
3
Replies
2.9k
Views
Retrieving CDS sequences NCBI
ncbi cds fasta batch entrez
5.0 years ago
vigneshprbh37 • 20 • updated 3.0 years ago
Biostar 20
2
Votes
9
Replies
789
Views
DNA sequences trimming methods
dna trimming sequence cds
3.0 years ago
l.souza • 70
0
Votes
1
Reply
647
Views
Extract CDS from an extracted gene without bioperl
CDS Tool
3.0 years ago
adeena_hassan • 40 • updated 3.0 years ago
Ben • 50
0
Votes
0
Replies
733
Views
How to map exon data to CDS from one reference species?
exon cds exome protein mapping
3.1 years ago
DNAngel • 30 • updated 3.0 years ago
Biostar 20
7
Votes
9
Replies
1.1k
Views
Convert fasta to bed (no gtf available)
genome ensembl bed fasta CDS
3.1 years ago
bioinfo8 • 120
7
Votes
8
Replies
1.1k
Views
Convert cds .fa to bed
ensembl bed fasta cds ucsc
3.1 years ago
bioinfo8 • 120
2
Votes
4
Replies
620
Views
genome features and sequence parsing
genome sequence cds parsing
3.1 years ago
lessismore • 630 • updated 3.1 years ago
Macspider ♦ 2.8k
2
Votes
7
Replies
939
Views
How to identify the contigs for each predicted cds sequences?
genome augustus output cds contigs
3.1 years ago
mirza • 80 • updated 3.1 years ago
Joe 12k
3
Votes
5
Replies
3.8k
Views
How To Get The Coding Sequences (Cds) Based On The Protein Aminoacid Sequence
cds
7.0 years ago
harrymao20 • 0 • updated 3.3 years ago
seancho • 40
1
Vote
3
Replies
891
Views
One sequence with multiple CDS start and end annotation with BioMart Browser
Ensembl Biomart CDS CDNA
3.4 years ago
david.a.mancilla • 0 • updated 3.4 years ago
WouterDeCoster 39k
2
Votes
4
Replies
938
Views
Retrieval of chromosomal coordinates of coding sequences (CDS)
genome gene CDS
3.5 years ago
shakeelbiochemist • 0
3
Votes
5
Replies
687
Views
Find gene on genome from cds
CDS genome
3.6 years ago
guillaume.rbt • 590
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