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104 results • Page
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Showing :
cds
•
reset
2
Votes
2
Replies
142
Views
Bulk Download all CDS and UTRs of known genes from ENSEMBL
UTR
CDS
ensembl
21 months ago
Aishwarya Kulkarni
• 60
• updated 21 months ago
ATpoint
17k
2
Votes
3
Replies
150
Views
Amino acid sequence from CDS information of gff file
Amino acid
CDS
gff
21 months ago
doubleA
• 0
4
Votes
8
Replies
223
Views
Getting proteins from genomic interval of a genbank file
genbank
proteins
cds
biopython
22 months ago
fhsantanna
• 440
• updated 22 months ago
Joe
12k
2
Votes
6
Replies
2.6k
Views
Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
Entrez Direct E-utilities
efetch
CDS
retrieve
4.5 years ago
al-ash
• 100
• updated 23 months ago
Biostar
20
10
Votes
7
Replies
324
Views
Why are the sum of all exons so much longer than CDS?
exons
cds
24 months ago
Jeremy Leipzig
18k
• updated 24 months ago
swbarnes2
5.7k
5
Votes
4
Replies
492
Views
'CDS' but not 'exon' in GFF
RNA-Seq
GFF
exon
cds
2.2 years ago
NielQC
• 10
• updated 2.2 years ago
tdmurphy
• 160
1
Vote
2
Replies
289
Views
How to find CDS in Gene Profile?
cDNA
CDS
Genbank
2.2 years ago
sagar
• 0
• updated 2.2 years ago
genomax
68k
91
Votes
17
Replies
128k
Views
10 follow
What'S The Difference Between Cds And Orf?
cds
orf
8.7 years ago
shiy05
• 280
• updated 2.3 years ago
jazzyl5660
• 0
1
Vote
1
Reply
1.4k
Views
determining length of fasta cds and protein sequences
software
cds
fasta
protein
6.1 years ago
vigneshprbh37
• 20
• updated 2.3 years ago
Biostar
20
0
Votes
1
Reply
257
Views
Get CDS from consensus genome assembly
CDS
proteins
consensus_sequence
2.4 years ago
yoce_pf
• 40
2
Votes
9
Replies
430
Views
Merging position of all different CDS of a single gene in one line
CDS
GFF
gene duplication
2.5 years ago
1234anjalianjali1234
• 30
• updated 2.5 years ago
rjactonspsfcf
• 90
6
Votes
8
Replies
629
Views
Calculate CDS phase in gff3 format
gff
phase
CDS
genome feature format
2.5 years ago
marongiu.luigi
• 380
• updated 2.5 years ago
Carambakaracho
♦ 1.2k
0
Votes
1
Reply
629
Views
One to one ortholog detection by RBH blast (Reciprocal best hit)
genome
RBH
blast
ortholog
CDS
2.6 years ago
madapada
• 0
6
Votes
6
Replies
605
Views
CDS sequence from mRNA and protein sequence
FASTA
CDS
protein
mrna
code
2.7 years ago
Macspider
♦ 2.8k
• updated 2.7 years ago
lieven.sterck
5.1k
2
Votes
5
Replies
777
Views
How to recompute coding sequences from a psl format ?
genome
alignment
sequence
GMAP
CDS
3.4 years ago
Thomas B.
• 10
• updated 2.8 years ago
Biostar
20
2
Votes
2
Replies
526
Views
CDS prediction for newly assembled transcripts
RNA-Seq
transcriptome
Assembly
CDS
2.8 years ago
I0110
• 120
2
Votes
5
Replies
728
Views
getting feature annotations for all NCBI Refseq sequences
ncbi
refseq
annotation
CDS
2.8 years ago
bitpir
• 130
• updated 2.8 years ago
genomax
68k
0
Votes
0
Replies
411
Views
best CDS prediction tool for online annotation submission
annotation
fasta
cds
prodigal
ghostkoala
2.9 years ago
willnotburn
• 40
0
Votes
1
Reply
626
Views
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
RNA-Seq
CDS
exon
3.3 years ago
zoukai3412085
• 0
0
Votes
0
Replies
518
Views
get CDS cordinates for genes, excluding UTR
CDS
gene
3.3 years ago
J.F.Jiang
• 750
0
Votes
3
Replies
1.1k
Views
Program that will extract all CDS from protein-coding genes in a genome fasta file (with gff file)
genome
gene
CDS
3.4 years ago
molly77
• 10
• updated 3.4 years ago
Kevin Blighe
43k
3
Votes
8
Replies
938
Views
CDS FASTA file as Reference sequence for Ion Torrent
next-gen
FASTA
REFERENCE
.bed
CDS
3.4 years ago
serenabivona
• 10
1
Vote
2
Replies
867
Views
how to construct CDS by using annotation file (coordinates) properly ???
CDS
0-based
1-based coorinates
BAM file
3.4 years ago
adeena_hassan
• 40
4
Votes
4
Replies
862
Views
Ensembl API, command-line argument
ensembl API
bash
python
CDS
3.4 years ago
oars
• 150
• updated 3.4 years ago
Alex Reynolds
28k
0
Votes
2
Replies
2.0k
Views
How To Add Partial Cds Seqfeature In Biopython?
biopython
cds
python
7.7 years ago
Leszek
4.0k
• updated 3.5 years ago
Biostar
20
7
Votes
15
Replies
883
Views
Locating longest gene, CDS in Ensembl GTF
Ensembl
GTF
longest gene
CDS
3.5 years ago
oars
• 150
1
Vote
3
Replies
1.1k
Views
get gene annotation for nucleotide sequence of the NCBI RefSeq database
gene
ncbi
annotation
cds
DNA
3.6 years ago
dabid
• 0
2
Votes
4
Replies
871
Views
GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf
cds
exon
3.7 years ago
Marvin
• 140
• updated 3.7 years ago
Devon Ryan
90k
1
Vote
3
Replies
2.9k
Views
Retrieving CDS sequences NCBI
ncbi
cds
fasta
batch entrez
5.8 years ago
vigneshprbh37
• 20
• updated 3.7 years ago
Biostar
20
2
Votes
9
Replies
797
Views
DNA sequences trimming methods
dna
trimming
sequence
cds
3.7 years ago
l.souza
• 70
0
Votes
1
Reply
656
Views
Extract CDS from an extracted gene without bioperl
CDS
Tool
3.8 years ago
adeena_hassan
• 40
• updated 3.8 years ago
Ben
• 50
0
Votes
0
Replies
739
Views
How to map exon data to CDS from one reference species?
exon
cds
exome
protein
mapping
3.9 years ago
DNAngel
• 30
• updated 3.8 years ago
Biostar
20
7
Votes
9
Replies
1.1k
Views
Convert fasta to bed (no gtf available)
genome
ensembl
bed
fasta
CDS
3.8 years ago
bioinfo8
• 120
7
Votes
8
Replies
1.1k
Views
Convert cds .fa to bed
ensembl
bed
fasta
cds
ucsc
3.8 years ago
bioinfo8
• 120
2
Votes
4
Replies
628
Views
genome features and sequence parsing
genome
sequence
cds
parsing
3.9 years ago
lessismore
• 630
• updated 3.9 years ago
Macspider
♦ 2.8k
2
Votes
7
Replies
947
Views
How to identify the contigs for each predicted cds sequences?
genome
augustus output
cds
contigs
3.9 years ago
mirza
• 80
• updated 3.9 years ago
Joe
12k
3
Votes
5
Replies
3.9k
Views
How To Get The Coding Sequences (Cds) Based On The Protein Aminoacid Sequence
cds
7.7 years ago
harrymao20
• 0
• updated 4.0 years ago
seancho
• 40
1
Vote
3
Replies
900
Views
One sequence with multiple CDS start and end annotation with BioMart Browser
Ensembl
Biomart
CDS
CDNA
4.2 years ago
david.a.mancilla
• 0
• updated 4.2 years ago
WouterDeCoster
39k
2
Votes
4
Replies
946
Views
Retrieval of chromosomal coordinates of coding sequences (CDS)
genome
gene
CDS
4.2 years ago
shakeelbiochemist
• 0
3
Votes
5
Replies
694
Views
Find gene on genome from cds
CDS
genome
4.3 years ago
guillaume.rbt
• 590
4
Votes
8
Replies
1.1k
Views
Does having ORF shows the coding potential of a transcript that showed no hit against NCBI nr ?
blast
gene
ORF
CDS
alignment
4.3 years ago
Farbod
♦ 3.3k
36
Votes
15
Replies
29k
Views
11 follow
Extract Cds Fastas From A Gff Annotation + Reference Sequence
gff
CDS
8.7 years ago
Federico Giorgi
• 490
• updated 4.4 years ago
sutturka
• 150
2
Votes
2
Replies
2.0k
Views
plotting exons, cds and transcript for a specific gene
plot
gene
exon
cds
transcripts
5.8 years ago
m_punisher6
• 0
• updated 4.4 years ago
hgarza
• 0
2
Votes
1
Reply
980
Views
choice of reference for transcriptome assembly
RNA-Seq
Assembly
cDNA
CDS
4.5 years ago
SJ Basu
• 30
• updated 4.4 years ago
Biostar
20
0
Votes
1
Reply
923
Views
Annotated files that contain the sequence of genes and CDSs?
sequences
ncbi
cds
gene
4.5 years ago
unksci
• 150
• updated 4.5 years ago
igor
7.7k
10
Votes
6
Replies
1.6k
Views
should stop codon be counted as part of CDS
gtf
cds
stop codon
4.6 years ago
-_-
• 830
• updated 4.6 years ago
NAVANEETHAN.R
• 0
3
Votes
4
Replies
974
Views
Retrieve all predicted cds from NCBI
ncbi
blast
cds
ensembl
4.6 years ago
tlorin
• 250
2
Votes
2
Replies
677
Views
CDS of Adenovirus Genes
CDS
Vrial Gene
EBI
codon usage
adenovirus
4.6 years ago
BioCOOL
• 0
• updated 4.6 years ago
genomax
68k
0
Votes
2
Replies
1.1k
Views
Is there a tool for counting the number of non-synonymous sites in a CDS
dnds
cds
ensembl
biomart
4.7 years ago
Max
• 130
• updated 4.7 years ago
natasha.sernova
♦ 3.5k
2
Votes
1
Reply
1.2k
Views
OMA parameter error Message
oma
parameter.drw
Cds
multiple species
4.8 years ago
chevivien
• 70
• updated 4.8 years ago
adrian.altenhoff
• 620
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