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Showing : bedGraph • reset
0
Votes
8
Replies
2.9k
Views
Overlapping regions in a BedGraph file
0 Votes | 8 Replies
bedgraph GRO-Seq ChIP-Seq deeptools
4.2 years ago
Sam • 70 • updated 10 months ago
Simply Bioinformatics • 150
1
Vote
4
Replies
196
Views
Obtain ChIPseq peaks from a bedgraph file with continuous regions
1 Vote | 4 Replies
ChIP-Seq peaks calling HOMER MACS2 bedGraph
10 months ago
mmaqueda • 0 • updated 10 months ago
ATpoint 17k
5
Votes
4
Replies
1.6k
Views
Generating a bedgraph from a scored bed file
5 Votes | 4 Replies
ChIP-Seq genome bedtools bedgraph coverage
5.0 years ago
Matt Corley • 40 • updated 12 months ago
Biostar 20
0
Votes
3
Replies
367
Views
Seqmonk: Bedgraph as input ? (EPIC methylation array data)
0 Votes | 3 Replies
seqmonk Bedgraph methylation probe design
15 months ago
Ankit • 100 • updated 13 months ago
Charles Warden 6.8k
2
Votes
3
Replies
229
Views
Transform Bedgraph counts into Gene Counts (DESeq2 input)
2 Votes | 3 Replies
Bedgraph Counts Gene Counts
13 months ago
LuisNagano • 10 • updated 13 months ago
gocougs • 20
4
Votes
6
Replies
350
Views
Visualizing CNV data based from bed or bedgraph format
4 Votes | 6 Replies
CNV IGV R bed bedgraph
14 months ago
sm.hashemin • 60
1
Vote
3
Replies
259
Views
bedgraph file format in IGV: good for observing CNV ?
1 Vote | 3 Replies
igv cnv bedgraph
16 months ago
Pin.Bioinf • 240
1
Vote
2
Replies
374
Views
Reformating bedGraph files in shell script
1 Vote | 2 Replies
bedGraph bigWig ucsc chr awk
18 months ago
m93 • 150 • updated 17 months ago
Biostar 20
7
Votes
10
Replies
1.7k
Views
BigWig library for Java
7 Votes | 10 Replies
Java BigWig BedGraph
5.4 years ago
bow • 790 • updated 17 months ago
holgerbrandl • 30
3
Votes
2
Replies
335
Views
variableStep vs fixedStep for range formats
3 Votes | 2 Replies
ucsc formats bigwig bedgraph range
18 months ago
m93 • 150 • updated 18 months ago
RamRS 21k
5
Votes
8
Replies
566
Views
Output bedGraph from genomeCoverageBed is missing "chr"
5 Votes | 8 Replies
RNA-Seq ucsc genomeCoverageBed bedGraph bigWig
19 months ago
m93 • 150 • updated 19 months ago
RamRS 21k
7
Votes
8
Replies
590
Views
Stranded RNA-seq data visualization in UCSC
7 Votes | 8 Replies
RNA-Seq stranded visualization bedgraph
19 months ago
marina.v.yurieva • 480 • updated 19 months ago
Rob 3.3k
0
Votes
1
Reply
919
Views
"olambda_treat_afterfiting_all" output file from MACS
0 Votes | 1 Reply
MACS bedgraph output
5.3 years ago
akivab2 • 100 • updated 19 months ago
Biostar 20
0
Votes
1
Reply
213
Views
What should you do if you don't know the wig file is based on GRCH37 or GRCH38?
0 Votes | 1 Reply
wig bedgraph
20 months ago
Shicheng Guo ♦ 7.5k
1
Vote
8
Replies
494
Views
bedGraph compress tools
1 Vote | 8 Replies
bedtools bedGraph
20 months ago
marina.v.yurieva • 480
1
Vote
4
Replies
704
Views
How to extrach gene names and peaks from BedGraph or BigWig files
1 Vote | 4 Replies
ChIP-Seq bedgraph bigwig peak
23 months ago
hkarakurt • 50 • updated 23 months ago
Devon Ryan 90k
5
Votes
8
Replies
1.6k
Views
plot a bedgraph
5 Votes | 8 Replies
bed bedgraph plot RNA-Seq
2.0 years ago
sacha ♦ 1.7k
0
Votes
0
Replies
475
Views
genome-wide gene occupancy profiles
0 Votes | 0 Replies
ChIP-Seq occupany profile bedgraph
2.6 years ago
Assa Yeroslaviz ♦ 1.2k
5
Votes
6
Replies
931
Views
How to merge bedGraph records which are next to each other and have the same score?
5 Votes | 6 Replies
bedGraph
2.6 years ago
James Ashmore ♦ 2.6k • updated 2.6 years ago
geek_y 9.7k
2
Votes
2
Replies
817
Views
Effectively search for positions in large bedgraph files using python (or other language if needed)
2 Votes | 2 Replies
bedgraph python
2.7 years ago
DVA • 520 • updated 2.7 years ago
Alex Reynolds 28k
4
Votes
3
Replies
1.2k
Views
Visualising BedGraph files on UCSC [custom tracks]
4 Votes | 3 Replies
visualisation bedgraph ucsc genome
2.8 years ago
anu014 • 160 • updated 2.8 years ago
arup ♦ 1.3k
2
Votes
3
Replies
2.8k
Views
Difference between 'bedgraph' and 'bw' files
2 Votes | 3 Replies
bedgraph bw
3.1 years ago
biotech • 540 • updated 3.1 years ago
igor 7.7k
0
Votes
1
Reply
1.8k
Views
How to create a bedGraph file for broadPeak peak caller?
0 Votes | 1 Reply
broadPeak bedGraph ChIP-Seq peak calling
4.2 years ago
mrs.hope • 10 • updated 3.3 years ago
569497735 • 0
0
Votes
3
Replies
1.1k
Views
Merge hundreds bedgraph files with unionbedg in one bash line
0 Votes | 3 Replies
bedgraph merge xargs bash
3.4 years ago
Shicheng Guo ♦ 7.5k
0
Votes
4
Replies
1.6k
Views
Relationship of bedGraph to wig.
0 Votes | 4 Replies
ChIP-Seq bedGraph wig wiggle
3.6 years ago
ariel.balter • 140 • updated 3.6 years ago
Devon Ryan 90k
1
Vote
2
Replies
962
Views
Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
1 Vote | 2 Replies
sequencing coordinates genome bed bedgraph
4.0 years ago
biohack92 • 150 • updated 4.0 years ago
Alex Reynolds 28k
3
Votes
3
Replies
1.1k
Views
How do I replace a value used in script with a range of values in a file?
3 Votes | 3 Replies
Bioinformatics AWK bedgraph
4.0 years ago
josephmccarter1 • 70 • updated 4.0 years ago
tomc • 80
0
Votes
1
Reply
978
Views
Two UCSC bedgraph tracks next to each other
0 Votes | 1 Reply
UCSC Custom Track bedgraph
4.6 years ago
kevin.wyatt.mcmahon • 0 • updated 4.0 years ago
Chirag Nepal ♦ 2.2k
1
Vote
4
Replies
913
Views
Is there a simple way to get the max coverage of a bedgraph file in python?
1 Vote | 4 Replies
python bedgraph
4.0 years ago
rioualen • 360 • updated 4.0 years ago
Alex Reynolds 28k
13
Votes
19
Replies
2.2k
Views
Sum column until a certain value is reached then print that line
13 Votes | 19 Replies
awk bioinformatics bedgraph
4.1 years ago
josephmccarter1 • 70 • updated 4.1 years ago
John 12k
8
Votes
7
Replies
7.1k
Views
Bed to BedGraph
8 Votes | 7 Replies
RNA-Seq bioinformatics bed bedgraph DaPars
4.1 years ago
abc • 30 • updated 4.1 years ago
dally • 180
6
Votes
10
Replies
2.0k
Views
UCSC BedGraph Issue
6 Votes | 10 Replies
bedgraph ucsc kent methylation
4.8 years ago
mbio.kyle • 330 • updated 4.8 years ago
Maximilian Haeussler ♦ 1.3k
0
Votes
0
Replies
1.5k
Views
GEM mappability > wig/bedgraph : how to interprete
0 Votes | 0 Replies
gem mappbility interpretation bedgraph wiggle
5.0 years ago
mehran.karimzade • 160
0
Votes
0
Replies
990
Views
tools to get coverage of a particular transcript from bedgraph
0 Votes | 0 Replies
bedgraph tools Tool
5.2 years ago
manauwer_raza • 0
8
Votes
3
Replies
2.2k
Views
viewing BED Graph files on the IGB
8 Votes | 3 Replies
IGB arabidopsis bedgraph
5.3 years ago
akivab2 • 100 • updated 5.3 years ago
Ann ♦ 2.2k
2
Votes
2
Replies
1.3k
Views
"mask" values in a bedgraph
2 Votes | 2 Replies
bedgraph bigwig conservation bedtools
5.8 years ago
A. Domingues ♦ 2.1k
8
Votes
5
Replies
11k
Views
how to visualize the bedgraph and bed file
8 Votes | 5 Replies
bed fil bedgraph
5.8 years ago
Raghav • 100 • updated 5.8 years ago
Alex Reynolds 28k
3
Votes
1
Reply
3.6k
Views
Bedgraph to bed file conversion
3 Votes | 1 Reply
bedgraph bed
5.9 years ago
Aishwarya.Kulkarni • 20 • updated 5.9 years ago
Alex Reynolds 28k
38 results • Page 1 of 1
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