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Showing : bbmap • reset
3
Votes
2
Replies
136
Views
Keep only reads where both map using BBTools
bbtools bbmap
16 months ago
dylan.lawrence • 10 • updated 16 months ago
genomax 68k
64
Votes
63
Replies
9.9k
Views
Tool: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
compression bbmap clumpify pigz storage Tool
3.7 years ago
Brian Bushnell 16k • updated 16 months ago
snishtala03 • 10
6
Votes
13
Replies
320
Views
Clumpify Input via Process Substitution
bbmap clumpify
17 months ago
dario.garvan • 450
1
Vote
3
Replies
335
Views
Bulk quality interleaving with bbmap reformat command
bbmap bbduk reformat bash loop
20 months ago
infenit101 • 20 • updated 18 months ago
ross_whetten • 10
7
Votes
8
Replies
442
Views
BBDuk.sh and BBDuk2.sh barcodefilter does not filter the reads
BBMap BBDuk barcode illumina index fastq
18 months ago
chilifan • 70
0
Votes
4
Replies
256
Views
Simultaneous multiple read recruitment with BBMap?
BBMap mapping
18 months ago
Rebecs Garner • 0
1
Vote
7
Replies
876
Views
java.lang.OutOfMemoryError: Java heap space not solve with -Xmx
bbmap repair.sh paired-end OutOfMemoryError Xmx
19 months ago
mb2subi • 0
0
Votes
18
Replies
450
Views
BBMap randomreads.sh exact path to ref error: Could not find or load main class
BBMap Java
19 months ago
Tawny • 130
0
Votes
1
Reply
290
Views
BBMAP fails to find secondary alignment
bbmap secondary
21 months ago
mark.rose • 30 • updated 20 months ago
Biostar 20
1
Vote
6
Replies
324
Views
BBMAP paired end alignment problem
BBMAP bbmap align paired-end
21 months ago
mark.rose • 30 • updated 21 months ago
h.mon 25k
2
Votes
3
Replies
283
Views
Tadpole assembler header
bbmap bbtools tadpole
21 months ago
h.mon 25k
1
Vote
5
Replies
904
Views
bbmap split paired-end reads back into separated fastq files?
genome bbmap next-gen sequencing alignment
22 months ago
c.e.chong • 10 • updated 22 months ago
genomax 68k
5
Votes
6
Replies
381
Views
Have bbduk retain quality scores in output after kmer trimming
trim primer bbmap
22 months ago
caverill • 40
15
Votes
28
Replies
3.3k
Views
Tool: Introducing FilterByTile: Remove Low-Quality Reads Without Adding Bias
quality filtering BBMap filterbytile Illumina Tool
3.6 years ago
Brian Bushnell 16k • updated 23 months ago
AllisonAnne • 0
0
Votes
7
Replies
296
Views
randomreads.sh simulated reads dont map to genome
bbmap
2.1 years ago
grant.hovhannisyan ♦ 1.5k
2
Votes
8
Replies
241
Views
randomreads.sh simulated mates are far away
bbmap
2.1 years ago
grant.hovhannisyan ♦ 1.5k • updated 2.1 years ago
h.mon 25k
5
Votes
3
Replies
629
Views
paired-end reads in BBMap randomreads.sh
randomreads BBMap
2.1 years ago
grant.hovhannisyan ♦ 1.5k • updated 2.1 years ago
genomax 68k
0
Votes
1
Reply
356
Views
BBMAP mapping Algorithm explanation: HELP!
mapping bbmap NGS alignment
2.2 years ago
midox • 220 • updated 2.2 years ago
genomax 68k
0
Votes
4
Replies
603
Views
Poly A trimming from RNA-seq data by bbduk (bbmap package)
polyA trimming RNA-seq bbduk bbmap
2.2 years ago
seta ♦ 1.2k • updated 2.2 years ago
WouterDeCoster 39k
0
Votes
7
Replies
444
Views
calctruequality in bbmap
Assembly BBtools calctruequality q score BBmap
2.2 years ago
coyk • 0
0
Votes
5
Replies
577
Views
SSPACE for scaffolding
sspace scaffolding contigs insert size bbmap
2.2 years ago
deepti1rao • 20 • updated 2.2 years ago
RamRS 21k
1
Vote
5
Replies
660
Views
BBDuk output different sized paired end reads
bbmap bbduk preprocessing
2.3 years ago
GLFrey • 20 • updated 2.3 years ago
h.mon 25k
2
Votes
7
Replies
808
Views
BBMap genome indexing - java issue?
BBMap java indexing
2.3 years ago
CAnna • 20
1
Vote
4
Replies
546
Views
Metagenome Read Simulators
metagenomics simulation WGS BBmap
2.4 years ago
alesssia • 520
2
Votes
2
Replies
956
Views
bbmap callvariants - how to add sample names, how to get 0/0 alleles back?
bbmap callvariants.sh
2.4 years ago
Philipp Bayer 6.1k
0
Votes
8
Replies
729
Views
bbmap paired-end alignment problem
bbmap align paired-end
2.4 years ago
mark.rose • 30
1
Vote
3
Replies
579
Views
bbduk: quality filtering and singletons
bbmap genome reads
2.5 years ago
rororo • 0
1
Vote
7
Replies
942
Views
BBMap output meaning
bbmap rnaseq
2.7 years ago
Tania • 120 • updated 2.6 years ago
Biostar 20
3
Votes
7
Replies
1.1k
Views
Why different rna-seq aligners need to be used for Ion Torrent data compared with illumina?
RNA-Seq tophat hisat2 bbmap mira
2.6 years ago
Vasu • 330 • updated 2.6 years ago
h.mon 25k
4
Votes
5
Replies
496
Views
Generate artificial reads
bbmap fastq randomreads
2.6 years ago
finswimmer 11k • updated 2.6 years ago
Joe 12k
0
Votes
3
Replies
634
Views
bbduk for pre-processing
bbduk bbmap reads pre-processing
2.7 years ago
deepti1rao • 20 • updated 2.7 years ago
genomax 68k
1
Vote
0
Replies
677
Views
Problem in doing reference based alignment using BBMap
bbmap alignment Assembly
2.7 years ago
assem_new • 10
2
Votes
2
Replies
1.9k
Views
Tool: Introducing CrossBlock, a BBTool for removing cross-contamination
Contamination Tool bbmap crossblock mda
3.5 years ago
Brian Bushnell 16k • updated 2.7 years ago
awwood • 0
0
Votes
2
Replies
705
Views
aligning Illumina mate-pair/ log mate pair libraries using BBMAP
bbmap alignment
2.8 years ago
bio_d • 0
14
Votes
17
Replies
2.0k
Views
HiSeq 4000 PhiX screening and removal using bbduk
spikein filtering bbmap bbduk phix
3.0 years ago
Anand Rao • 210
6
Votes
9
Replies
836
Views
Pipe BBMap reformat output into SAMtools
bbmap samtools pipe
3.0 years ago
bruce.moran • 610
2
Votes
3
Replies
638
Views
dedupe.sh from bbmap excludes contigs with insufficient overlap
dedupe bbmap contig assembly
3.1 years ago
cristian • 220
15
Votes
6
Replies
3.7k
Views
Tool: BBSketch - A Tool for Rapid Sequence Comparison
minhash bbmap blast sketch Tool
3.1 years ago
Brian Bushnell 16k
0
Votes
2
Replies
661
Views
Simulated overlapping paired end reads for 16S
bbmap
3.1 years ago
David • 150
1
Vote
7
Replies
762
Views
Extension of reads
sequence samtool BBMap
3.1 years ago
madhu.9124 • 40
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