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Showing : bbmap • reset
3
Votes
2
Replies
125
Views
Keep only reads where both map using BBTools
3 Votes | 2 Replies
bbtools bbmap
12 months ago
dylan.lawrence • 10 • updated 12 months ago
genomax 68k
64
Votes
63
Replies
9.9k
Views
Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
64 Votes | 63 Replies
compression bbmap clumpify pigz storage Tool
3.3 years ago
Brian Bushnell 16k • updated 12 months ago
snishtala03 • 10
6
Votes
13
Replies
313
Views
Clumpify Input via Process Substitution
6 Votes | 13 Replies
bbmap clumpify
12 months ago
dario.garvan • 450
1
Vote
3
Replies
318
Views
Bulk quality interleaving with bbmap reformat command
1 Vote | 3 Replies
bbmap bbduk reformat bash loop
16 months ago
infenit101 • 20 • updated 13 months ago
ross_whetten • 10
7
Votes
8
Replies
426
Views
BBDuk.sh and BBDuk2.sh barcodefilter does not filter the reads
7 Votes | 8 Replies
BBMap BBDuk barcode illumina index fastq
14 months ago
chilifan • 70
0
Votes
4
Replies
242
Views
Simultaneous multiple read recruitment with BBMap?
0 Votes | 4 Replies
BBMap mapping
14 months ago
Rebecs Garner • 0
1
Vote
7
Replies
856
Views
java.lang.OutOfMemoryError: Java heap space not solve with -Xmx
1 Vote | 7 Replies
bbmap repair.sh paired-end OutOfMemoryError Xmx
15 months ago
mb2subi • 0
0
Votes
18
Replies
430
Views
BBMap randomreads.sh exact path to ref error: Could not find or load main class
0 Votes | 18 Replies
BBMap Java
15 months ago
Tawny • 130
0
Votes
1
Reply
282
Views
BBMAP fails to find secondary alignment
0 Votes | 1 Reply
bbmap secondary
17 months ago
mark.rose • 30 • updated 16 months ago
Biostar 20
1
Vote
6
Replies
309
Views
BBMAP paired end alignment problem
1 Vote | 6 Replies
BBMAP bbmap align paired-end
17 months ago
mark.rose • 30 • updated 17 months ago
h.mon 25k
2
Votes
3
Replies
275
Views
Tadpole assembler header
2 Votes | 3 Replies
bbmap bbtools tadpole
17 months ago
h.mon 25k
1
Vote
5
Replies
895
Views
bbmap split paired-end reads back into separated fastq files?
1 Vote | 5 Replies
genome bbmap next-gen sequencing alignment
18 months ago
c.e.chong • 10 • updated 18 months ago
genomax 68k
5
Votes
6
Replies
361
Views
Have bbduk retain quality scores in output after kmer trimming
5 Votes | 6 Replies
trim primer bbmap
18 months ago
caverill • 40
15
Votes
28
Replies
3.3k
Views
Introducing FilterByTile: Remove Low-Quality Reads Without Adding Bias
15 Votes | 28 Replies
quality filtering BBMap filterbytile Illumina Tool
3.3 years ago
Brian Bushnell 16k • updated 19 months ago
AllisonAnne • 0
0
Votes
7
Replies
290
Views
randomreads.sh simulated reads dont map to genome
0 Votes | 7 Replies
bbmap
20 months ago
grant.hovhannisyan ♦ 1.5k
2
Votes
8
Replies
235
Views
randomreads.sh simulated mates are far away
2 Votes | 8 Replies
bbmap
20 months ago
grant.hovhannisyan ♦ 1.5k • updated 20 months ago
h.mon 25k
5
Votes
3
Replies
620
Views
paired-end reads in BBMap randomreads.sh
5 Votes | 3 Replies
randomreads BBMap
21 months ago
grant.hovhannisyan ♦ 1.5k • updated 21 months ago
genomax 68k
0
Votes
1
Reply
344
Views
BBMAP mapping Algorithm explanation: HELP!
0 Votes | 1 Reply
mapping bbmap NGS alignment
22 months ago
midox • 220 • updated 22 months ago
genomax 68k
0
Votes
4
Replies
595
Views
Poly A trimming from RNA-seq data by bbduk (bbmap package)
0 Votes | 4 Replies
polyA trimming RNA-seq bbduk bbmap
22 months ago
seta ♦ 1.2k • updated 22 months ago
WouterDeCoster 39k
0
Votes
7
Replies
428
Views
calctruequality in bbmap
0 Votes | 7 Replies
Assembly BBtools calctruequality q score BBmap
22 months ago
coyk • 0
0
Votes
5
Replies
564
Views
SSPACE for scaffolding
0 Votes | 5 Replies
sspace scaffolding contigs insert size bbmap
23 months ago
deepti1rao • 20 • updated 22 months ago
RamRS 21k
1
Vote
5
Replies
648
Views
BBDuk output different sized paired end reads
1 Vote | 5 Replies
bbmap bbduk preprocessing
23 months ago
GLFrey • 20 • updated 23 months ago
h.mon 25k
2
Votes
7
Replies
794
Views
BBMap genome indexing - java issue?
2 Votes | 7 Replies
BBMap java indexing
24 months ago
CAnna • 20
1
Vote
4
Replies
535
Views
Metagenome Read Simulators
1 Vote | 4 Replies
metagenomics simulation WGS BBmap
2.0 years ago
alesssia • 520
2
Votes
2
Replies
947
Views
bbmap callvariants - how to add sample names, how to get 0/0 alleles back?
2 Votes | 2 Replies
bbmap callvariants.sh
2.1 years ago
Philipp Bayer 6.1k
0
Votes
8
Replies
715
Views
bbmap paired-end alignment problem
0 Votes | 8 Replies
bbmap align paired-end
2.1 years ago
mark.rose • 30
1
Vote
3
Replies
570
Views
bbduk: quality filtering and singletons
1 Vote | 3 Replies
bbmap genome reads
2.2 years ago
rororo • 0
1
Vote
7
Replies
934
Views
BBMap output meaning
1 Vote | 7 Replies
bbmap rnaseq
2.4 years ago
Tania • 120 • updated 2.2 years ago
Biostar 20
3
Votes
7
Replies
1.1k
Views
Why different rna-seq aligners need to be used for Ion Torrent data compared with illumina?
3 Votes | 7 Replies
RNA-Seq tophat hisat2 bbmap mira
2.2 years ago
Vasu • 330 • updated 2.2 years ago
h.mon 25k
4
Votes
5
Replies
488
Views
Generate artificial reads
4 Votes | 5 Replies
bbmap fastq randomreads
2.3 years ago
finswimmer 11k • updated 2.3 years ago
Joe 12k
0
Votes
3
Replies
622
Views
bbduk for pre-processing
0 Votes | 3 Replies
bbduk bbmap reads pre-processing
2.4 years ago
deepti1rao • 20 • updated 2.4 years ago
genomax 68k
1
Vote
0
Replies
670
Views
Problem in doing reference based alignment using BBMap
1 Vote | 0 Replies
bbmap alignment Assembly
2.4 years ago
assem_new • 10
2
Votes
2
Replies
1.9k
Views
Introducing CrossBlock, a BBTool for removing cross-contamination
2 Votes | 2 Replies
Contamination Tool bbmap crossblock mda
3.2 years ago
Brian Bushnell 16k • updated 2.4 years ago
awwood • 0
0
Votes
2
Replies
698
Views
aligning Illumina mate-pair/ log mate pair libraries using BBMAP
0 Votes | 2 Replies
bbmap alignment
2.4 years ago
bio_d • 0
14
Votes
17
Replies
2.0k
Views
HiSeq 4000 PhiX screening and removal using bbduk
14 Votes | 17 Replies
spikein filtering bbmap bbduk phix
2.6 years ago
Anand Rao • 210
6
Votes
9
Replies
829
Views
Pipe BBMap reformat output into SAMtools
6 Votes | 9 Replies
bbmap samtools pipe
2.7 years ago
bruce.moran • 610
2
Votes
3
Replies
629
Views
dedupe.sh from bbmap excludes contigs with insufficient overlap
2 Votes | 3 Replies
dedupe bbmap contig assembly
2.7 years ago
cristian • 220
15
Votes
6
Replies
3.7k
Views
BBSketch - A Tool for Rapid Sequence Comparison
15 Votes | 6 Replies
minhash bbmap blast sketch Tool
2.7 years ago
Brian Bushnell 16k
0
Votes
2
Replies
655
Views
Simulated overlapping paired end reads for 16S
0 Votes | 2 Replies
bbmap
2.7 years ago
David • 150
1
Vote
7
Replies
749
Views
Extension of reads
1 Vote | 7 Replies
sequence samtool BBMap
2.8 years ago
madhu.9124 • 40
68 results • Page 1 of 2
Recent Votes
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
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Recent Replies
Answer: About CIRI's output by Magdalena • 0
Hello Johann, Hope you are well. Any progress in the topic? Did you manage to deal with CIRI output file? I have similar problems right no…
Comment: This is a test post by Natay Aberra 0
@Natay-Aberra test the mentions still work
Answer: This is a test post by Natay Aberra 0
Add an answer to this
Comment: This is a test post by Natay Aberra 0
Add a comment to this
Comment: Test tweet by genomax 68k
https://twitter.com/EricTopol/status/1241821959584747521?s=09
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by mdondrup+1463528 • 30
one more maybe
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by Michael 100
and another one....
Comment: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by Michael 100
i am nutz
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights? by Michael 100
bla`enter code here` #!/bin/basj echo # hi
Comment: How to deal with the .sra.vdbcache files after downloading a sra file? by ATpoint 17k
Just delete.
Comment: How to deal with the .sra.vdbcache files after downloading a sra file? by Jon • 10
Did you solve the mystery? I have the same question and I could not find any clear answers...
Comment: Testing recipe link by Istvan Albert 80k
@genomax18713 change your handle to make it simpler
Comment: Testing recipe link by Istvan Albert 80k
let's see if the parenthesis at the end is fixed (https://www.biostars.org) or like this (see https://www.biostars.org)
Comment: Testing by ATpoint 17k
@ATpoint ping
Answer: How do play audio (playsound) in background of Python script? by genomax 68k
https://gist.github.com/afrendeiro/6732a46b949e864d6803
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