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Showing : bam • reset
8
Votes
13
Replies
216
Views
8 follow
Forum: Recovering bam files after unknow deletion in the storage
5 months ago Gabriel Wajnberg • 60 • updated 3 months ago Kristy • 0
0
Votes
1
Reply
77
Views
Available tools that can pick up the the alignment with highest mapping quality
6 months ago gerrybio2010 • 0 • updated 6 months ago WouterDeCoster 39k
1
Vote
11
Replies
178
Views
Fastq to BAM
6 months ago zliew • 0
21
Votes
18
Replies
1.2k
Views
Tool: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
6 months ago Charlotte.Herzeel • 140
0
Votes
1
Reply
151
Views
Merging BAM file with Samtools
6 months ago seta ♦ 1.2k • updated 6 months ago Devon Ryan 90k
1
Vote
0
Replies
128
Views
Confused about read pair orientation in bam
6 months ago malthesr • 10
0
Votes
3
Replies
138
Views
How to tell whether a bam file is "analysis-ready" (as defined by GATK)?
6 months ago minimax • 0
0
Votes
3
Replies
155
Views
scRNAseq: Split FASTQ into cell specific FASTQ Files
6 months ago niklas.lang • 0
3
Votes
4
Replies
118
Views
Getting only Indels and no SNPs after variant calling variant calling using HaplotypeCaller
6 months ago Susmita Mandal • 40
0
Votes
1
Reply
94
Views
FastQC Failed to create archive: null
7 months ago jason.williams • 0
1
Vote
1
Reply
139
Views
Read TCGA BAM files into TEtranscripts tool (python) without downloading them?
7 months ago Gema Sanz • 70
5
Votes
2
Replies
158
Views
How does bedtools bamtobed calculate end position
7 months ago 6timings • 0 • updated 7 months ago John Marshall ♦ 1.5k
0
Votes
0
Replies
122
Views
View MAF file and the reference sequence in a genome viewer/annotator along with SAM/BAM?
7 months ago DanielC • 80
12
Votes
13
Replies
9.1k
Views
6 follow
Comparing And Plotting Coverage Between Two Bam Files
7.5 years ago Rubal7 • 760 • updated 7 months ago john.e.major.jr • 0
1
Vote
2
Replies
130
Views
How to split both bam files and annotation files as per chromosome number?
7 months ago Glory Basumata • 140
0
Votes
1
Reply
192
Views
Extracting CIGAR string from a specific region of a read in a bam file using pysam?
7 months ago kiki4133 • 0
6
Votes
9
Replies
200
Views
How to separate chrY from a WGS vcf file?
7 months ago krt • 0
1
Vote
5
Replies
290
Views
SNP calling with SAMtools on multiple samples
8 months ago madeira.ag • 0 • updated 7 months ago Begali • 0
12
Votes
7
Replies
2.7k
Views
Trying To Pull Regions From An Online Bam File Without Downloading
7.4 years ago Wjeck • 480 • updated 7 months ago Biostar 20
4
Votes
6
Replies
272
Views
6 follow
Off topic: How to visualize bam, bed and vcf files programmatically using Python and Shell or a Linux software?
8 months ago informatics_warwick • 0 • updated 7 months ago dariober 10k
1
Vote
4
Replies
225
Views
Filtering BAM file to include PE reads that did not map, even though their mate did
8 months ago nute11a • 0 • updated 8 months ago Istvan Albert 80k
0
Votes
2
Replies
172
Views
How to get output with read counts and read count percentages from bam file?
8 months ago bayramliaziz • 0 • updated 8 months ago WouterDeCoster 39k
5
Votes
10
Replies
271
Views
Subsampling one bamfile multiple times?
8 months ago wjdgmlcjf • 0
3
Votes
7
Replies
227
Views
Bam file MC tag as integer
8 months ago chariko • 30
3
Votes
5
Replies
223
Views
How to find a variant in a particular position in a bam file only using samtools
8 months ago tw617 • 30 • updated 8 months ago swbarnes2 5.7k
4
Votes
2
Replies
205
Views
Convert 2 SE bam to PE bam (alignment BWA mem)
9 months ago mynameliuxiang • 0 • updated 8 months ago zx8754 7.5k
0
Votes
4
Replies
308
Views
Bam header editing
8 months ago Huynh Nguyen • 0 • updated 8 months ago Istvan Albert 80k
0
Votes
5
Replies
225
Views
Off topic: Error when split WES data into sub-files
8 months ago Laven9 • 0
0
Votes
2
Replies
135
Views
Read In Function for BAM file processing
8 months ago Jonas.Koch • 0
3
Votes
7
Replies
239
Views
Extract coverage from each nucleotide position of a genome in a bam file
9 months ago MAPK ♦ 1.4k
1
Vote
1
Reply
193
Views
How do get additional bam statistics
9 months ago t-jim • 30
8
Votes
12
Replies
326
Views
How to report genomic intervals essentailly overlapping in all files?
9 months ago Vijay Lakhujani 4.1k
3
Votes
8
Replies
216
Views
Find common reads between two bam files
9 months ago yp19 • 20 • updated 9 months ago Pierre Lindenbaum 120k
11
Votes
0
Replies
387
Views
Tutorial: Generating consensus sequence from bam file
9 months ago finswimmer 11k • updated 9 months ago WouterDeCoster 39k
1
Vote
2
Replies
303
Views
How treat a Bam file with mutiple read groups (RG)
9 months ago zamani_2012 • 0 • updated 9 months ago Pierre Lindenbaum 120k
3
Votes
3
Replies
323
Views
RNA-Seq QC for aligned files (bam)
9 months ago genomics Newbie • 20 • updated 9 months ago Friederike 4.2k
1
Vote
2
Replies
190
Views
Might @PG headers affect downstream analyses, and how can I safely remove them from a BAM file?
9 months ago olikidrod • 0 • updated 9 months ago h.mon 25k
17
Votes
28
Replies
516
Views
collapsing transcript expression to gene-level expression
9 months ago F ♦ 3.4k
1
Vote
3
Replies
223
Views
Subsampling aligned SAM/BAM files for RNA-seq analysis
9 months ago mohammedtoufiq91 • 40 • updated 9 months ago WouterDeCoster 39k
4
Votes
4
Replies
191
Views
How to remove bam files that don't contain matching reads
9 months ago samlambrechts299 • 130 • updated 9 months ago Pierre Lindenbaum 120k
1,175 results • Page 1 of 30
Recent Votes
Answer: test question 1
Answer: test question 1
Markdown
Comment: Markdown
New test post with the AJAX system
Answer: Markdown
Markdown
A: Which Are The Best Programming Languages For A Bioinformatician?
A: Which Are The Best Programming Languages For A Bioinformatician?
Answer: Which Are The Best Programming Languages For A Bioinformatician?
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Recent Replies
Comment: " testing dfg " by Natay Aberra 0
Thanks a lot!
Comment: " testing dfg " by RamRS 21k
Drag and drop is frigging ***AWESOME***
Answer: " testing dfg " by Natay Aberra 0
Hello, test drag and drop of comments
Comment: " testing dfg " by RamRS 21k
Testing twitter embedding: https://www.twitter.com/statnews/status/656174802911129600 https://twitter.com/statnews/status/660506539762057…
Answer: test question 1 by Linda • 20
more than 10 characters
Comment: Which Are The Best Programming Languages For A Bioinformatician? by Digital • 0
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Comment: " testing dfg " by RamRS 21k
Testing highlighting functionality. Using `<span style="background-color: #FFFF00">`: <span style="background-color: #FFFF00">Span trial</…
Comment: " testing dfg " by RamRS 21k
Testing <u>underline</u> functionality.
Comment: " testing dfg " by RamRS 21k
Testing comment with parentheses in URL: (this URL: https://www.ncbi.nlm.nih.gov/search/all/?term=BRCA1%20AND%20(Human%20OR%20Mouse))
Comment: get gene biotype for hg38 refseq by Natay Aberra 0
test the bumping
Comment: get gene biotype for hg38 refseq by genomax 68k
http://test.biostars.org/accounts/profile/2/ http://test.biostars.org/p/34/
Comment: New test post with the AJAX system by Natay Aberra 0
Yeah we will probably end up doing that.
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/accounts/profile/18713/ http://test.biostars.org/p/p371267/#p371295 test the bumping
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/p/p371285/ http://test.biostars.org/accounts/profile/user-2/
Comment: New test post with the AJAX system by genomax 68k
Checking to see if this comment bumps the thread to top.
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