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1,175 results • Page 1 of 30
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Showing : bam • reset
8
Votes
13
Replies
172
Views
8 follow
Forum: Recovering bam files after unknow deletion in the storage
4 months ago Gabriel Wajnberg • 60 • updated 7 weeks ago Kristy • 0
0
Votes
1
Reply
64
Views
Available tools that can pick up the the alignment with highest mapping quality
4 months ago gerrybio2010 • 0 • updated 4 months ago WouterDeCoster 39k
1
Vote
11
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157
Views
Fastq to BAM
4 months ago zliew • 0
21
Votes
18
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1.1k
Views
Tool: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
4 months ago Charlotte.Herzeel • 140
0
Votes
1
Reply
142
Views
Merging BAM file with Samtools
4 months ago seta ♦ 1.2k • updated 4 months ago Devon Ryan 90k
1
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0
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119
Views
Confused about read pair orientation in bam
4 months ago malthesr • 10
0
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3
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133
Views
How to tell whether a bam file is "analysis-ready" (as defined by GATK)?
5 months ago minimax • 0
0
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3
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147
Views
scRNAseq: Split FASTQ into cell specific FASTQ Files
5 months ago niklas.lang • 0
3
Votes
4
Replies
108
Views
Getting only Indels and no SNPs after variant calling variant calling using HaplotypeCaller
5 months ago Susmita Mandal • 40
0
Votes
1
Reply
86
Views
FastQC Failed to create archive: null
5 months ago jason.williams • 0
1
Vote
1
Reply
129
Views
Read TCGA BAM files into TEtranscripts tool (python) without downloading them?
5 months ago Gema Sanz • 70
5
Votes
2
Replies
145
Views
How does bedtools bamtobed calculate end position
5 months ago 6timings • 0 • updated 5 months ago John Marshall ♦ 1.5k
0
Votes
0
Replies
116
Views
View MAF file and the reference sequence in a genome viewer/annotator along with SAM/BAM?
5 months ago DanielC • 80
12
Votes
13
Replies
9.1k
Views
6 follow
Comparing And Plotting Coverage Between Two Bam Files
7.4 years ago Rubal7 • 760 • updated 5 months ago john.e.major.jr • 0
1
Vote
2
Replies
116
Views
How to split both bam files and annotation files as per chromosome number?
5 months ago Glory Basumata • 140
0
Votes
1
Reply
181
Views
Extracting CIGAR string from a specific region of a read in a bam file using pysam?
5 months ago kiki4133 • 0
6
Votes
9
Replies
194
Views
How to separate chrY from a WGS vcf file?
6 months ago krt • 0
1
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5
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271
Views
SNP calling with SAMtools on multiple samples
6 months ago madeira.ag • 0 • updated 6 months ago Begali • 0
12
Votes
7
Replies
2.7k
Views
Trying To Pull Regions From An Online Bam File Without Downloading
7.3 years ago Wjeck • 480 • updated 6 months ago Biostar 20
4
Votes
6
Replies
256
Views
6 follow
Off topic: How to visualize bam, bed and vcf files programmatically using Python and Shell or a Linux software?
6 months ago informatics_warwick • 0 • updated 6 months ago dariober 10k
1
Vote
4
Replies
212
Views
Filtering BAM file to include PE reads that did not map, even though their mate did
6 months ago nute11a • 0 • updated 6 months ago Istvan Albert 80k
0
Votes
2
Replies
164
Views
How to get output with read counts and read count percentages from bam file?
6 months ago bayramliaziz • 0 • updated 6 months ago WouterDeCoster 39k
5
Votes
10
Replies
246
Views
Subsampling one bamfile multiple times?
6 months ago wjdgmlcjf • 0
3
Votes
7
Replies
207
Views
Bam file MC tag as integer
6 months ago chariko • 30
3
Votes
5
Replies
214
Views
How to find a variant in a particular position in a bam file only using samtools
6 months ago tw617 • 30 • updated 6 months ago swbarnes2 5.7k
4
Votes
2
Replies
196
Views
Convert 2 SE bam to PE bam (alignment BWA mem)
7 months ago mynameliuxiang • 0 • updated 6 months ago zx8754 7.5k
0
Votes
4
Replies
287
Views
Bam header editing
7 months ago Huynh Nguyen • 0 • updated 7 months ago Istvan Albert 80k
0
Votes
5
Replies
207
Views
Off topic: Error when split WES data into sub-files
7 months ago Laven9 • 0
0
Votes
2
Replies
126
Views
Read In Function for BAM file processing
7 months ago Jonas.Koch • 0
3
Votes
7
Replies
219
Views
Extract coverage from each nucleotide position of a genome in a bam file
7 months ago MAPK ♦ 1.4k
1
Vote
1
Reply
185
Views
How do get additional bam statistics
7 months ago t-jim • 30
8
Votes
12
Replies
314
Views
How to report genomic intervals essentailly overlapping in all files?
7 months ago Vijay Lakhujani 4.1k
3
Votes
8
Replies
204
Views
Find common reads between two bam files
7 months ago yp19 • 20 • updated 7 months ago Pierre Lindenbaum 120k
11
Votes
0
Replies
370
Views
Tutorial: Generating consensus sequence from bam file
7 months ago finswimmer 11k • updated 7 months ago WouterDeCoster 39k
1
Vote
2
Replies
289
Views
How treat a Bam file with mutiple read groups (RG)
7 months ago zamani_2012 • 0 • updated 7 months ago Pierre Lindenbaum 120k
3
Votes
3
Replies
308
Views
RNA-Seq QC for aligned files (bam)
7 months ago genomics Newbie • 20 • updated 7 months ago Friederike 4.2k
1
Vote
2
Replies
182
Views
Might @PG headers affect downstream analyses, and how can I safely remove them from a BAM file?
7 months ago olikidrod • 0 • updated 7 months ago h.mon 25k
17
Votes
28
Replies
502
Views
collapsing transcript expression to gene-level expression
7 months ago F ♦ 3.4k
1
Vote
3
Replies
207
Views
Subsampling aligned SAM/BAM files for RNA-seq analysis
7 months ago mohammedtoufiq91 • 40 • updated 7 months ago WouterDeCoster 39k
4
Votes
4
Replies
180
Views
How to remove bam files that don't contain matching reads
7 months ago samlambrechts299 • 130 • updated 7 months ago Pierre Lindenbaum 120k
1,175 results • Page 1 of 30
Recent Votes
Markdown
Comment: Markdown
New test post with the AJAX system
Answer: Markdown
Markdown
A: Which Are The Best Programming Languages For A Bioinformatician?
A: Which Are The Best Programming Languages For A Bioinformatician?
Answer: Which Are The Best Programming Languages For A Bioinformatician?
how do I run this recipe
C: How to apply vcftools --diff to identify vcf-specific variants/records
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Recent Replies
Comment: " testing dfg " by RamRS 21k
Testing highlighting functionality. Using `<span style="background-color: #FFFF00">`: <span style="background-color: #FFFF00">Span trial</…
Comment: " testing dfg " by RamRS 21k
Testing <u>underline</u> functionality.
Answer: Which Are The Best Programming Languages For A Bioinformatician? by Anna • 0
I could recommend you this research - https://www.romexsoft.com/blog/aws-hipaa-compliance-best-practices-checklist/
Comment: " testing dfg " by RamRS 21k
Testing comment with parentheses in URL: (this URL: https://www.ncbi.nlm.nih.gov/search/all/?term=BRCA1%20AND%20(Human%20OR%20Mouse))
Comment: get gene biotype for hg38 refseq by Natay Aberra 0
test the bumping
Comment: get gene biotype for hg38 refseq by genomax 68k
http://test.biostars.org/accounts/profile/2/ http://test.biostars.org/p/34/
Comment: New test post with the AJAX system by Natay Aberra 0
Yeah we will probably end up doing that.
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/accounts/profile/18713/ http://test.biostars.org/p/p371267/#p371295 test the bumping
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/p/p371285/ http://test.biostars.org/accounts/profile/user-2/
Comment: New test post with the AJAX system by genomax 68k
Checking to see if this comment bumps the thread to top.
Comment: Markdown by genomax 68k
http://test.biostars.org/p/p371285/
Comment: Markdown by genomax 68k
@nba5048: Why is the original post showing up in separate sections? No way to use old style reference to users: http://test.biostars.org/a…
Comment: Markdown by Natay Aberra 0
Check your biostar messages, You did get a notification.
Comment: Markdown by ATpoint 17k
Test image: ![enter image description here][1] [1]: http://oi66.tinypic.com/33kdnjt.jpg
Comment: Markdown by ATpoint 17k
Nope, no notification.
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