Biostar Beta. Not for public use.
Limit to: all time
all time today this week this month this year
1,157 results • Page 1 of 24
Sort by: Rank
Rank Views Votes Replies
Showing : bam • reset
0
Votes
1
Reply
105
Views
Available tools that can pick up the the alignment with highest mapping quality
bam mapping quality
16 months ago
gerrybio2010 • 0 • updated 16 months ago
WouterDeCoster 39k
1
Vote
11
Replies
248
Views
Fastq to BAM
bam fastq
17 months ago
zliew • 0
21
Votes
18
Replies
1.2k
Views
Tool: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
sam bam markduplicates sort bqsr Tool
17 months ago
Charlotte.Herzeel • 140
0
Votes
1
Reply
189
Views
Merging BAM file with Samtools
samtools merge BAM
17 months ago
seta ♦ 1.2k • updated 17 months ago
Devon Ryan 90k
1
Vote
0
Replies
160
Views
Confused about read pair orientation in bam
alignment bam bwa paired end
17 months ago
malthesr • 10
0
Votes
3
Replies
173
Views
How to tell whether a bam file is "analysis-ready" (as defined by GATK)?
bam gatk bestpractice
17 months ago
minimax • 0
0
Votes
3
Replies
190
Views
scRNAseq: Split FASTQ into cell specific FASTQ Files
RNA-Seq Cell Ranger Split Demultiplex BAM
17 months ago
niklas.lang • 0
3
Votes
4
Replies
162
Views
Getting only Indels and no SNPs after variant calling variant calling using HaplotypeCaller
RNA-Seq BAM SNP GATK Variant Calling
17 months ago
Susmita Mandal • 40
0
Votes
1
Reply
129
Views
FastQC Failed to create archive: null
sequence qc bam java fastqc
17 months ago
jason.williams • 0
1
Vote
1
Reply
174
Views
Read TCGA BAM files into TEtranscripts tool (python) without downloading them?
TCGA bam linux RNA-seq
17 months ago
Gema Sanz • 70
5
Votes
2
Replies
191
Views
How does bedtools bamtobed calculate end position
bed bam bedtools
18 months ago
6timings • 0 • updated 18 months ago
John Marshall ♦ 1.5k
0
Votes
0
Replies
145
Views
View MAF file and the reference sequence in a genome viewer/annotator along with SAM/BAM?
SAM BAM MAF viewer
18 months ago
DanielC • 80
12
Votes
13
Replies
9.1k
Views
Comparing And Plotting Coverage Between Two Bam Files
bam coverage genome chromosome
8.4 years ago
Rubal7 • 760 • updated 18 months ago
john.e.major.jr • 0
1
Vote
2
Replies
166
Views
How to split both bam files and annotation files as per chromosome number?
split bam sam chr annotation
18 months ago
Glory Basumata • 140
0
Votes
1
Reply
234
Views
Extracting CIGAR string from a specific region of a read in a bam file using pysam?
pysam RNA-Seq BAM CIGAR
18 months ago
kiki4133 • 0
6
Votes
9
Replies
237
Views
How to separate chrY from a WGS vcf file?
tabix dantelabs wgs yfull bam
18 months ago
krt • 0
1
Vote
5
Replies
327
Views
SNP calling with SAMtools on multiple samples
SNP samtools vcf bam
19 months ago
madeira.ag • 0 • updated 18 months ago
Begali • 0
12
Votes
7
Replies
2.8k
Views
Trying To Pull Regions From An Online Bam File Without Downloading
samtools igv bam
8.3 years ago
Wjeck • 480 • updated 18 months ago
Biostar 20
1
Vote
4
Replies
268
Views
Filtering BAM file to include PE reads that did not map, even though their mate did
BAM samtools filter mapping read
19 months ago
nute11a • 0 • updated 19 months ago
Istvan Albert 87k
0
Votes
2
Replies
217
Views
How to get output with read counts and read count percentages from bam file?
read counts bam samtools picard
19 months ago
bayramliaziz • 0 • updated 19 months ago
WouterDeCoster 39k
5
Votes
10
Replies
312
Views
Subsampling one bamfile multiple times?
sequencing bam subsample
19 months ago
wjdgmlcjf • 0
3
Votes
7
Replies
269
Views
Bam file MC tag as integer
ValidateSamFile bam sam MC
19 months ago
chariko • 30
3
Votes
5
Replies
264
Views
How to find a variant in a particular position in a bam file only using samtools
bam sam samtools
19 months ago
tw617 • 30 • updated 19 months ago
swbarnes2 5.7k
4
Votes
2
Replies
236
Views
Convert 2 SE bam to PE bam (alignment BWA mem)
alignment bam bwa
20 months ago
mynameliuxiang • 0 • updated 19 months ago
zx8754 7.5k
0
Votes
4
Replies
356
Views
Bam header editing
bam header
19 months ago
Huynh Nguyen • 0 • updated 19 months ago
Istvan Albert 87k
0
Votes
2
Replies
172
Views
Read In Function for BAM file processing
Script BAM
19 months ago
Jonas.Koch • 0
3
Votes
7
Replies
283
Views
Extract coverage from each nucleotide position of a genome in a bam file
bam bed coverage
19 months ago
MAPK ♦ 1.4k
1
Vote
1
Reply
225
Views
How do get additional bam statistics
RNA-Seq alignment bam samtools
19 months ago
t-jim • 30
8
Votes
12
Replies
371
Views
How to report genomic intervals essentailly overlapping in all files?
bedtools bed bam
19 months ago
Vijay Lakhujani 4.1k
3
Votes
8
Replies
259
Views
Find common reads between two bam files
sequencing bam reads
20 months ago
yp19 • 20 • updated 20 months ago
Pierre Lindenbaum 120k
11
Votes
0
Replies
432
Views
Tutorial: Generating consensus sequence from bam file
bam fasta consensus Tutorial
20 months ago
finswimmer 11k • updated 20 months ago
WouterDeCoster 39k
1
Vote
2
Replies
337
Views
How treat a Bam file with mutiple read groups (RG)
next-gen BAM GATK picard read group
20 months ago
zamani_2012 • 0 • updated 20 months ago
Pierre Lindenbaum 120k
3
Votes
3
Replies
357
Views
RNA-Seq QC for aligned files (bam)
RNA-Seq bam qc
20 months ago
genomics Newbie • 20 • updated 20 months ago
Friederike 4.2k
1
Vote
2
Replies
227
Views
Might @PG headers affect downstream analyses, and how can I safely remove them from a BAM file?
bam @PG read groups
20 months ago
olikidrod • 0 • updated 20 months ago
h.mon 25k
17
Votes
28
Replies
558
Views
collapsing transcript expression to gene-level expression
FeatureCounts BAM RNA-Seq
20 months ago
F ♦ 3.4k
1
Vote
3
Replies
255
Views
Subsampling aligned SAM/BAM files for RNA-seq analysis
RNA-Seq subsampling downsampling SAM BAM
20 months ago
mohammedtoufiq91 • 40 • updated 20 months ago
WouterDeCoster 39k
4
Votes
4
Replies
242
Views
How to remove bam files that don't contain matching reads
bowtie2 samtools BAM
20 months ago
samlambrechts299 • 130 • updated 20 months ago
Pierre Lindenbaum 120k
2
Votes
5
Replies
249
Views
Should I remove duplicates?
BAM Duplicates next-gen
20 months ago
F ♦ 3.4k • updated 20 months ago
ATpoint 17k
1
Vote
6
Replies
207
Views
Seeing only "N's" in tablet genome viewer?
genome viewer bam
20 months ago
tuj92050 • 0
2
Votes
4
Replies
316
Views
Extracting a chromosome from an indexed bam file?
bam chromosome samtools
20 months ago
tuj92050 • 0
2
Votes
1
Reply
1.4k
Views
Bam File With Maq
bam
9.2 years ago
Sara • 130 • updated 20 months ago
Biostar 20
0
Votes
3
Replies
266
Views
Count matrix showing different results than UCSC tracks
ucsc featurecounts bigwig bam mm10
20 months ago
raquelgarza95 • 40
0
Votes
3
Replies
275
Views
Convert BAM files to paired end FASTQ
Samtools BAM FASTQ
20 months ago
berke.toptas • 0 • updated 20 months ago
JC 7.9k
3
Votes
5
Replies
230
Views
Remove duplicate readnames from a bam file
atac-seq duplicates BAM duplicate read names
20 months ago
garnerim1988 • 0
0
Votes
0
Replies
212
Views
From mpileup on bam files to TMB calculation, how is it done?
mutations TMB snps bam mpileup
20 months ago
Pin.Bioinf • 240
0
Votes
0
Replies
182
Views
Fixing inconsistent flags (strand info set for only one read) between RNA-seq read pairs with samtools/picard
RNA-Seq bam picard samtools fixmate
20 months ago
ophilia30092 • 0
0
Votes
4
Replies
286
Views
Understanding the SA tag, Samtools FLAG, and Chimeric Alignments
alignment bam
20 months ago
nzs208 • 0
0
Votes
6
Replies
2.7k
Views
How do I calculate the total read depth and allele frequency using just the target bed file and aligned bam
bam bed mpileup allele frequency
5.3 years ago
bobrowdy123 • 0 • updated 20 months ago
Biostar 20
7
Votes
7
Replies
177
Views
Detecting Klinefelter from genomic files
klinefelter vcf bam fastq
20 months ago
paulcaiella • 0
2
Votes
3
Replies
195
Views
Identify deletion in multiple bam files compared to the same bacterial reference
bedtools bam
20 months ago
David • 150
1,157 results • Page 1 of 24
Recent Votes
Comment: Testing image upload
Testing spam
Random SNPs simulation?
How do play audio (playsound) in background of Python script?
A: Random SNPs simulation?
Biostar Forum Posting Guidelines
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Recent Locations • All
india, 14 hours ago
United States, 1 day ago
texas, 1 day ago
Florida, 1 day ago
University Park, 1 day ago
Recent Awards • All
Appreciated to lieven.sterck 5.1k
Commentator to maegsul • 140
Appreciated to Sej Modha 4.2k
Appreciated to Sej Modha 4.2k
Appreciated to Sej Modha 4.2k
Appreciated to Sej Modha 4.2k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Recent Replies
Answer: How do play audio (playsound) in background of Python script? by stefenzafar • 0
The author of this blog wants to tell us How do play audio (playsound) in the background of Python script? The easy and short way to play a…
Comment: KOBAS server is down by Pablo Fernando • 0
http://kobas.cbi.pku.edu.cn/kobas3/annotate/
Answer: Computational Programmer / Analyst For Cardio-Metabolic Disease Research by sekapog652 • 0
An analyst for cardiometabolic disease research is shared. This whole research is completed through the programming computation method. I i…
Answer: Ngs Course Medical Genomics, Leuven, 17-20 September 2013 by Tonya Sutton • 0
Such kinds Genomics should help twice in a year and i will prefer if administrations scheduled it on state level so everyone can participat…
Answer: Ngs Course Medical Genomics, Leuven, 17-20 September 2013 by Tonya Sutton • 0
Such kinds Genomics should help twice in a year and i will prefer if administrations scheduled it on state level so everyone can participat…
Answer: Best Graphics Gallery Or Blogs For Bioinformatics Use by sanjusaranya456 • 0
Ai - Blue Prism Training in Chennai | Certification | Online Courses AI is on the tip of everyone's tongue when they talk about the futu…
Answer: Best Graphics Gallery Or Blogs For Bioinformatics Use by ramya • 0
thank you for the posts... https://www.acte.in/android-training-in-chennai https://www.acte.in/android-training-in-chennai https://www.a…
Answer: Best Graphics Gallery Or Blogs For Bioinformatics Use by joachim • 0
I have created a free guide on graphics in R. You can check it out here: https://statisticsglobe.com/graphics-in-r
Comment: Testing mathjax by Natay Aberra 0
Testing mathjax with inline comment $ x -1 $
Answer: Testing mathjax by Natay Aberra 0
$ f(x) = 5\Pi $
Answer: Biostar Forum Posting Guidelines by jessica • 0
I'm glad and so happy I found this forum release, I couldn't find any knowledge on this topic prior to. I think this is an helpful …
Answer: Biostar Forum Posting Guidelines by jessica • 0
I'm glad and so happy I found this forum release, I couldn't find any knowledge on this topic prior to. I think this is an helpful post and…
Answer: Biostar Forum Posting Guidelines by jessica • 0
I am impressed by the information that you have on this forum content and This information is magnificent so wonderful release. I understan…
Answer: How do play audio (playsound) in background of Python script? by smileykhan1212 • 0
[Tableau course][1] is a well-rounded program that covers various concepts such as, Tableau basics, numerous Tableau products, different vi…
Comment: Testing image upload by RamRS 21k
At laaaaassst! My greatest invention is comp-a-leet!
Powered by the version 2.3.1