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41 results • Page
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Showing :
amplicon
•
reset
4
Votes
4
Replies
1.6k
Views
Assembly of amplicons
amplicon
assembly
pcr
4.4 years ago
Picasa
• 390
• updated 21 months ago
Biostar
20
0
Votes
2
Replies
2.4k
Views
error opening file after QIIME script: add_qiime_labels.py
qiime
amplicon
5.8 years ago
aester
• 0
• updated 23 months ago
Payal
• 30
1
Vote
1
Reply
762
Views
Trouble preparing paired-end (MiSeq 2x250), double-tagged and dual-indexed reads from metabarcoding study for DADA2 pipelin
sequencing
next-gen
metabarcoding
DADA2
amplicon
3.2 years ago
jack1120
• 30
• updated 2.1 years ago
magda.wutkowska
• 0
2
Votes
1
Reply
239
Views
Is there a benefict of denoising reads for project that are not using 16S amplicon ?
16S
denoising
illumina
amplicon
2.1 years ago
sacha
♦ 1.7k
• updated 2.1 years ago
Asaf
5.6k
1
Vote
5
Replies
352
Views
What coverage is recommended for amplicon sequencing?
amplicon
coverage
2.1 years ago
Picasa
• 390
1
Vote
4
Replies
320
Views
Bioinformatic tools for MyCOBIOME analysis.
fungi
sequencing
amplicon
ITS
bioinformatics
2.2 years ago
lugonauta
• 10
• updated 2.2 years ago
ashishbansal12300
• 0
0
Votes
5
Replies
311
Views
Amplicon Sequencing samples identification
amplicon
sequencing
data
fastq
2.2 years ago
bwczech
• 70
3
Votes
3
Replies
319
Views
Ilumina V2 vs V3 for amplicon sequencing
next-gen
sequencing
illumina
amplicon
2.3 years ago
joelslade
• 10
2
Votes
2
Replies
469
Views
Tool to combine two sequenced amplicons and align them to reference sequence
ngs
PCR
amplicon
alignment
2.4 years ago
laurenkleine18
• 10
• updated 2.4 years ago
Biostar
20
1
Vote
1
Reply
286
Views
Reference sequence for amplicon mapping
mapping
amplicon
Illumina
2.4 years ago
omar-pons
• 0
• updated 2.4 years ago
lieven.sterck
5.1k
0
Votes
3
Replies
310
Views
Phyloseq R error: Error in if (xi > xj) 1L else -1L : missing value where TRUE/FALSE needed
phyloseq
R
16S
amplicon
2.7 years ago
arsilan324
• 70
• updated 2.6 years ago
Biostar
20
1
Vote
2
Replies
1.0k
Views
controls for amplicon data - Which one to use and how?
DNA-seq
amplicon
control
5.9 years ago
Aurelie MLB
• 320
• updated 2.7 years ago
Biostar
20
0
Votes
8
Replies
550
Views
Normalization amplicon data using mean depth and coverage
normalization
amplicon
depth
coverage
2.8 years ago
sovrappensiero
• 10
3
Votes
3
Replies
673
Views
Doubt on removing duplicates on amplicon sequencing data
duplicates
amplicon
2.8 years ago
Picasa
• 390
• updated 2.8 years ago
Devon Ryan
90k
1
Vote
4
Replies
1.1k
Views
amplicon based germline CNV caller
amplicon
germline
CNV
3.5 years ago
J.F.Jiang
• 750
• updated 2.9 years ago
Biostar
20
1
Vote
1
Reply
563
Views
Detect exon deletion/duplication from NGS amplicon
amplicon
ngs
cnv
3.0 years ago
sacha
♦ 1.7k
• updated 3.0 years ago
Eric T.
♦ 2.4k
2
Votes
1
Reply
1.6k
Views
Training dataset for NGS HLA typing (reads >200bp from PCR amplicons)
NGS
HLA
Typing
Amplicon
6.2 years ago
Alvaro Sebastian
• 70
• updated 3.0 years ago
bounlu
• 170
0
Votes
4
Replies
569
Views
how to find the amplified region from aln.bam file
mi-seq
amplicon
paired end
3.3 years ago
trisha
• 10
9
Votes
7
Replies
2.0k
Views
Amplicon sequencing: how to handle adapters and primers?
amplicon
adapter trimming
3.4 years ago
lamteva.vera
• 160
• updated 3.4 years ago
Robert Sicko
• 570
0
Votes
4
Replies
560
Views
allelic unbalance for multiplex PCR based amplicon data
allelic
multiplex
PCR
amplicon
3.5 years ago
J.F.Jiang
• 750
• updated 3.5 years ago
Kevin Blighe
43k
5
Votes
4
Replies
1.1k
Views
Soft-clipping of reads in Amplicon-sequenced data
alignment
soft-clipping
amplicon
3.6 years ago
jsneaththompson
• 70
• updated 3.6 years ago
christacaggiano
• 30
8
Votes
5
Replies
2.1k
Views
Amplicon Sequencing Data Analysis
sequencing
sequence
amplicon
data analysis
3.6 years ago
t_stranger
• 40
• updated 3.6 years ago
WouterDeCoster
39k
0
Votes
3
Replies
678
Views
reads clustering of amplicon based sequencing
amplicon
reads clustering
NGS
3.8 years ago
andynkili
• 10
0
Votes
1
Reply
509
Views
How to build reference for an artificial reporter sequence in GATK?
GATK
amplicon
reference
3.8 years ago
yinboz
• 0
6
Votes
17
Replies
1.1k
Views
Checking mutation frequency for every base in metagenome amplicon sequencing
sequencing
alignment
gene
amplicon
3.9 years ago
wanderingstefan
• 30
0
Votes
0
Replies
840
Views
CNV tools for hybridization vs. amplicon capture WES data
CNV
hybridization
amplicon
bioinformatics tools
3.9 years ago
Jackie
• 70
2
Votes
3
Replies
1.4k
Views
Best pratices for variant calling on deep sequencing TruSeq Custom Amplicon data
amplicon
sequencing
variant calling
3.9 years ago
adp7
• 10
• updated 3.9 years ago
igor
7.7k
13
Votes
16
Replies
2.3k
Views
Mask or trim primer sequences in Amplicon sequencing
amplicon
mask
trimming
fastq
4.2 years ago
Paul
♦ 1.3k
0
Votes
1
Reply
924
Views
Errors with larger kmers
kmer
amplicon
4.7 years ago
hiimwalker
• 0
0
Votes
0
Replies
832
Views
Software for designing amplicon panels?
sequencing
next-gen
amplicon
multiplexed
4.8 years ago
lutz.fr
• 10
3
Votes
1
Reply
1.0k
Views
Merging two libraries of amplicon
sequencing
Amplicon
Overlapping
4.8 years ago
aswathykgp
• 10
• updated 4.8 years ago
liangjiao.xue
• 100
4
Votes
7
Replies
2.4k
Views
Targeted NGS: amplicon length vs read length
sequencing
next-gen
amplicon
4.9 years ago
Luca Beltrame
• 210
• updated 4.9 years ago
WouterDeCoster
39k
0
Votes
0
Replies
915
Views
amplicon longer than read
454Roche
pipeline
preprocessing
amplicon
5.5 years ago
pingEde
• 30
• updated 5.3 years ago
Biostar
20
6
Votes
7
Replies
2.3k
Views
variant calling on amplicon data
amplicon
variant
5.5 years ago
Richard
• 550
• updated 5.5 years ago
Zaag
• 720
1
Vote
4
Replies
2.2k
Views
Classify 16S Reads
16S
amplicon
7.5 years ago
sebabiokr
• 10
• updated 5.6 years ago
Josh Herr
5.6k
12
Votes
4
Replies
2.5k
Views
Count reads within region
bedtools
samtools
amplicon
count reads
5.6 years ago
Karol Pal jr.
• 20
• updated 5.6 years ago
Alex Reynolds
28k
0
Votes
3
Replies
1.5k
Views
fastest method to get potential amplicons based on paired-primers
amplicon
primer
6.1 years ago
J.F.Jiang
• 750
• updated 5.7 years ago
Irsan
♦ 6.9k
2
Votes
3
Replies
1.3k
Views
How to incorporate metadata in 16S amplicon study and identify confounding variables
16S
confounders
amplicon
5.8 years ago
Lina F
• 150
• updated 5.8 years ago
Josh Herr
5.6k
3
Votes
1
Reply
3.5k
Views
How to calculate sequencing depth for 16S amplicon sequencing
sequencing
amplicon
coverage
microbiota
5.9 years ago
sifujio
• 0
• updated 5.9 years ago
mikhail.shugay
3.3k
0
Votes
0
Replies
1.4k
Views
QC for custom Ampliseq panels
ampliseq
qc
amplicon
6.6 years ago
Danielk
• 570
1
Vote
1
Reply
1.3k
Views
Is there a succinct method of isolating sequences phylogenetically similar to a distinct reference clade.
alignment
blast
amplicon
6.7 years ago
Daniel
♦ 3.7k
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