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Showing : adapters • reset
8
Votes
4
Replies
692
Views
mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
RNA-Seq fastqc duplicates adapters
2.7 years ago
salamandra • 200 • updated 21 months ago
Biostar 20
7
Votes
14
Replies
354
Views
6 follow
General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
RNA-Seq trimmomatic trimming adapters
23 months ago
Mozart • 130 • updated 22 months ago
swbarnes2 5.7k
1
Vote
4
Replies
178
Views
Sequencing (+1bp in length?) and adaptor trimming.
RNA-Seq sequencing adapters
23 months ago
Biogeek • 350 • updated 23 months ago
genomax 68k
0
Votes
1
Reply
389
Views
Novaseq 6000 paired end data Trimming and clipping
RNA-Seq novaseq trimming adapters filtering
24 months ago
ignazio.fontana • 0
3
Votes
3
Replies
278
Views
max length in cutadapt
RNA-Seq sequencing adapters
2.1 years ago
max_19 • 100 • updated 2.1 years ago
Devon Ryan 90k
5
Votes
6
Replies
379
Views
Small RNAseq data with untrimmed reads left after trimming process
RNA-Seq smallRNAseq trimming adapters
2.6 years ago
MAPK ♦ 1.4k • updated 2.6 years ago
h.mon 25k
2
Votes
3
Replies
682
Views
Leftover adapter sequences after Trimmomatic trimming?
RNA-Seq trimming Trimmomatic Adapters
2.7 years ago
annsun89 • 20 • updated 2.7 years ago
genomax 68k
8
Votes
14
Replies
1.8k
Views
Which truseq trimmomatic adapters file to use when removing truseq adapters?
adapters trimmomatic RNA-seq
2.7 years ago
salamandra • 200
7
Votes
11
Replies
882
Views
Does adapter removal (with trimmomatic) also remove barcodes?
barcodes adapters RNA-Seq
2.7 years ago
salamandra • 200 • updated 2.7 years ago
swbarnes2 5.7k
3
Votes
6
Replies
612
Views
Remaining adapters ?
RNA-Seq Adapters
3.3 years ago
Sharon • 440 • updated 3.2 years ago
Biostar 20
0
Votes
1
Reply
570
Views
is necessary to remove TruSeq index adapter with low percent and present in one read?
RNA-Seq paired-end adapters quality control
3.4 years ago
Lila M • 470
0
Votes
4
Replies
1.2k
Views
auto trimming of adapter and 6 base normalizing sequence from miRNA reads
microRNA adapters trimming
5.2 years ago
Richard • 550 • updated 3.4 years ago
Biostar 20
2
Votes
8
Replies
885
Views
What is the acceptable percentage of reads with adapters sequenced in miRNA sequencing?
miRNA RNA-Seq smallRNA adapters Reads
3.5 years ago
bioinforesearchquestions • 230
2
Votes
3
Replies
755
Views
Tool For Counting Adapter Dimer: I need metrics NOT trimming
trimming dna adapter dimer adapters primer dimer
3.6 years ago
jnowacki • 70 • updated 3.6 years ago
chen ♦ 1.9k
3
Votes
2
Replies
800
Views
Public datasets with UMI
sequencing adapters UMI
3.8 years ago
ognjen011 • 170
3
Votes
7
Replies
1.1k
Views
FastQC and adapters
sequencing sequence quality adapters
3.8 years ago
ognjen011 • 170 • updated 3.8 years ago
mastal511 ♦ 2.0k
2
Votes
2
Replies
568
Views
What are the adapters in illumina platinium genomes?
Assembly sequencing Adapters
4.0 years ago
dasdevashishdas • 120
1
Vote
2
Replies
870
Views
Custom sequences vs supplied sequences in trimmomatric
adapters trimming trimmomatic
4.1 years ago
ofonov • 0 • updated 4.1 years ago
shunyip • 180
3
Votes
9
Replies
1.4k
Views
How can I remove adapter sequence from illumina 2000 paired end data?
adapters cutadapt trimgalore fastqc illumina PE
4.5 years ago
tcf.hcdg • 60 • updated 4.5 years ago
Brian Bushnell 16k
0
Votes
8
Replies
1.6k
Views
Trimming adapters of Hiseq2000 pair end reads
RNA-Seq adapters
4.7 years ago
Emma • 10 • updated 4.7 years ago
Carlo Yague ♦ 4.5k
6
Votes
6
Replies
6.6k
Views
Where to get list of all Illumina adapters
RNA-Seq cutadapt Illumina adapters
5.1 years ago
umn_bist • 320 • updated 5.1 years ago
Juke-34 ♦ 2.2k
0
Votes
1
Reply
3.5k
Views
Understanding Illumina Adapters
illumina adapters oligos
5.4 years ago
irritable_phd_syndrom • 60 • updated 5.4 years ago
jotan ♦ 1.2k
3
Votes
1
Reply
1.4k
Views
Per base sequence quality before and after truseq adapters removal
illumina truseq adapters removal
5.4 years ago
cristianrohr768 • 30 • updated 5.4 years ago
harold.smith.tarheel ♦ 4.4k
0
Votes
6
Replies
3.7k
Views
Removing barcode and adapters?
sequencing adapters
5.6 years ago
manekineko • 130
2
Votes
2
Replies
4.9k
Views
Illumina adapter identification
illumina RNA-Seq adapters
6.3 years ago
Jonathan Crowther • 180 • updated 6.3 years ago
geek_y 9.7k
9
Votes
2
Replies
2.3k
Views
Mate pair Illumina reads - recommended mapper of choice, adapter removal and PE contamination
mate pair Illumina adapters mapper insert size
6.4 years ago
Biomonika (Noolean) 3.1k • updated 6.4 years ago
14134125465346445 ♦ 3.4k
5
Votes
2
Replies
1.8k
Views
Remove Illumina Adapters
Illumina Adapters Remove Primers
6.8 years ago
K.Nijbroek • 100 • updated 6.8 years ago
Istvan Albert 87k
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