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287 results • Page
1 of 6
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Showing :
WGS
•
reset
3
Votes
4
Replies
161
Views
BWA MEM Definition of a Primary Alignment
alignment
bwa
mem
wgs
hts
20 months ago
QVINTVS_FABIVS_MAXIMVS
♦ 2.2k
• updated 20 months ago
d-cameron
♦ 2.0k
6
Votes
4
Replies
187
Views
Download All The Bacterial Genomes of Pseudomonas aeruginosa From Ncbi
wgs
ngs
bacterial Genomics
21 months ago
Optimist
• 60
• updated 21 months ago
Joe
12k
3
Votes
1
Reply
160
Views
Country wise list of bacterial genome sequences
Bacterial genome
wgs
ngs
21 months ago
Optimist
• 60
• updated 21 months ago
genomax
68k
4
Votes
4
Replies
191
Views
Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
Assembly
SPAdes
Soap-denovo
WGS
bacterial
21 months ago
bioinforesearchquestions
• 230
• updated 21 months ago
h.mon
25k
0
Votes
0
Replies
101
Views
Estimate effect size from region-based variants tests
RVAS
WGS
GWAS
21 months ago
reds.nik
• 40
2
Votes
1
Reply
125
Views
Identify AMR genes from WGS bacterial sequence
WGS
bacteria
AMR
genome assembly
21 months ago
bioinforesearchquestions
• 230
• updated 21 months ago
ctseto
• 70
0
Votes
1
Reply
151
Views
How to get actual location of CNV from CNVKit
cnvkit
cnv
wgs
21 months ago
rabio
• 0
• updated 21 months ago
MatthewP
• 110
0
Votes
0
Replies
136
Views
Why are there multiple bax/fastq files associated with my PacBio run?
PacBio
WGS
genome
sequencing
Forum
21 months ago
nickvpinkham
• 0
• updated 21 months ago
Asaf
5.6k
4
Votes
6
Replies
2.0k
Views
How to call BBMap, SAMTools and GATK from Python or Ruby?
software
sequencing
wgs
5.4 years ago
vassialk
• 190
• updated 21 months ago
Roman Luštrik
• 70
25
Votes
19
Replies
510
Views
9 follow
Getting the number of SNPs in some ranges
R
wgs
CNV
LINUX
22 months ago
F
♦ 3.4k
• updated 22 months ago
RamRS
21k
0
Votes
2
Replies
177
Views
Creating marker file for GICTIC2
GISTIC2
Copy number
Segmentation
WGS
22 months ago
F
♦ 3.4k
• updated 22 months ago
RamRS
21k
2
Votes
3
Replies
183
Views
How to get BLAST wgs database
BLAST
wgs
22 months ago
qwertzio
• 0
• updated 22 months ago
genomax
68k
1
Vote
4
Replies
218
Views
Running time in different callers
mutect
varscan
SNV
WGS
22 months ago
F
♦ 3.4k
2
Votes
5
Replies
246
Views
Creating a PON in GATK
GATK
wgs
mutect2
22 months ago
F
♦ 3.4k
1
Vote
0
Replies
184
Views
Tool:
AllMine, a flexible pipeline for allele mining
snp
RNA-Seq
WGS
pipeline
Tool
22 months ago
thomasbersez
• 30
3
Votes
5
Replies
211
Views
Loss of reads during realignment bam
gatk
bwa
wgs
fastQValidator
samtools
22 months ago
mb2subi
• 0
0
Votes
0
Replies
126
Views
What is the most recommended software to construct a genetic map with SNP markers for a sugarcane cultivar?
sugarcane
WGS
Bi-parental population
22 months ago
giannkas1
• 0
• updated 22 months ago
h.mon
25k
6
Votes
9
Replies
238
Views
How to separate chrY from a WGS vcf file?
tabix
dantelabs
wgs
yfull
bam
22 months ago
krt
• 0
6
Votes
8
Replies
413
Views
Problem with vcf2maf
maf
vcf
wgs
path
22 months ago
F
♦ 3.4k
• updated 22 months ago
RamRS
21k
2
Votes
3
Replies
177
Views
identifying transgene insertion site in WGS
WGS
insertion site
trangene
de-novo
soap
23 months ago
Assa Yeroslaviz
♦ 1.2k
• updated 23 months ago
d-cameron
♦ 2.0k
0
Votes
2
Replies
217
Views
Genotype file supporting gatk CalculateGenotypePosteriors
WGS
GATK
Genotyping
23 months ago
gwotto
• 0
8
Votes
20
Replies
459
Views
Getting read depth for normal and tumour
R
WGS
vcf
23 months ago
F
♦ 3.4k
1
Vote
1
Reply
262
Views
Extracting information from gatk VariantFiltration output
gatk
WGS
23 months ago
F
♦ 3.4k
2
Votes
3
Replies
191
Views
Visualizing called somatic copy number variation
WGS
CNV
23 months ago
F
♦ 3.4k
5
Votes
5
Replies
248
Views
Do you recommend marking duplicates for WGS or WES?
WGS
duplicate
picard
rmdup
NGS
23 months ago
jpuntomarcos
• 30
• updated 23 months ago
Charles Warden
6.8k
4
Votes
6
Replies
218
Views
Non zero existing of scatngs
WGS
software error
scatngs
23 months ago
F
♦ 3.4k
0
Votes
1
Reply
163
Views
Should I use the same reference indexing command of bwa for WGS and WES analysis?
bwa mem
indexing
WGS
WES
23 months ago
maria2019
• 30
• updated 23 months ago
finswimmer
11k
13
Votes
23
Replies
364
Views
How I deal with this big data
WGS
transfer
23 months ago
F
♦ 3.4k
• updated 23 months ago
ATpoint
17k
1
Vote
0
Replies
373
Views
Job:
Bioinformatician NGS Data/Genomics in Berlin
wgs
ngs
genomics
Job
24 months ago
Manuel
• 370
0
Votes
3
Replies
287
Views
Splitting .vcf file
WGS
vcftools
24 months ago
F
♦ 3.4k
0
Votes
6
Replies
332
Views
How to access specifically 30x NA12878 sequencing runs
giab
benchmark
fastq
wgs
data-access
24 months ago
Fungsten
• 0
• updated 24 months ago
Pierre Lindenbaum
120k
0
Votes
9
Replies
336
Views
Removing or not removing the duplicates in .bam file
picard
GATK
RNA-Seq
WGS
24 months ago
F
♦ 3.4k
4
Votes
13
Replies
344
Views
Variant calling from RNA-seq?
WGS
RNA-Seq
2.0 years ago
F
♦ 3.4k
12
Votes
20
Replies
411
Views
Getting these files from different parts of genome
BED
WGS
genome
SNP
R
2.0 years ago
F
♦ 3.4k
19
Votes
22
Replies
495
Views
Removing duplicated mutations from a txt
WGS
VCF
mutation
dndscv
2.0 years ago
F
♦ 3.4k
• updated 2.0 years ago
zx8754
7.5k
4
Votes
14
Replies
370
Views
VCF file filtration
snp
WGS
VCF
bcftools
vcftools
2.0 years ago
jaafari.omid
• 40
0
Votes
0
Replies
198
Views
Whole genome amplification+Nanopore of cell line
wgs
amplification
phi29
nanopore
genome
2.0 years ago
jacke123
• 0
2
Votes
1
Reply
226
Views
Has anyone used MeDuSa: a multi-draft based scaffolder
wgs
Bacterial genomics
ngs
medusa
2.0 years ago
Optimist
• 60
• updated 2.0 years ago
h.mon
25k
2
Votes
3
Replies
231
Views
Is there a way to segregate Plasmid contigs from Iontorrent WGS data?
Assembly
Plasmid
WGS
Ion torrent
2.0 years ago
Optimist
• 60
• updated 2.0 years ago
5heikki
8.4k
16
Votes
24
Replies
617
Views
dNdScv error: Zero coding substitutions found in this dataset
dndscv
R
WGS
2.1 years ago
F
♦ 3.4k
• updated 2.1 years ago
Inigo Martincorena
• 170
11
Votes
13
Replies
367
Views
Extracting this data frame from a .vcf file
WGS
R
VCF
2.1 years ago
F
♦ 3.4k
0
Votes
9
Replies
200
Views
Starting with whole genome sequencing data
WGS
sequencing
2.1 years ago
F
♦ 3.4k
2
Votes
6
Replies
996
Views
Calling SNPs using bcftools mpileup
snp
genome
bcftools-mpileup
WGS
SNP calling
2.1 years ago
jaafari.omid
• 40
• updated 2.1 years ago
finswimmer
11k
2
Votes
3
Replies
1.6k
Views
Any tools to predict non-coding driver mutations
WGS
6.3 years ago
Ming Tang
♦ 2.5k
• updated 2.1 years ago
Biostar
20
7
Votes
4
Replies
307
Views
Best way of Merging Multiple Lanes generated by HiSeq 2000, index BAM or VCF?
wgs
illumina
HiSeq
SAM
Mapping
2.2 years ago
venuraherath
• 20
1
Vote
1
Reply
1.3k
Views
What are the best tools/practices for CNV (structural variation) detection/analysis for Illumina family data?
cnv
sv
snp array
wes
wgs
3.7 years ago
Irina Astrovskaya
• 20
• updated 2.2 years ago
h.mon
25k
1
Vote
5
Replies
298
Views
bcftool (mpileup, call) extremely slow on 60 BAMs (WGS 20x)
bcftools
samtools
mpileup
WGS
snp
2.2 years ago
serpalma.v
• 20
2
Votes
6
Replies
363
Views
Extract sequences from the raw reads
WGS
next-gen
2.3 years ago
Jusnib
• 0
• updated 2.2 years ago
Biostar
20
1
Vote
1
Reply
381
Views
Finding/Generating Example WGS Data With Transgene
wgs
transgene
insert
example
data
2.3 years ago
sallehl
• 0
• updated 2.2 years ago
Biostar
20
0
Votes
1
Reply
381
Views
Is it possible to multiplex mora than 384 samples on Novaseq 6000 for a very low pass (0.5-10x) WGS?
WGS
Novaseq
2.3 years ago
Biomed
4.5k
287 results • Page
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