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Showing : WES • reset
0
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72
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Job: London LIDo PhD studentship
4 months ago dxia • 0
0
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1
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326
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TCGA TMB: What exome size to use?
7 months ago ngs_engineer • 0 • updated 4 months ago bastien.nguyen • 0
3
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13
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199
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VarScan warning and exit after Invalid format for pileup at line 1
5 months ago n.tear • 0 • updated 4 months ago Biostar 20
0
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2
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1.1k
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converting varscan2 output to sequenza
2.2 years ago a01039012387 • 10 • updated 4 months ago brunobsouzaa • 10
2
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3
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140
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EXCAVATOR shows 1 deletion which is not TRUE in IGV
5 months ago lait • 130
2
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4
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147
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bionano hybrid scaffold
5 months ago lait • 130 • updated 5 months ago WouterDeCoster 39k
2
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1
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168
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Mutect2 "somatic" variants with resistant tissue culture lines
6 months ago shawn.w.foley • 670 • updated 5 months ago Biostar 20
2
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2
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258
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CNVkit for somatic copy number detection
5 months ago stephaniem • 0
0
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0
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78
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Tools to access variation of ploidy at certain genomic loci using WES
5 months ago Rahul Sharma • 580
0
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2
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132
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Can CVNkit call CNV correctly at HLA genes region?
6 months ago MatthewP • 110 • updated 6 months ago linouhao • 0
3
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2
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137
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Post-filtering WES for mutation calling
6 months ago graeme.thorn • 40
0
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0
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123
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How can I check my title of reads added by BWA mem -R?
6 months ago Laven9 • 0
3
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4
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524
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Downstream analysis of VCF files obtained from VarScan2
10 months ago Raheleh • 70 • updated 6 months ago bari.ballew • 90
8
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4
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253
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tool to detect large deletions
6 months ago lait • 130 • updated 6 months ago bari.ballew • 90
0
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1
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1.3k
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Annovar - Mouse Exome Sequencing
2.4 years ago cbatist • 0 • updated 6 months ago Kevin Blighe 43k
6
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1
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1.6k
Views
Gold Standard for Human cancer exome sequencing
3.0 years ago Jerome Lin • 20 • updated 6 months ago Biostar 20
7
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4
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166
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Can you use germline variation calling on a normal embryonic stem cell line?
6 months ago maria2019 • 30 • updated 6 months ago Emily_Ensembl 18k
0
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6
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177
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why does qualimap2 shows different results for number of mismatches for bowtie2 and BWAMEM?
6 months ago maria2019 • 30 • updated 6 months ago h.mon 25k
0
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1
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118
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Should I use the same reference indexing command of bwa for WGS and WES analysis?
6 months ago maria2019 • 30 • updated 6 months ago finswimmer 11k
0
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1
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140
Views
How many SNPs I should expect to see in a normal human embryonic stem cell (hESC) with WES analysis?
6 months ago maria2019 • 30
1
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4
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542
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What is the right illumina universal adapter sequence for trimming paired-end reads?
6 months ago maria2019 • 30 • updated 6 months ago Vijay Lakhujani 4.1k
3
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2
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161
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Does strange fastQC GC content report cause a problem for WES analysis?
6 months ago maria2019 • 30 • updated 6 months ago JC 7.9k
2
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5
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147
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Should I specify exome region to do the QC with qualimap2 for WES analysis?
6 months ago maria2019 • 30 • updated 6 months ago h.mon 25k
3
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10
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316
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How can I split WES FASTQ file into sub-files for each chromosome ?
7 months ago Laven9 • 0
0
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5
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207
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Off topic: Error when split WES data into sub-files
7 months ago Laven9 • 0
1
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0
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157
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putative mosaic mutations
7 months ago lait • 130
3
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3
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225
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Off topic: Merge selective vcf files into one vcf file using a single command
8 months ago jaybee • 10 • updated 8 months ago Pierre Lindenbaum 120k
1
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2
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195
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Incorrect number of AD fields (2) at 1:878906 cannot merge
8 months ago jaybee • 10
1
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1
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1.2k
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What are the best tools/practices for CNV (structural variation) detection/analysis for Illumina family data?
2.4 years ago Irina Astrovskaya • 20 • updated 10 months ago h.mon 25k
4
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6
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638
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Appropriate bed files from library capture kit for computing on target coverage of WES bam files with Picard and CollectHsMetrics
10 months ago svlachavas • 560 • updated 10 months ago finswimmer 11k
1
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6
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895
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Converting TCGA Bam files to fastq: Picard does not work!
2.2 years ago jonessara770 • 150 • updated 11 months ago rmh1995 • 0
0
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0
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287
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Qs about mutect2
12 months ago walker • 20
0
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3
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237
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Enrichment platforms for 1000GP exome data
12 months ago kuckunniwid • 40
3
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6
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733
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CNV calling from exome sequencing data with a low number of samples
12 months ago KumaraFM • 0 • updated 12 months ago toralmanvar • 760
1
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3
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1.6k
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SciClone on WES data
2.4 years ago mar.ark.parr • 30 • updated 12 months ago aliz0611 • 0
15
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8
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1.7k
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Whole exome sequencing data, rare variants and QQ-plots
3.4 years ago felejohs • 70 • updated 12 months ago zx8754 7.5k
1
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1
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353
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my bam file contains both single-end and paired-end. How can I convert bam to fastq so that fastq contains only paired-end reads?
13 months ago jonessara770 • 150 • updated 13 months ago Pierre Lindenbaum 120k
0
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3
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371
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differences in covered regions in exome and whole genome sequencing
15 months ago miaowzai • 130 • updated 13 months ago Biostar 20
0
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1
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387
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Database of Mutations and the associated drugs
14 months ago Ron • 950 • updated 14 months ago Kevin Blighe 43k
0
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1
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376
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CNV analysis from exome sequencing data
14 months ago mkamranazim • 0
112 results • Page 1 of 3
Recent Votes
Markdown
Comment: Markdown
New test post with the AJAX system
Answer: Markdown
Markdown
A: Which Are The Best Programming Languages For A Bioinformatician?
A: Which Are The Best Programming Languages For A Bioinformatician?
Answer: Which Are The Best Programming Languages For A Bioinformatician?
how do I run this recipe
C: How to apply vcftools --diff to identify vcf-specific variants/records
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Recent Awards • All
Appreciated to finswimmer 11k
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Appreciated to finswimmer 11k
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Autobiographer to lilyjacob987 • 0
Autobiographer to kapoormalvika912 • 0
Recent Replies
Comment: " testing dfg " by RamRS 21k
Testing highlighting functionality. Using `<span style="background-color: #FFFF00">`: <span style="background-color: #FFFF00">Span trial</…
Comment: " testing dfg " by RamRS 21k
Testing <u>underline</u> functionality.
Answer: Which Are The Best Programming Languages For A Bioinformatician? by Anna • 0
I could recommend you this research - https://www.romexsoft.com/blog/aws-hipaa-compliance-best-practices-checklist/
Comment: " testing dfg " by RamRS 21k
Testing comment with parentheses in URL: (this URL: https://www.ncbi.nlm.nih.gov/search/all/?term=BRCA1%20AND%20(Human%20OR%20Mouse))
Comment: get gene biotype for hg38 refseq by Natay Aberra 0
test the bumping
Comment: get gene biotype for hg38 refseq by genomax 68k
http://test.biostars.org/accounts/profile/2/ http://test.biostars.org/p/34/
Comment: New test post with the AJAX system by Natay Aberra 0
Yeah we will probably end up doing that.
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/accounts/profile/18713/ http://test.biostars.org/p/p371267/#p371295 test the bumping
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/p/p371285/ http://test.biostars.org/accounts/profile/user-2/
Comment: New test post with the AJAX system by genomax 68k
Checking to see if this comment bumps the thread to top.
Comment: Markdown by genomax 68k
http://test.biostars.org/p/p371285/
Comment: Markdown by genomax 68k
@nba5048: Why is the original post showing up in separate sections? No way to use old style reference to users: http://test.biostars.org/a…
Comment: Markdown by Natay Aberra 0
Check your biostar messages, You did get a notification.
Comment: Markdown by ATpoint 17k
Test image: ![enter image description here][1] [1]: http://oi66.tinypic.com/33kdnjt.jpg
Comment: Markdown by ATpoint 17k
Nope, no notification.
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