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Showing : WES • reset
0
Votes
1
Reply
378
Views
TCGA TMB: What exome size to use?
WES
17 months ago
ngs_engineer • 0 • updated 14 months ago
bastien.nguyen • 0
3
Votes
13
Replies
253
Views
VarScan warning and exit after Invalid format for pileup at line 1
WES software error variant calling
15 months ago
n.tear • 0 • updated 14 months ago
Biostar 20
0
Votes
2
Replies
1.1k
Views
converting varscan2 output to sequenza
exome WES mutation SNP
2.9 years ago
a01039012387 • 10 • updated 14 months ago
brunobsouzaa • 10
2
Votes
3
Replies
182
Views
EXCAVATOR shows 1 deletion which is not TRUE in IGV
excavator igv wes exome cnv
14 months ago
lait • 130
2
Votes
4
Replies
187
Views
bionano hybrid scaffold
WES bionano optical mapping illumina
15 months ago
lait • 130 • updated 15 months ago
WouterDeCoster 39k
2
Votes
1
Reply
203
Views
Mutect2 "somatic" variants with resistant tissue culture lines
mutect2 wes variants genotyping GATK
16 months ago
shawn.w.foley • 670 • updated 15 months ago
Biostar 20
2
Votes
2
Replies
314
Views
CNVkit for somatic copy number detection
cnv cnvkit exome WES
15 months ago
stephaniem • 0
0
Votes
0
Replies
107
Views
Tools to access variation of ploidy at certain genomic loci using WES
WES Ploidy Endomitosis
15 months ago
Rahul Sharma • 580
0
Votes
2
Replies
165
Views
Can CVNkit call CNV correctly at HLA genes region?
CNVKIT wes HLA
15 months ago
MatthewP • 110 • updated 15 months ago
linouhao • 0
3
Votes
2
Replies
171
Views
Post-filtering WES for mutation calling
mutect2 wxs wes
15 months ago
graeme.thorn • 40
0
Votes
0
Replies
165
Views
How can I check my title of reads added by BWA mem -R?
WES BWA
16 months ago
Laven9 • 0
3
Votes
4
Replies
567
Views
Downstream analysis of VCF files obtained from VarScan2
WES VCF Somatic variations VarScan2 SnpEff
20 months ago
Raheleh • 70 • updated 16 months ago
bari.ballew • 90
8
Votes
4
Replies
298
Views
tool to detect large deletions
deletions IGV wes
16 months ago
lait • 130 • updated 16 months ago
bari.ballew • 90
0
Votes
1
Reply
1.3k
Views
Annovar - Mouse Exome Sequencing
annovar wes whole-exome sequencing mouse
3.2 years ago
cbatist • 0 • updated 16 months ago
Kevin Blighe 43k
6
Votes
1
Reply
1.6k
Views
Gold Standard for Human cancer exome sequencing
WES Somatic MuTect VarScan Cancer
3.8 years ago
Jerome Lin • 20 • updated 16 months ago
Biostar 20
7
Votes
4
Replies
198
Views
Can you use germline variation calling on a normal embryonic stem cell line?
SNP WES embryonic cell germline variation GATK
16 months ago
maria2019 • 30 • updated 16 months ago
Emily_Ensembl 18k
0
Votes
6
Replies
220
Views
why does qualimap2 shows different results for number of mismatches for bowtie2 and BWAMEM?
WES qualimap bowtie2 bwamem
16 months ago
maria2019 • 30 • updated 16 months ago
h.mon 25k
0
Votes
1
Reply
163
Views
Should I use the same reference indexing command of bwa for WGS and WES analysis?
bwa mem indexing WGS WES
16 months ago
maria2019 • 30 • updated 16 months ago
finswimmer 11k
0
Votes
1
Reply
174
Views
How many SNPs I should expect to see in a normal human embryonic stem cell (hESC) with WES analysis?
SNP hESC WES samtools
16 months ago
maria2019 • 30
1
Vote
4
Replies
578
Views
What is the right illumina universal adapter sequence for trimming paired-end reads?
WES fastqc trimadaptor
16 months ago
maria2019 • 30 • updated 16 months ago
Vijay Lakhujani 4.1k
3
Votes
2
Replies
199
Views
Does strange fastQC GC content report cause a problem for WES analysis?
fastQC WES GC content
16 months ago
maria2019 • 30 • updated 16 months ago
JC 7.9k
2
Votes
5
Replies
198
Views
Should I specify exome region to do the QC with qualimap2 for WES analysis?
qualimap2 WES QC
16 months ago
maria2019 • 30 • updated 16 months ago
h.mon 25k
3
Votes
10
Replies
368
Views
How can I split WES FASTQ file into sub-files for each chromosome ?
WES split fastq chromosome
16 months ago
Laven9 • 0
1
Vote
0
Replies
189
Views
putative mosaic mutations
mosaic de novo wes sequencing
17 months ago
lait • 130
1
Vote
2
Replies
235
Views
Incorrect number of AD fields (2) at 1:878906 cannot merge
bcftools vcf WES
17 months ago
jaybee • 10
1
Vote
1
Reply
1.3k
Views
What are the best tools/practices for CNV (structural variation) detection/analysis for Illumina family data?
cnv sv snp array wes wgs
3.1 years ago
Irina Astrovskaya • 20 • updated 19 months ago
h.mon 25k
4
Votes
6
Replies
714
Views
Appropriate bed files from library capture kit for computing on target coverage of WES bam files with Picard and CollectHsMetrics
Picard WES bam files on target coverage NGS
20 months ago
svlachavas • 560 • updated 19 months ago
finswimmer 11k
1
Vote
6
Replies
925
Views
Converting TCGA Bam files to fastq: Picard does not work!
wes sequencing
3.0 years ago
jonessara770 • 150 • updated 21 months ago
rmh1995 • 0
0
Votes
0
Replies
316
Views
Qs about mutect2
WES mutect2 gatk
21 months ago
walker • 20
0
Votes
3
Replies
271
Views
Enrichment platforms for 1000GP exome data
data WES
22 months ago
kuckunniwid • 40
3
Votes
6
Replies
772
Views
CNV calling from exome sequencing data with a low number of samples
WES CNV exome copy-number variant
22 months ago
KumaraFM • 0 • updated 22 months ago
toralmanvar • 760
1
Vote
3
Replies
1.6k
Views
SciClone on WES data
sciclone wes clonality varscan dnacopy
3.2 years ago
mar.ark.parr • 30 • updated 22 months ago
aliz0611 • 0
15
Votes
8
Replies
1.8k
Views
Whole exome sequencing data, rare variants and QQ-plots
QQ-plot whole exome sequencing WES
4.2 years ago
felejohs • 70 • updated 22 months ago
zx8754 7.5k
1
Vote
1
Reply
372
Views
my bam file contains both single-end and paired-end. How can I convert bam to fastq so that fastq contains only paired-end reads?
WES
23 months ago
jonessara770 • 150 • updated 23 months ago
Pierre Lindenbaum 120k
0
Votes
3
Replies
401
Views
differences in covered regions in exome and whole genome sequencing
exome-sequencing WES genome-sequencing WGS
2.0 years ago
miaowzai • 130 • updated 23 months ago
Biostar 20
0
Votes
1
Reply
413
Views
Database of Mutations and the associated drugs
WES ngs
23 months ago
Ron • 950 • updated 23 months ago
Kevin Blighe 43k
0
Votes
1
Reply
403
Views
CNV analysis from exome sequencing data
cnv wes
2.0 years ago
mkamranazim • 0
1
Vote
1
Reply
319
Views
Haplotype sharing of mutation carriers
ngs haplotype SNP WES
2.0 years ago
Lio04 • 0 • updated 2.0 years ago
Kevin Blighe 43k
1
Vote
3
Replies
373
Views
interpretation of intronic variant detected by WES
WES
2.0 years ago
jonessara770 • 150
0
Votes
1
Reply
254
Views
How to remove Variants where the Ref and Alt in the reference genome are switched?
NGS WES VariantCalling RefAlt
2.0 years ago
O.ibra • 0 • updated 2.0 years ago
Pierre Lindenbaum 120k
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