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487 results • Page
1 of 10
Sort by: Rank
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Showing :
UCSC
•
reset
1
Vote
8
Replies
183
Views
UCSC different exome sets per each gene
ucsc
exomes
gene
coordinates
20 months ago
cocchi.e89
• 20
• updated 20 months ago
Luis Nassar
• 110
2
Votes
5
Replies
156
Views
Protein coding annotation from UCSC
ucsc
annotation
20 months ago
tim.ivanov.92
• 10
• updated 20 months ago
Luis Nassar
• 110
3
Votes
3
Replies
155
Views
How to get known canonical transcript information from UCSC for a specific gencode version
gencode
ucsc
canonical transcripts
20 months ago
komal.rathi
♦ 3.4k
2
Votes
4
Replies
152
Views
find transcription factor binding site with small sequence from UCSC
ucsc
bindingsite
motif
20 months ago
kdc15
• 30
• updated 20 months ago
geek_y
9.7k
6
Votes
5
Replies
224
Views
How to zoom out to whole genome view in UCSC browser?
UCSC
browser
bigWig
20 months ago
msimmer92
• 180
29
Votes
8
Replies
11k
Views
Get chromosome sizes from fasta file
genome
ucsc
5.0 years ago
rioualen
• 360
• updated 21 months ago
gbdias
• 80
2
Votes
1
Reply
173
Views
how to get gff file bos tau8 from ucsc to import in usegalaxy
ucsc
usegalaxy
gff
htseq-count
21 months ago
Kian
• 40
4
Votes
8
Replies
238
Views
RefGene: how to find the starts and ends of genes?
refgene
ucsc
22 months ago
endrebak
• 760
• updated 21 months ago
Luis Nassar
• 110
6
Votes
10
Replies
418
Views
Why the list of genes in UCSC "knownGene" table is strikingly different than the list of genes in UCSC "known canonical" table?
ucsc
tablebrowser
hg19
bed
22 months ago
Vijay Lakhujani
4.1k
1
Vote
2
Replies
216
Views
manually turn off multiple tracks at once in UCSC browser
ucsc
24 months ago
fraser518
• 0
• updated 23 months ago
Luis Nassar
• 110
0
Votes
3
Replies
269
Views
Count matrix showing different results than UCSC tracks
ucsc
featurecounts
bigwig
bam
mm10
23 months ago
raquelgarza95
• 40
0
Votes
0
Replies
285
Views
Job:
Software Engineer, UCSC Genomics Institute
engineer
ucsc
genomics
software
Job
23 months ago
genomicshr
• 10
1
Vote
2
Replies
270
Views
Job:
Senior Software Engineer
software
engineer
ucsc
genomics
Job
23 months ago
genomicshr
• 10
• updated 23 months ago
RamRS
21k
0
Votes
0
Replies
302
Views
Job:
UCSC ISO DevOps Engineer for Computational Genomics Platform!
engineer
ucsc
genomics
DevOps
Job
2.0 years ago
genomicshr
• 10
1
Vote
6
Replies
289
Views
Find the 3' utrs, 5'utrs and their counts from bam files
bam
bed
ucsc
bedtools
utr
2.0 years ago
ilovesuperheroes1993
• 0
• updated 2.0 years ago
Gautier Richard
• 280
2
Votes
1
Reply
242
Views
bigWigSummary with bed file for a specific amount of datapoints in output
UCSC
bigwig bed
summary
average
mean
2.0 years ago
newscient
• 20
• updated 2.0 years ago
Devon Ryan
90k
1
Vote
4
Replies
439
Views
Convert MAF to FASTA
alignment
soft
ucsc
2.1 years ago
tim.ivanov.92
• 10
• updated 2.1 years ago
kloetzl
♦ 1.0k
4
Votes
2
Replies
368
Views
Full genome phyloP scores from UCSC Browser
ucsc
database
2.1 years ago
cetin.m
• 30
• updated 2.1 years ago
cmdcolin
♦ 1.2k
1
Vote
2
Replies
243
Views
Where should I go to download human SNP reference data ? hg18_unmasked.plusContam.fa
SNP
next-gen
UCSC
genome
2.1 years ago
Ashley
• 50
• updated 2.1 years ago
ATpoint
17k
4
Votes
9
Replies
393
Views
MAF format help
ucsc
mafFrags
2.2 years ago
tim.ivanov.92
• 10
2
Votes
5
Replies
343
Views
Can i use ucsc track browser without a reference organism?
ucsc
aln
clustalw
annotation
2.3 years ago
tim.ivanov.92
• 10
• updated 2.2 years ago
Biostar
20
2
Votes
1
Reply
354
Views
mm10 phyloP download for custom tracks
phyloP
conservation
UCSC
2.2 years ago
rbronste
• 240
• updated 2.2 years ago
Biostar
20
47
Votes
16
Replies
19k
Views
8 follow
Get rs number based on position
ucsc
mysql
snp
9.6 years ago
Zach Stednick
• 650
• updated 2.2 years ago
zx8754
7.5k
64
Votes
12
Replies
26k
Views
8 follow
How Can I Get The Human Chromosome Centromere Position And Chromosome Length In Grch37/Hg19
position
ucsc
10.4 years ago
Jdk
• 220
• updated 2.2 years ago
Shixiang
• 40
1
Vote
2
Replies
391
Views
Reformating bedGraph files in shell script
bedGraph
bigWig
ucsc
chr
awk
2.4 years ago
m93
• 150
• updated 2.2 years ago
Biostar
20
0
Votes
0
Replies
332
Views
Job:
UCSC Genomics Institute seeking External Collaborations Project Manager!
project management
genomics
UCSC
collaboration
Job
2.2 years ago
genomicshr
• 10
13
Votes
5
Replies
693
Views
How do I get a list of all species with a fasta genome in UCSC?
UCSC
3.5 years ago
endrebak
• 760
• updated 2.3 years ago
Biostar
20
2
Votes
4
Replies
1.4k
Views
doubts about genome assembly and ensembl
Assembly
SNP
Ensembl
UCSC
Genome Browser
6.0 years ago
palliyath91
• 0
• updated 2.3 years ago
Biostar
20
5
Votes
6
Replies
8.6k
Views
Where Can I Get Annovar 'Refgene' Format?
annovar
ucsc
8.9 years ago
jessada
• 100
• updated 2.3 years ago
lffu_0032
• 30
0
Votes
8
Replies
350
Views
UCSC itemRgb on column 9
ucsc
itemRgb
2.3 years ago
varsha619
• 80
0
Votes
6
Replies
1.6k
Views
Duplicate gene symbols converted from UCSC gene id
RNA-Seq
gene expression
cufflinks
ucsc
4.9 years ago
gndy90
• 0
• updated 2.3 years ago
RamRS
21k
0
Votes
2
Replies
1.2k
Views
Problem starting and running Gmaj (MAF file viewer and manipulator)
Gmaj
JRE
Java
MAF
UCSC
4.9 years ago
Thomas Bradley
• 90
• updated 2.3 years ago
RamRS
21k
2
Votes
3
Replies
1.6k
Views
How can get MAF for set of SNPs from each population based on 1000 Genome?
R
1000 Genome
hapmap
ucsc
Ensembl
4.9 years ago
star
• 150
• updated 2.3 years ago
zx8754
7.5k
1
Vote
4
Replies
270
Views
Force Not to Ignore Repeats in UCSC Table Browser
ucsc
2.3 years ago
mgru
• 10
0
Votes
0
Replies
346
Views
UCSC hub: autoscale option for multiwig track
ucsc
multiWig
track
autoscale
2.3 years ago
m93
• 150
3
Votes
2
Replies
358
Views
variableStep vs fixedStep for range formats
ucsc
formats
bigwig
bedgraph
range
2.4 years ago
m93
• 150
• updated 2.4 years ago
RamRS
21k
2
Votes
1
Reply
993
Views
Mapability index (track) from UCSC
UCSC
mapability
4.9 years ago
nbhardwaj
• 130
• updated 2.4 years ago
RamRS
21k
1
Vote
3
Replies
587
Views
the expression of miRNA in ucsc genome browser
gene
ucsc
expression
cancer
miRNA
2.6 years ago
yueli7
• 40
• updated 2.4 years ago
mary
• 20
0
Votes
1
Reply
378
Views
Error displaying GTEX like boxplot in UCSC Genome Browser - "Error creating boxplot from sample data"
ucsc
genomebrowser
boxplot
GTEx Barcharts
2.4 years ago
ApoorvaB
• 210
5
Votes
8
Replies
582
Views
Output bedGraph from genomeCoverageBed is missing "chr"
RNA-Seq
ucsc
genomeCoverageBed
bedGraph
bigWig
2.4 years ago
m93
• 150
• updated 2.4 years ago
RamRS
21k
12
Votes
5
Replies
6.9k
Views
Getting Genomic Sequences And Phastcons Scores Using Python From Ensembl/Ucsc?
python
biopython
ucsc
ensembl
sequence
10.6 years ago
User 9996
• 800
• updated 2.4 years ago
RamRS
21k
2
Votes
5
Replies
1.6k
Views
Bookmarklet To Open User Ucsc Genome Browser For Specific Chromosomal Location
ucsc
genome
10.6 years ago
D W
• 150
• updated 2.4 years ago
RamRS
21k
5
Votes
7
Replies
1.5k
Views
Length(Ucsc/Ensgene) % 3 != 0
ucsc
cdna
protein
sequence
translation
10.7 years ago
Pierre Lindenbaum
120k
• updated 2.4 years ago
RamRS
21k
20
Votes
7
Replies
12k
Views
How Do I Get The Gene Names From The Chromosome Locations In A Wig File
wiggle
ucsc
coordinates
galaxy
10.7 years ago
pixie@bioinfo
♦ 1.4k
• updated 2.4 years ago
RamRS
21k
5
Votes
3
Replies
762
Views
How to get raw Github URL for a large file
ucsc
url
github
2.4 years ago
m93
• 150
• updated 2.4 years ago
jared.andrews07
♦ 2.4k
5
Votes
1
Reply
552
Views
Converting narrowpeak files to make it compatible with UCSC trackhub
ucsc
genomebrowser
narrowpeakfile
ucscutilites
2.4 years ago
ApoorvaB
• 210
1
Vote
3
Replies
1.4k
Views
Retrieve Information From Ucsc Genome Browser ?
cnv
ucsc
next-gen
sequencing
9.2 years ago
khikho
• 100
• updated 2.4 years ago
Biostar
20
0
Votes
0
Replies
515
Views
Job:
Software Engineer, Computational Genomics Lab/ Platform, University of California Santa Cruz, Santa Cruz, CA, USA
UCSC
software engineer
genomics
Job
2.4 years ago
genomicshr
• 10
• updated 2.4 years ago
genomax
68k
0
Votes
0
Replies
508
Views
Job:
Junior Software Engineer, Computational Genomics Lab/ Platform (UCSC)
software engineer
ucsc
genomics
Job
2.4 years ago
genomicshr
• 10
• updated 2.4 years ago
Devon Ryan
90k
0
Votes
1
Reply
487
Views
Job:
Senior Software Engineer, Computational Genomics Lab/ Platform (UCSC)
genomics
software engineer
ucsc
Job
2.4 years ago
genomicshr
• 10
• updated 2.4 years ago
Devon Ryan
90k
487 results • Page
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