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Showing : UCSC • reset
1
Vote
8
Replies
183
Views
UCSC different exome sets per each gene
ucsc exomes gene coordinates
20 months ago
cocchi.e89 • 20 • updated 20 months ago
Luis Nassar • 110
2
Votes
5
Replies
156
Views
Protein coding annotation from UCSC
ucsc annotation
20 months ago
tim.ivanov.92 • 10 • updated 20 months ago
Luis Nassar • 110
3
Votes
3
Replies
155
Views
How to get known canonical transcript information from UCSC for a specific gencode version
gencode ucsc canonical transcripts
20 months ago
komal.rathi ♦ 3.4k
2
Votes
4
Replies
152
Views
find transcription factor binding site with small sequence from UCSC
ucsc bindingsite motif
20 months ago
kdc15 • 30 • updated 20 months ago
geek_y 9.7k
6
Votes
5
Replies
224
Views
How to zoom out to whole genome view in UCSC browser?
UCSC browser bigWig
20 months ago
msimmer92 • 180
29
Votes
8
Replies
11k
Views
Get chromosome sizes from fasta file
genome ucsc
5.0 years ago
rioualen • 360 • updated 21 months ago
gbdias • 80
2
Votes
1
Reply
173
Views
how to get gff file bos tau8 from ucsc to import in usegalaxy
ucsc usegalaxy gff htseq-count
21 months ago
Kian • 40
4
Votes
8
Replies
238
Views
RefGene: how to find the starts and ends of genes?
refgene ucsc
22 months ago
endrebak • 760 • updated 21 months ago
Luis Nassar • 110
6
Votes
10
Replies
418
Views
Why the list of genes in UCSC "knownGene" table is strikingly different than the list of genes in UCSC "known canonical" table?
ucsc tablebrowser hg19 bed
22 months ago
Vijay Lakhujani 4.1k
1
Vote
2
Replies
216
Views
manually turn off multiple tracks at once in UCSC browser
ucsc
24 months ago
fraser518 • 0 • updated 23 months ago
Luis Nassar • 110
0
Votes
3
Replies
269
Views
Count matrix showing different results than UCSC tracks
ucsc featurecounts bigwig bam mm10
23 months ago
raquelgarza95 • 40
0
Votes
0
Replies
285
Views
Job: Software Engineer, UCSC Genomics Institute
engineer ucsc genomics software Job
23 months ago
genomicshr • 10
1
Vote
2
Replies
270
Views
Job: Senior Software Engineer
software engineer ucsc genomics Job
23 months ago
genomicshr • 10 • updated 23 months ago
RamRS 21k
0
Votes
0
Replies
302
Views
Job: UCSC ISO DevOps Engineer for Computational Genomics Platform!
engineer ucsc genomics DevOps Job
2.0 years ago
genomicshr • 10
1
Vote
6
Replies
289
Views
Find the 3' utrs, 5'utrs and their counts from bam files
bam bed ucsc bedtools utr
2.0 years ago
ilovesuperheroes1993 • 0 • updated 2.0 years ago
Gautier Richard • 280
2
Votes
1
Reply
242
Views
bigWigSummary with bed file for a specific amount of datapoints in output
UCSC bigwig bed summary average mean
2.0 years ago
newscient • 20 • updated 2.0 years ago
Devon Ryan 90k
1
Vote
4
Replies
439
Views
Convert MAF to FASTA
alignment soft ucsc
2.1 years ago
tim.ivanov.92 • 10 • updated 2.1 years ago
kloetzl ♦ 1.0k
4
Votes
2
Replies
368
Views
Full genome phyloP scores from UCSC Browser
ucsc database
2.1 years ago
cetin.m • 30 • updated 2.1 years ago
cmdcolin ♦ 1.2k
1
Vote
2
Replies
243
Views
Where should I go to download human SNP reference data ? hg18_unmasked.plusContam.fa
SNP next-gen UCSC genome
2.1 years ago
Ashley • 50 • updated 2.1 years ago
ATpoint 17k
4
Votes
9
Replies
393
Views
MAF format help
ucsc mafFrags
2.2 years ago
tim.ivanov.92 • 10
2
Votes
5
Replies
343
Views
Can i use ucsc track browser without a reference organism?
ucsc aln clustalw annotation
2.3 years ago
tim.ivanov.92 • 10 • updated 2.2 years ago
Biostar 20
2
Votes
1
Reply
354
Views
mm10 phyloP download for custom tracks
phyloP conservation UCSC
2.2 years ago
rbronste • 240 • updated 2.2 years ago
Biostar 20
47
Votes
16
Replies
19k
Views
8 follow
Get rs number based on position
ucsc mysql snp
9.6 years ago
Zach Stednick • 650 • updated 2.2 years ago
zx8754 7.5k
64
Votes
12
Replies
26k
Views
8 follow
How Can I Get The Human Chromosome Centromere Position And Chromosome Length In Grch37/Hg19
position ucsc
10.4 years ago
Jdk • 220 • updated 2.2 years ago
Shixiang • 40
1
Vote
2
Replies
391
Views
Reformating bedGraph files in shell script
bedGraph bigWig ucsc chr awk
2.4 years ago
m93 • 150 • updated 2.2 years ago
Biostar 20
0
Votes
0
Replies
332
Views
Job: UCSC Genomics Institute seeking External Collaborations Project Manager!
project management genomics UCSC collaboration Job
2.2 years ago
genomicshr • 10
13
Votes
5
Replies
693
Views
How do I get a list of all species with a fasta genome in UCSC?
UCSC
3.5 years ago
endrebak • 760 • updated 2.3 years ago
Biostar 20
2
Votes
4
Replies
1.4k
Views
doubts about genome assembly and ensembl
Assembly SNP Ensembl UCSC Genome Browser
6.0 years ago
palliyath91 • 0 • updated 2.3 years ago
Biostar 20
5
Votes
6
Replies
8.6k
Views
Where Can I Get Annovar 'Refgene' Format?
annovar ucsc
8.9 years ago
jessada • 100 • updated 2.3 years ago
lffu_0032 • 30
0
Votes
8
Replies
350
Views
UCSC itemRgb on column 9
ucsc itemRgb
2.3 years ago
varsha619 • 80
0
Votes
6
Replies
1.6k
Views
Duplicate gene symbols converted from UCSC gene id
RNA-Seq gene expression cufflinks ucsc
4.9 years ago
gndy90 • 0 • updated 2.3 years ago
RamRS 21k
0
Votes
2
Replies
1.2k
Views
Problem starting and running Gmaj (MAF file viewer and manipulator)
Gmaj JRE Java MAF UCSC
4.9 years ago
Thomas Bradley • 90 • updated 2.3 years ago
RamRS 21k
2
Votes
3
Replies
1.6k
Views
How can get MAF for set of SNPs from each population based on 1000 Genome?
R 1000 Genome hapmap ucsc Ensembl
4.9 years ago
star • 150 • updated 2.3 years ago
zx8754 7.5k
1
Vote
4
Replies
270
Views
Force Not to Ignore Repeats in UCSC Table Browser
ucsc
2.3 years ago
mgru • 10
0
Votes
0
Replies
346
Views
UCSC hub: autoscale option for multiwig track
ucsc multiWig track autoscale
2.3 years ago
m93 • 150
3
Votes
2
Replies
358
Views
variableStep vs fixedStep for range formats
ucsc formats bigwig bedgraph range
2.4 years ago
m93 • 150 • updated 2.4 years ago
RamRS 21k
2
Votes
1
Reply
993
Views
Mapability index (track) from UCSC
UCSC mapability
4.9 years ago
nbhardwaj • 130 • updated 2.4 years ago
RamRS 21k
1
Vote
3
Replies
587
Views
the expression of miRNA in ucsc genome browser
gene ucsc expression cancer miRNA
2.6 years ago
yueli7 • 40 • updated 2.4 years ago
mary • 20
0
Votes
1
Reply
378
Views
Error displaying GTEX like boxplot in UCSC Genome Browser - "Error creating boxplot from sample data"
ucsc genomebrowser boxplot GTEx Barcharts
2.4 years ago
ApoorvaB • 210
5
Votes
8
Replies
582
Views
Output bedGraph from genomeCoverageBed is missing "chr"
RNA-Seq ucsc genomeCoverageBed bedGraph bigWig
2.4 years ago
m93 • 150 • updated 2.4 years ago
RamRS 21k
12
Votes
5
Replies
6.9k
Views
Getting Genomic Sequences And Phastcons Scores Using Python From Ensembl/Ucsc?
python biopython ucsc ensembl sequence
10.6 years ago
User 9996 • 800 • updated 2.4 years ago
RamRS 21k
2
Votes
5
Replies
1.6k
Views
Bookmarklet To Open User Ucsc Genome Browser For Specific Chromosomal Location
ucsc genome
10.6 years ago
D W • 150 • updated 2.4 years ago
RamRS 21k
5
Votes
7
Replies
1.5k
Views
Length(Ucsc/Ensgene) % 3 != 0
ucsc cdna protein sequence translation
10.7 years ago
Pierre Lindenbaum 120k • updated 2.4 years ago
RamRS 21k
20
Votes
7
Replies
12k
Views
How Do I Get The Gene Names From The Chromosome Locations In A Wig File
wiggle ucsc coordinates galaxy
10.7 years ago
pixie@bioinfo ♦ 1.4k • updated 2.4 years ago
RamRS 21k
5
Votes
3
Replies
762
Views
How to get raw Github URL for a large file
ucsc url github
2.4 years ago
m93 • 150 • updated 2.4 years ago
jared.andrews07 ♦ 2.4k
5
Votes
1
Reply
552
Views
Converting narrowpeak files to make it compatible with UCSC trackhub
ucsc genomebrowser narrowpeakfile ucscutilites
2.4 years ago
ApoorvaB • 210
1
Vote
3
Replies
1.4k
Views
Retrieve Information From Ucsc Genome Browser ?
cnv ucsc next-gen sequencing
9.2 years ago
khikho • 100 • updated 2.4 years ago
Biostar 20
0
Votes
0
Replies
515
Views
Job: Software Engineer, Computational Genomics Lab/ Platform, University of California Santa Cruz, Santa Cruz, CA, USA
UCSC software engineer genomics Job
2.4 years ago
genomicshr • 10 • updated 2.4 years ago
genomax 68k
0
Votes
0
Replies
508
Views
Job: Junior Software Engineer, Computational Genomics Lab/ Platform (UCSC)
software engineer ucsc genomics Job
2.4 years ago
genomicshr • 10 • updated 2.4 years ago
Devon Ryan 90k
0
Votes
1
Reply
487
Views
Job: Senior Software Engineer, Computational Genomics Lab/ Platform (UCSC)
genomics software engineer ucsc Job
2.4 years ago
genomicshr • 10 • updated 2.4 years ago
Devon Ryan 90k
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