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Showing : Single Cell • reset
1
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2
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178
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Tutorial: Associating VDJ clonotyping data with scRNA-seq in Seurat
seurat single cell RNA-Seq TCR Tutorial
21 months ago
jared.andrews07 ♦ 2.4k
0
Votes
0
Replies
181
Views
Job: Postdoctoral Fellowship in Cancer Single Cell -Omics
RNA-Seq machine learning single cell cancer Job
21 months ago
javier.diazmejia • 0
0
Votes
0
Replies
185
Views
Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
genome single cell cancer sequencing Job
21 months ago
jmaanaki • 0 • updated 21 months ago
RamRS 21k
0
Votes
0
Replies
170
Views
News: Managing single cell transcriptomics: Course at EMBL-EBI, July 3-5
RNA-Seq single cell data Tutorial News
22 months ago
wendi • 0
3
Votes
6
Replies
251
Views
Use the single cell RNA-seq data for normal transcriptome analysis
RNA-Seq single cell
22 months ago
fanglujing • 30
1
Vote
1
Reply
422
Views
Normalizing using Seurat with large numbers of samples
single cell scRNA-Seq R
23 months ago
Kristin Muench • 410
2
Votes
10
Replies
302
Views
Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
single cell demultiplexing
23 months ago
user31888 • 60
1
Vote
0
Replies
130
Views
Monocle Trajectories Reversed - how best to correct?
monocle single cell RNA-Seq R
23 months ago
eoindosullivan • 10
0
Votes
0
Replies
193
Views
Job: Postdoctoral position in regulation of stem cell biology, Yale University
R next-gen job postdoc single cell Job
23 months ago
josien • 0
6
Votes
9
Replies
279
Views
How does a physics phd approach bioinformatics with a focus on machine learning?
python career advice single cell omics
24 months ago
brc • 10 • updated 24 months ago
Ali Jam • 10
22
Votes
8
Replies
1.7k
Views
Tool: BioTuring Browser: Making single-cell sequencing data in published studies really accessible!
single cell sc-rna RNA-Seq rna Tool
2.4 years ago
sonpham • 560 • updated 24 months ago
Jennifer Pham • 290
2
Votes
3
Replies
616
Views
Seurat object can't be imported into monocle:the object type you want to export to is not supported yet
seurat R monocle single cell RNA-Seq
2.0 years ago
yuhongruoyi • 10 • updated 2.0 years ago
lina.kroehling • 20
6
Votes
4
Replies
450
Views
A list of human cell cycle genes for Seurat
RNA-Seq Cell Cycle Single Cell
2.0 years ago
Pestudkaru • 20 • updated 2.0 years ago
Shicheng Guo ♦ 7.5k
0
Votes
1
Reply
251
Views
Seurat: Percentage distribution of cells in all clusters based on their treatment condition?
R RNA-Seq Seurat single cell
2.1 years ago
charlesgwellem • 0 • updated 2.1 years ago
Santosh Anand 4.8k
1
Vote
1
Reply
647
Views
In Seurat, what data is VlnPlot() plotting?
scRNA-Seq Seurat RNA-Seq single cell
2.1 years ago
Kristin Muench • 410
1
Vote
0
Replies
230
Views
Job: Postdoc position in computational analysis for single cell molecular data at Institut Curie (Paris)
job computational biology single cell Job
2.1 years ago
jane.merlevede • 10
0
Votes
1
Reply
379
Views
single cell analysis: normalize gene expression across samples
single cell 10x cell ranger
2.1 years ago
neta.zuckerman • 0
0
Votes
1
Reply
891
Views
How can i control the cluster number in scRNASeq clustering by Seurat package
RNA-Seq single cell Seurat
2.2 years ago
wenchuan.xie • 0 • updated 2.2 years ago
igor 7.7k
1
Vote
2
Replies
420
Views
Is there any way to infer percentage from the branches in trajectories plotted in Monocle?
single-cell single cell monocle R trajectory
2.5 years ago
Batu • 150 • updated 2.2 years ago
leon.zhan • 0
0
Votes
8
Replies
369
Views
Downloading single cell data from NCBI
ncbi single cell rna seq fastq-dump
2.2 years ago
V • 110
0
Votes
0
Replies
383
Views
Deconvolution Method in Seurat and convert from SingleCellExperiment
seurat single cell RNA-Seq R ChIP-Seq
2.2 years ago
hamza_karakurt • 0
1
Vote
0
Replies
476
Views
Job: Staff scientist in bioinformatics. KAUST Bioscience Core Lab.
job method development long read single cell ngs Job
2.2 years ago
YF • 10
1
Vote
0
Replies
304
Views
Align two single cell experiments
R single cell Job
2.3 years ago
elb • 160 • updated 2.3 years ago
Michael Dondrup 46k
5
Votes
3
Replies
1.1k
Views
Single Cell RNAseq Imputation in Seurat
RNA-Seq single cell imputation
2.5 years ago
bioinformatics.cancer • 180 • updated 2.3 years ago
kristoffer.vittingseerup ♦ 1.8k
5
Votes
2
Replies
748
Views
Seurat Cell Cycle Phase Assignments
seurat cell cycle RNA-Seq single cell
2.3 years ago
ianmw • 30 • updated 2.3 years ago
kristoffer.vittingseerup ♦ 1.8k
2
Votes
3
Replies
451
Views
HUGO and Ensembl ids
RNA-Seq single cell hugo Ensembl
2.4 years ago
rsafavi • 40 • updated 2.3 years ago
EagleEye 6.4k
26
Votes
5
Replies
6.2k
Views
Tutorial: Resources for flow cytometry bioinformatics
tutorial flow cytometry Tutorial single cell
2.4 years ago
Ahill ♦ 1.5k
0
Votes
0
Replies
342
Views
Single Cell Sequencing Quality
single cell samtools bedtools
2.4 years ago
hsbinf • 20 • updated 2.4 years ago
RamRS 21k
0
Votes
1
Reply
440
Views
Peak call? or Just convert to bedfile by bedtools bamtobed? to generate the accessibility matrix of single-end single cell ATAC-seq
ATAC-seq single cell
2.6 years ago
soya • 0 • updated 2.6 years ago
Devon Ryan 90k
0
Votes
1
Reply
679
Views
10X based Single cell sequencing for comparing two different disease states
single cell RNA-Seq
2.6 years ago
halo22 • 120 • updated 2.6 years ago
igor 7.7k
4
Votes
6
Replies
506
Views
plotting the expression profiles of different conditions in same plot
Single cell heatmap R Clustering
2.8 years ago
Za • 120 • updated 2.7 years ago
Biostar 20
1
Vote
1
Reply
388
Views
QC before single cell RNA seq?
RNA-Seq Single Cell QC
2.7 years ago
jevanveen • 20
4
Votes
1
Reply
2.0k
Views
Single cell RNA sequencing Seurat and Monocle
RNA-Seq single cell Seurat Monocle Cell Trajectory
2.9 years ago
bioinformatics.cancer • 180 • updated 2.7 years ago
dppb05 • 70
0
Votes
1
Reply
648
Views
how to judge the 10X genomics single cell data quality
single cell
2.8 years ago
biologo • 20
1
Vote
1
Reply
642
Views
errors in newCellDataSet Monocle function
single cell RNA-Seq
2.9 years ago
jonessara770 • 150 • updated 2.8 years ago
Batu • 150
2
Votes
2
Replies
1.3k
Views
Differential Expression Analysis with monocle and batch effect correction
RNA-Seq single cell batch effect
2.8 years ago
Poorya Parvizi • 40 • updated 2.8 years ago
Kevin Blighe 43k
0
Votes
0
Replies
527
Views
Job: Post-doc positions on non-coding RNAs in neurological diseases at RIKEN Yokohama Japan
single cell CRISPR lncRNA GWAS Job
2.8 years ago
chungchau.hon • 10
3
Votes
7
Replies
2.4k
Views
Storing a gene expression matrix in a matrix.mtx
Single cell software error
2.8 years ago
Za • 120 • updated 2.8 years ago
jbalberge • 80
0
Votes
5
Replies
546
Views
How to unique bwa mem reads?
bwa unique reads single cell ATAC-seq
2.8 years ago
niu.shengyong • 30
0
Votes
6
Replies
398
Views
Extract, combine substring and concatenate in the beginning of the same row
ATAC single cell string barcode
2.8 years ago
niu.shengyong • 30 • updated 2.8 years ago
Alex Reynolds 28k
0
Votes
0
Replies
816
Views
Comparing Different Single Cell Datasets
RNA-Seq compare single cell DE
2.9 years ago
sallehl • 0
2
Votes
4
Replies
854
Views
Open source alternatives to SureCell RNA Single-Cell App in Basespace?
RNA-Seq single cell ddseq sure cell illumina
2.9 years ago
greener • 10 • updated 2.9 years ago
allthebases • 0
2
Votes
3
Replies
3.4k
Views
Single Cell RNA-seq Mitochondrial Gene Expression
RNA-Seq single cell mitochondrial expression
3.8 years ago
bioinformatics.cancer • 180 • updated 3.0 years ago
Friederike 4.2k
1
Vote
0
Replies
717
Views
single-cell RNA-seq power analysis
RNA-Seq power analysis single cell
3.7 years ago
niu.shengyong • 30 • updated 3.0 years ago
Biostar 20
7
Votes
3
Replies
2.0k
Views
Clustering Cells using known marker genes (Single cell RNAseq)
single cell rnaseq
3.6 years ago
V • 110 • updated 3.1 years ago
PR • 10
1
Vote
1
Reply
964
Views
Job: MS/PhD Position: Computational Systems Biology, The University of Memphis
systems biology stochastic modeling single cell Job
3.1 years ago
bjdaigle • 10
12
Votes
10
Replies
1.4k
Views
What is the actual cause of excessive zeroes in single cell RNA-seq data? Is it PCR?
RNA-Seq single cell pcr modelling
3.4 years ago
Martin Modrák • 80
1
Vote
0
Replies
1.1k
Views
Job: Cancer Computational Genomics/Bioinformaticist Position - Stanford
RNA-Seq WGS single cell next-gen Job
3.4 years ago
christina.curtis • 10
11
Votes
0
Replies
2.6k
Views
Tool: UMI-Tools 0.5, now with tools for cell barcoded scRNA-seq
RNA-Seq single cell UMI Tool
3.5 years ago
i.sudbery 4.7k
1
Vote
1
Reply
585
Views
Make Dendrogram Wider
dendrogram RNAseq Single cell
3.7 years ago
V • 110
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