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Showing : RNA-Seq • reset
0
Votes
4
Replies
533
Views
Tools to do a linear or logistic regression of DEG
RNA-Seq DEG
2.8 years ago
amy16 • 40
0
Votes
5
Replies
674
Views
How to open a .tabular file in R or excel?
featureCounts tabular RNA-Seq
2.0 years ago
writetoroopali • 0
0
Votes
3
Replies
141
Views
this is a test post
rna-seq merge
7 months ago
natay.aberra • 10 • updated 4 months ago
RamRS 21k
2
Votes
3
Replies
363
Views
How to deal with the .sra.vdbcache files after downloading a sra file?
RNA-Seq
18 months ago
dz2353 • 80
0
Votes
1
Reply
629
Views
About CIRI's output
rna-seq CIRI splicing splicesites
2.5 years ago
csijst • 20 • updated 7 months ago
Magdalena • 0
9
Votes
10
Replies
425
Views
Hardware requirement for RNA-seq
rna-seq hardware alignment R
20 months ago
Antonio.Aubry • 10
0
Votes
1
Reply
348
Views
News: New bioinformatics courses at Edinburgh Genomics
RNA-Seq R Workshop Training Linux News
22 months ago
Edinburgh Genomics Training • 30
2
Votes
1
Reply
218
Views
News: Summer Courses @ Edinburgh Genomics
training courses workshop python RNA-Seq News
17 months ago
Edinburgh Genomics Training • 30
4
Votes
12
Replies
1.2k
Views
Python for bioinformatics
RNA-Seq sequence gene software error
3.1 years ago
MKS • 0
0
Votes
1
Reply
150
Views
DESeq2 results versus by eye comparison in IGV
RNA-Seq IGV DESeq2
17 months ago
kathryn.eckartt • 20 • updated 17 months ago
swbarnes2 5.7k
1
Vote
1
Reply
938
Views
what's wrong with htseq-count codes???
RNA-Seq
3.9 years ago
biologo • 20 • updated 17 months ago
lieven.sterck 5.1k
51
Votes
42
Replies
12k
Views
PCA plot from read count matrix from RNA-Seq
RNA-Seq pca
3.0 years ago
rachel.kubik12 • 80 • updated 17 months ago
mayankkaashyap • 0
0
Votes
0
Replies
158
Views
Job: POST DOC RESEARCH TRAINEE (RI)
R RNA-Seq SNP Job
17 months ago
dalois • 0
0
Votes
1
Reply
161
Views
Get bowtie2 to ignore isoform variants from Trinity assembly?
RNA-Seq
17 months ago
CephBirk • 0 • updated 17 months ago
h.mon 25k
3
Votes
2
Replies
238
Views
How to obtain transcript level TPM using stringtie?
RNA-Seq stringtie
17 months ago
kousi31 • 0 • updated 17 months ago
ruisergioluis • 20
1
Vote
4
Replies
200
Views
interpretation of orthofinder result
RNA-Seq Orthologous OrthoFinder
17 months ago
mxlsherry1992 • 10 • updated 17 months ago
geneticatt • 0
0
Votes
1
Reply
124
Views
WGCNA cannot be done to compare two conditions?
WGCNA RNA-Seq rna-seq
17 months ago
galiciaa • 0 • updated 17 months ago
Ar • 860
0
Votes
1
Reply
122
Views
Difficulty mapping Ribo-seq reads to annotated transcriptome features
Annotation Alignment HTSeq Ribo-Seq RNA-Seq
17 months ago
jpcchoy • 0
0
Votes
0
Replies
142
Views
Visualize gene fusions in IGV
RNA-Seq next-gen
17 months ago
Ron • 950
0
Votes
7
Replies
201
Views
analyze and compare PValues in 2 csv file by python
python csv RNA-Seq
17 months ago
ali.hakimzadeh • 0
0
Votes
0
Replies
89
Views
Kissplice2reftranscriptome error : IndexError
kissplice k2rt SNP RNA-Seq
17 months ago
jfo • 10
4
Votes
4
Replies
150
Views
Any help on how to detect viral transcripts in ONT RNAseq data
ONT RNA-Seq
17 months ago
j.thomas93 • 0 • updated 17 months ago
WouterDeCoster 39k
0
Votes
0
Replies
106
Views
MsiSensor Msi_Germline output
RNA-Seq
17 months ago
mandhirsikander • 0
0
Votes
1
Reply
120
Views
What is acceptable optimal overall percentage of Hisat2?
rna-seq
17 months ago
mathavanbioinfo • 10
1
Vote
8
Replies
2.5k
Views
Downloading SRA data using the SRA Toolkit
RNA-Seq rna-seq sequencing
5.5 years ago
F ♦ 3.4k • updated 17 months ago
Andy.Judell • 0
1
Vote
1
Reply
134
Views
p53 mutations for NCI60 cell lines
RNA-Seq gene
17 months ago
rotemkat • 0 • updated 17 months ago
prabin.dm • 160
0
Votes
7
Replies
231
Views
No aligned reads after featurecounts. BAM files have >85% reads mapped
RNA-Seq
17 months ago
LAB_2019 • 0 • updated 17 months ago
lieven.sterck 5.1k
1
Vote
4
Replies
177
Views
orthoFinder software question
RNA-Seq sequence
17 months ago
mxlsherry1992 • 10 • updated 17 months ago
h.mon 25k
1
Vote
1
Reply
129
Views
How to merge Kallisto TSV files for use with Tximport
RNA-Seq R Kallisto Tximport
17 months ago
RCAider19 • 0
6
Votes
6
Replies
1.1k
Views
Can we concatenate two fastq files from same sample but different runs
sequencing RNA-Seq
2.4 years ago
Payal • 30 • updated 17 months ago
anamaria • 30
1
Vote
5
Replies
253
Views
denovo transcriptome assembly
RNA-Seq Assembly
17 months ago
1234anjalianjali1234 • 30 • updated 17 months ago
kristoffer.vittingseerup ♦ 1.8k
0
Votes
0
Replies
102
Views
Differential gene expression based on other genes
RNA-Seq
17 months ago
jgsponer • 0
1
Vote
3
Replies
183
Views
How to process RMA data of gene microarry ?
RNA-Seq R
17 months ago
Laura_zz • 0 • updated 17 months ago
Kevin Blighe 43k
0
Votes
0
Replies
136
Views
How to quantify mutations by type (e.g. A>T, T>A, G>C, ...) within reads mapping to genes
RNA-Seq
17 months ago
gdeniz • 0
1
Vote
4
Replies
355
Views
NCBI Taxonomy IDs for Kraken-Silva Database
RNA-Seq
22 months ago
josmos43 • 0 • updated 17 months ago
lara.h.urban • 0
0
Votes
0
Replies
100
Views
DESeq multiple comparisons post normalization
RNA-Seq Deseq2 normalization
17 months ago
zapsep • 0
0
Votes
0
Replies
325
Views
Job: Certified Genetic Counselor [Full-Time]
Genetic Counselor genome RNA-Seq next-gen Job
17 months ago
RegenerationCenter • 0
4
Votes
6
Replies
635
Views
Splice junction sites and number of splitted reads from STAR aligned bam
RNA-Seq sashimi plot splice junctions
2.4 years ago
filippo.martignano • 10 • updated 17 months ago
phaedragius • 0
2
Votes
3
Replies
154
Views
Usage of Mutect2
gatk mutect2 SNP next-gen RNA-Seq
17 months ago
gprashant123 • 0 • updated 17 months ago
MatthewP • 110
2
Votes
4
Replies
176
Views
retrieving survival informations from cBioportal using Rstudio
RNA-Seq R gene survival
17 months ago
ghadou.ouss • 0
1
Vote
6
Replies
253
Views
Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_id, instead of gene_id
RNA-Seq R assembly gene
17 months ago
akh22 • 20
3
Votes
3
Replies
228
Views
how to normalize row counts before drawing heatmap?
R RNA-Seq heatmap
17 months ago
smyiz • 0
0
Votes
5
Replies
171
Views
normalization with RPKM
normalization RNA-Seq data rpkm transposon
17 months ago
frida • 10 • updated 17 months ago
darbinator • 180
0
Votes
1
Reply
187
Views
Human papillomavirus HPV annotation file (.gtf)
rna-seq alignment assembly RNA-Seq
17 months ago
yasmeen.abououf • 0 • updated 17 months ago
h.mon 25k
2
Votes
6
Replies
229
Views
htseq-count: error: the following arguments are required: featuresfilename
RNA-Seq rna-seq alignment sequencing sequence
19 months ago
sarfrajiiet • 0 • updated 17 months ago
h.mon 25k
0
Votes
2
Replies
179
Views
rna paired sequence sort is important
RNA-Seq sequence alignment
19 months ago
sarfrajiiet • 0 • updated 17 months ago
WouterDeCoster 39k
2
Votes
4
Replies
177
Views
How to extract the result table from NMF clustering (R package 'NMF')?
RNA-Seq
17 months ago
yuezhao97 • 0 • updated 17 months ago
Jean-Karim Heriche 19k
0
Votes
1
Reply
126
Views
Differential expression analysis error - TCGAbiolinks
RNA-Seq TCGA BRCA TCGAbiolinks
18 months ago
Misty • 0 • updated 17 months ago
Biostar 20
0
Votes
0
Replies
130
Views
DRIP-seq data analysis
RNA-Seq next-gen
17 months ago
archana.bioinfo87 • 120
4
Votes
4
Replies
214
Views
snakemake wildcard for fastq files
RNA-Seq snakemake config.yaml
17 months ago
arshil • 0 • updated 17 months ago
bari.ballew • 90
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