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11,801 results • Page
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Showing :
RNA-Seq
•
reset
0
Votes
4
Replies
555
Views
Tools to do a linear or logistic regression of DEG
RNA-Seq
DEG
3.0 years ago
amy16
• 40
0
Votes
5
Replies
702
Views
6 follow
How to open a .tabular file in R or excel?
featureCounts
tabular
RNA-Seq
2.3 years ago
writetoroopali
• 0
0
Votes
3
Replies
164
Views
this is a test post
rna-seq
merge
10 months ago
natay.aberra
• 10
• updated 7 months ago
RamRS
21k
2
Votes
3
Replies
405
Views
6 follow
How to deal with the .sra.vdbcache files after downloading a sra file?
RNA-Seq
22 months ago
dz2353
• 80
0
Votes
1
Reply
648
Views
About CIRI's output
rna-seq
CIRI
splicing
splicesites
2.8 years ago
csijst
• 20
• updated 11 months ago
Magdalena
• 0
9
Votes
10
Replies
454
Views
10 follow
Hardware requirement for RNA-seq
rna-seq
hardware
alignment
R
24 months ago
Antonio.Aubry
• 10
0
Votes
1
Reply
381
Views
News:
New bioinformatics courses at Edinburgh Genomics
RNA-Seq
R
Workshop
Training
Linux
News
2.1 years ago
Edinburgh Genomics Training
• 30
2
Votes
1
Reply
245
Views
News:
Summer Courses @ Edinburgh Genomics
training
courses
workshop
python
RNA-Seq
News
21 months ago
Edinburgh Genomics Training
• 30
4
Votes
12
Replies
1.2k
Views
7 follow
Python for bioinformatics
RNA-Seq
sequence
gene
software error
3.4 years ago
MKS
• 0
0
Votes
1
Reply
153
Views
DESeq2 results versus by eye comparison in IGV
RNA-Seq
IGV
DESeq2
21 months ago
kathryn.eckartt
• 20
• updated 21 months ago
swbarnes2
5.7k
1
Vote
1
Reply
939
Views
what's wrong with htseq-count codes???
RNA-Seq
4.2 years ago
biologo
• 20
• updated 21 months ago
lieven.sterck
5.1k
51
Votes
42
Replies
12k
Views
11 follow
PCA plot from read count matrix from RNA-Seq
RNA-Seq
pca
3.3 years ago
rachel.kubik12
• 80
• updated 21 months ago
mayankkaashyap
• 0
0
Votes
0
Replies
163
Views
Job:
POST DOC RESEARCH TRAINEE (RI)
R
RNA-Seq
SNP
Job
21 months ago
dalois
• 0
0
Votes
1
Reply
162
Views
Get bowtie2 to ignore isoform variants from Trinity assembly?
RNA-Seq
21 months ago
CephBirk
• 0
• updated 21 months ago
h.mon
25k
3
Votes
2
Replies
241
Views
How to obtain transcript level TPM using stringtie?
RNA-Seq
stringtie
21 months ago
kousi31
• 0
• updated 21 months ago
ruisergioluis
• 20
1
Vote
4
Replies
206
Views
interpretation of orthofinder result
RNA-Seq
Orthologous
OrthoFinder
21 months ago
mxlsherry1992
• 10
• updated 21 months ago
geneticatt
• 0
0
Votes
1
Reply
126
Views
WGCNA cannot be done to compare two conditions?
WGCNA
RNA-Seq
rna-seq
21 months ago
galiciaa
• 0
• updated 21 months ago
Ar
• 860
0
Votes
1
Reply
124
Views
Difficulty mapping Ribo-seq reads to annotated transcriptome features
Annotation
Alignment
HTSeq
Ribo-Seq
RNA-Seq
21 months ago
jpcchoy
• 0
0
Votes
0
Replies
144
Views
Visualize gene fusions in IGV
RNA-Seq
next-gen
21 months ago
Ron
• 950
0
Votes
7
Replies
207
Views
analyze and compare PValues in 2 csv file by python
python
csv
RNA-Seq
21 months ago
ali.hakimzadeh
• 0
0
Votes
0
Replies
91
Views
Kissplice2reftranscriptome error : IndexError
kissplice
k2rt
SNP
RNA-Seq
21 months ago
jfo
• 10
4
Votes
4
Replies
153
Views
Any help on how to detect viral transcripts in ONT RNAseq data
ONT
RNA-Seq
21 months ago
j.thomas93
• 0
• updated 21 months ago
WouterDeCoster
39k
0
Votes
0
Replies
109
Views
MsiSensor Msi_Germline output
RNA-Seq
21 months ago
mandhirsikander
• 0
0
Votes
1
Reply
121
Views
What is acceptable optimal overall percentage of Hisat2?
rna-seq
21 months ago
mathavanbioinfo
• 10
1
Vote
8
Replies
2.5k
Views
Downloading SRA data using the SRA Toolkit
RNA-Seq
rna-seq
sequencing
5.8 years ago
F
♦ 3.4k
• updated 21 months ago
Andy.Judell
• 0
1
Vote
1
Reply
134
Views
p53 mutations for NCI60 cell lines
RNA-Seq
gene
21 months ago
rotemkat
• 0
• updated 21 months ago
prabin.dm
• 160
0
Votes
7
Replies
235
Views
No aligned reads after featurecounts. BAM files have >85% reads mapped
RNA-Seq
21 months ago
LAB_2019
• 0
• updated 21 months ago
lieven.sterck
5.1k
1
Vote
4
Replies
185
Views
orthoFinder software question
RNA-Seq
sequence
21 months ago
mxlsherry1992
• 10
• updated 21 months ago
h.mon
25k
1
Vote
1
Reply
133
Views
How to merge Kallisto TSV files for use with Tximport
RNA-Seq
R
Kallisto
Tximport
21 months ago
RCAider19
• 0
6
Votes
6
Replies
1.1k
Views
6 follow
Can we concatenate two fastq files from same sample but different runs
sequencing
RNA-Seq
2.7 years ago
Payal
• 30
• updated 21 months ago
anamaria
• 30
1
Vote
5
Replies
255
Views
denovo transcriptome assembly
RNA-Seq
Assembly
21 months ago
1234anjalianjali1234
• 30
• updated 21 months ago
kristoffer.vittingseerup
♦ 1.8k
0
Votes
0
Replies
102
Views
Differential gene expression based on other genes
RNA-Seq
21 months ago
jgsponer
• 0
1
Vote
3
Replies
187
Views
How to process RMA data of gene microarry ?
RNA-Seq
R
21 months ago
Laura_zz
• 0
• updated 21 months ago
Kevin Blighe
43k
0
Votes
0
Replies
136
Views
How to quantify mutations by type (e.g. A>T, T>A, G>C, ...) within reads mapping to genes
RNA-Seq
21 months ago
gdeniz
• 0
1
Vote
4
Replies
355
Views
NCBI Taxonomy IDs for Kraken-Silva Database
RNA-Seq
2.1 years ago
josmos43
• 0
• updated 21 months ago
lara.h.urban
• 0
0
Votes
0
Replies
100
Views
DESeq multiple comparisons post normalization
RNA-Seq
Deseq2
normalization
21 months ago
zapsep
• 0
0
Votes
0
Replies
327
Views
Job:
Certified Genetic Counselor [Full-Time]
Genetic Counselor
genome
RNA-Seq
next-gen
Job
21 months ago
RegenerationCenter
• 0
4
Votes
6
Replies
637
Views
Splice junction sites and number of splitted reads from STAR aligned bam
RNA-Seq
sashimi plot
splice junctions
2.7 years ago
filippo.martignano
• 10
• updated 21 months ago
phaedragius
• 0
2
Votes
3
Replies
156
Views
Usage of Mutect2
gatk
mutect2
SNP
next-gen
RNA-Seq
21 months ago
gprashant123
• 0
• updated 21 months ago
MatthewP
• 110
2
Votes
4
Replies
179
Views
retrieving survival informations from cBioportal using Rstudio
RNA-Seq
R
gene
survival
21 months ago
ghadou.ouss
• 0
1
Vote
6
Replies
258
Views
Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_id, instead of gene_id
RNA-Seq
R
assembly
gene
21 months ago
akh22
• 20
3
Votes
3
Replies
229
Views
how to normalize row counts before drawing heatmap?
R
RNA-Seq
heatmap
21 months ago
smyiz
• 0
0
Votes
5
Replies
175
Views
normalization with RPKM
normalization
RNA-Seq
data
rpkm
transposon
21 months ago
frida
• 10
• updated 21 months ago
darbinator
• 180
0
Votes
1
Reply
189
Views
Human papillomavirus HPV annotation file (.gtf)
rna-seq
alignment
assembly
RNA-Seq
21 months ago
yasmeen.abououf
• 0
• updated 21 months ago
h.mon
25k
2
Votes
6
Replies
232
Views
htseq-count: error: the following arguments are required: featuresfilename
RNA-Seq
rna-seq
alignment
sequencing
sequence
22 months ago
sarfrajiiet
• 0
• updated 21 months ago
h.mon
25k
0
Votes
2
Replies
180
Views
rna paired sequence sort is important
RNA-Seq
sequence
alignment
22 months ago
sarfrajiiet
• 0
• updated 21 months ago
WouterDeCoster
39k
2
Votes
4
Replies
177
Views
How to extract the result table from NMF clustering (R package 'NMF')?
RNA-Seq
21 months ago
yuezhao97
• 0
• updated 21 months ago
Jean-Karim Heriche
19k
0
Votes
1
Reply
128
Views
Differential expression analysis error - TCGAbiolinks
RNA-Seq
TCGA
BRCA
TCGAbiolinks
21 months ago
Misty
• 0
• updated 21 months ago
Biostar
20
0
Votes
0
Replies
131
Views
DRIP-seq data analysis
RNA-Seq
next-gen
21 months ago
archana.bioinfo87
• 120
4
Votes
4
Replies
214
Views
snakemake wildcard for fastq files
RNA-Seq
snakemake
config.yaml
21 months ago
arshil
• 0
• updated 21 months ago
bari.ballew
• 90
11,801 results • Page
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