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Showing : RNA-Seq • reset
0
Votes
2
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88
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see reads in .bam file, no counts after HTseq
5 months ago emilybowie2 • 0 • updated 14 days ago Leo • 0
4
Votes
12
Replies
1.1k
Views
7 follow
Python for bioinformatics
2.1 years ago MKS • 0 • updated 4 months ago pradnya.bamane23 • 0
0
Votes
1
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83
Views
DESeq2 results versus by eye comparison in IGV
5 months ago kathryn.eckartt • 20 • updated 5 months ago swbarnes2 5.7k
0
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0
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89
Views
Job: London LIDo PhD studentship
5 months ago dxia • 0
1
Vote
1
Reply
885
Views
what's wrong with htseq-count codes???
3.0 years ago biologo • 20 • updated 5 months ago lieven.sterck 5.1k
51
Votes
42
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12k
Views
11 follow
PCA plot from read count matrix from RNA-Seq
2.1 years ago rachel.kubik12 • 80 • updated 5 months ago mayankkaashyap • 0
0
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0
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93
Views
Job: POST DOC RESEARCH TRAINEE (RI)
5 months ago dalois • 0
0
Votes
1
Reply
103
Views
Get bowtie2 to ignore isoform variants from Trinity assembly?
5 months ago CephBirk • 0 • updated 5 months ago h.mon 25k
3
Votes
2
Replies
182
Views
How to obtain transcript level TPM using stringtie?
6 months ago kousi31 • 0 • updated 5 months ago ruisergioluis • 20
1
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4
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125
Views
interpretation of orthofinder result
5 months ago mxlsherry1992 • 10 • updated 5 months ago geneticatt • 0
0
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1
Reply
78
Views
WGCNA cannot be done to compare two conditions?
5 months ago galiciaa • 0 • updated 5 months ago Ar • 860
0
Votes
1
Reply
77
Views
Difficulty mapping Ribo-seq reads to annotated transcriptome features
5 months ago jpcchoy • 0
0
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0
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92
Views
Visualize gene fusions in IGV
5 months ago Ron • 950
0
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7
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109
Views
analyze and compare PValues in 2 csv file by python
5 months ago ali.hakimzadeh • 0
0
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0
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54
Views
Kissplice2reftranscriptome error : IndexError
5 months ago jfo • 10
4
Votes
4
Replies
97
Views
Any help on how to detect viral transcripts in ONT RNAseq data
5 months ago j.thomas93 • 0 • updated 5 months ago WouterDeCoster 39k
0
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0
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62
Views
MsiSensor Msi_Germline output
5 months ago mandhirsikander • 0
0
Votes
1
Reply
72
Views
What is acceptable optimal overall percentage of Hisat2?
5 months ago mathavanbioinfo • 10
1
Vote
8
Replies
2.5k
Views
Downloading SRA data using the SRA Toolkit
4.6 years ago F ♦ 3.4k • updated 5 months ago Andy.Judell • 0
1
Vote
1
Reply
93
Views
p53 mutations for NCI60 cell lines
5 months ago rotemkat • 0 • updated 5 months ago prabin.dm • 160
0
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7
Replies
158
Views
No aligned reads after featurecounts. BAM files have >85% reads mapped
5 months ago LAB_2019 • 0 • updated 5 months ago lieven.sterck 5.1k
1
Vote
4
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114
Views
orthoFinder software question
5 months ago mxlsherry1992 • 10 • updated 5 months ago h.mon 25k
1
Vote
1
Reply
79
Views
How to merge Kallisto TSV files for use with Tximport
5 months ago RCAider19 • 0
6
Votes
6
Replies
1.0k
Views
6 follow
Can we concatenate two fastq files from same sample but different runs
17 months ago Payal • 30 • updated 5 months ago anamaria • 30
1
Vote
5
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186
Views
denovo transcriptome assembly
5 months ago 1234anjalianjali1234 • 30 • updated 5 months ago kristoffer.vittingseerup ♦ 1.8k
0
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0
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67
Views
Differential gene expression based on other genes
5 months ago jgsponer • 0
1
Vote
3
Replies
135
Views
How to process RMA data of gene microarry ?
6 months ago Laura_zz • 0 • updated 5 months ago Kevin Blighe 43k
0
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0
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82
Views
How to quantify mutations by type (e.g. A>T, T>A, G>C, ...) within reads mapping to genes
5 months ago gdeniz • 0
1
Vote
4
Replies
302
Views
NCBI Taxonomy IDs for Kraken-Silva Database
10 months ago josmos43 • 0 • updated 5 months ago lara.h.urban • 0
0
Votes
0
Replies
64
Views
DESeq multiple comparisons post normalization
5 months ago zapsep • 0
0
Votes
0
Replies
273
Views
Job: Certified Genetic Counselor [Full-Time]
5 months ago RegenerationCenter • 0
4
Votes
6
Replies
577
Views
Splice junction sites and number of splitted reads from STAR aligned bam
17 months ago filippo.martignano • 10 • updated 5 months ago phaedragius • 0
2
Votes
3
Replies
99
Views
Usage of Mutect2
5 months ago gprashant123 • 0 • updated 5 months ago MatthewP • 110
2
Votes
4
Replies
117
Views
retrieving survival informations from cBioportal using Rstudio
5 months ago ghadou.ouss • 0
1
Vote
6
Replies
174
Views
Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_id, instead of gene_id
6 months ago akh22 • 20
3
Votes
3
Replies
184
Views
how to normalize row counts before drawing heatmap?
6 months ago smyiz • 0
0
Votes
5
Replies
127
Views
normalization with RPKM
6 months ago frida • 10 • updated 6 months ago darbinator • 180
0
Votes
1
Reply
143
Views
Human papillomavirus HPV annotation file (.gtf)
6 months ago yasmeen.abououf • 0 • updated 6 months ago h.mon 25k
2
Votes
6
Replies
191
Views
htseq-count: error: the following arguments are required: featuresfilename
7 months ago sarfrajiiet • 0 • updated 6 months ago h.mon 25k
0
Votes
2
Replies
139
Views
rna paired sequence sort is important
7 months ago sarfrajiiet • 0 • updated 6 months ago WouterDeCoster 39k
12,027 results • Page 1 of 301
Recent Votes
Answer: test question 1
Answer: test question 1
Markdown
Comment: Markdown
New test post with the AJAX system
Answer: Markdown
Markdown
A: Which Are The Best Programming Languages For A Bioinformatician?
A: Which Are The Best Programming Languages For A Bioinformatician?
Answer: Which Are The Best Programming Languages For A Bioinformatician?
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Recent Replies
Comment: " testing dfg " by Natay Aberra 0
Thanks a lot!
Comment: " testing dfg " by RamRS 21k
Drag and drop is frigging ***AWESOME***
Answer: " testing dfg " by Natay Aberra 0
Hello, test drag and drop of comments
Comment: " testing dfg " by RamRS 21k
Testing twitter embedding: https://www.twitter.com/statnews/status/656174802911129600 https://twitter.com/statnews/status/660506539762057…
Answer: test question 1 by Linda • 20
more than 10 characters
Comment: Which Are The Best Programming Languages For A Bioinformatician? by Digital • 0
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Comment: " testing dfg " by RamRS 21k
Testing highlighting functionality. Using `<span style="background-color: #FFFF00">`: <span style="background-color: #FFFF00">Span trial</…
Comment: " testing dfg " by RamRS 21k
Testing <u>underline</u> functionality.
Comment: " testing dfg " by RamRS 21k
Testing comment with parentheses in URL: (this URL: https://www.ncbi.nlm.nih.gov/search/all/?term=BRCA1%20AND%20(Human%20OR%20Mouse))
Comment: get gene biotype for hg38 refseq by Natay Aberra 0
test the bumping
Comment: get gene biotype for hg38 refseq by genomax 68k
http://test.biostars.org/accounts/profile/2/ http://test.biostars.org/p/34/
Comment: New test post with the AJAX system by Natay Aberra 0
Yeah we will probably end up doing that.
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/accounts/profile/18713/ http://test.biostars.org/p/p371267/#p371295 test the bumping
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/p/p371285/ http://test.biostars.org/accounts/profile/user-2/
Comment: New test post with the AJAX system by genomax 68k
Checking to see if this comment bumps the thread to top.
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