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Showing : PCA • reset
51
Votes
42
Replies
12k
Views
11 follow
PCA plot from read count matrix from RNA-Seq
RNA-Seq pca
3.3 years ago
rachel.kubik12 • 80 • updated 21 months ago
mayankkaashyap • 0
10
Votes
2
Replies
2.2k
Views
PCA using HapMap population data
PCA HapMap VCF genotype
5.0 years ago
eze.anokian • 10 • updated 21 months ago
zx8754 7.5k
20
Votes
8
Replies
312
Views
Why do PCA+tSNE/viSNE or PCA+UMAP, and not just tSNE/viSNE or UMAP on their own?
tsne umap pca visne dimension reduction
21 months ago
Kevin Blighe 43k • updated 21 months ago
chris86 • 290
1
Vote
4
Replies
166
Views
How to in R: Include principal components as covariates in analysis
pca covariates principal components
22 months ago
RNAseqer • 110 • updated 22 months ago
Kevin Blighe 43k
1
Vote
6
Replies
195
Views
How to create a PCA Plot of Proteomics Data in R?
r proteomics pca
22 months ago
ishackm • 60
2
Votes
1
Reply
163
Views
Principal components analysis of SNP data
pca SNP Principal components
22 months ago
Abdul Rafay Khan • 1000
7
Votes
11
Replies
328
Views
PCA analysis with R
R PCA ggfortify autoplot
22 months ago
manjumoorthy95 • 10 • updated 22 months ago
Kevin Blighe 43k
11
Votes
2
Replies
1.9k
Views
How Pca Was Done To Relate Health Status And Abundance Of Bacteria?
pca metagenomics bacteria
9.6 years ago
Tianyang Li • 490 • updated 23 months ago
Biostar 20
2
Votes
6
Replies
254
Views
Different mappings, different PCAs using TEtranscripts
pca TEtranscripts
23 months ago
raquelgarza95 • 40
1
Vote
1
Reply
1.0k
Views
What is the use of PCA in ethnicity correction
pca
5.0 years ago
MAPK ♦ 1.4k • updated 23 months ago
Biostar 20
0
Votes
0
Replies
162
Views
Where to get population diversity information of GTEx database?
GTEx pca rna-seq
23 months ago
r.tor • 40
7
Votes
6
Replies
2.9k
Views
EIGENSOFT : Ploteig, 3D Plots
SNP EIGENSOFT PLOT PCA
5.7 years ago
aritra90 • 40 • updated 23 months ago
ravikumardhanapal • 0
2
Votes
3
Replies
261
Views
How to check if first two components of PCA are separated without visualisation?
pca machine learning R Python NGS
24 months ago
fernardo • 130 • updated 23 months ago
raunakms ♦ 1.1k
10
Votes
16
Replies
325
Views
Post PCA analysis
pca population stratification correlation matrix
24 months ago
charvinangia • 30 • updated 24 months ago
Kevin Blighe 43k
3
Votes
11
Replies
306
Views
Can this PCA be a highly good result?
machine learning PCA RNA-seq NGS
24 months ago
fernardo • 130
10
Votes
8
Replies
3.1k
Views
7 follow
input counts to PCA in RNAseq
RNA-Seq PCA R ggplot2
3.5 years ago
elizabethR • 70 • updated 2.0 years ago
Kevin Blighe 43k
0
Votes
0
Replies
210
Views
Reference set of SNPs for SNP-pruning for PCA in GWAS
snp gwas pca linkage disequilibrium pruning
2.0 years ago
pcsk9 • 0
0
Votes
1
Reply
204
Views
pcaMethods: What is best suited for analysing log2cpm data?
RNA-Seq pca
2.0 years ago
augihol • 20 • updated 2.0 years ago
Kevin Blighe 43k
5
Votes
4
Replies
233
Views
A weird PCA result using a local Galaxy
RNA-Seq PCA Principal component analysis Galaxy
2.1 years ago
Gary • 450 • updated 2.1 years ago
Devon Ryan 90k
3
Votes
1
Reply
395
Views
Principal component analysis: PC2 contribute more to variance than PC1?
PCA principal component analysis seurat
2.1 years ago
chilifan • 70 • updated 2.1 years ago
manuel.belmadani • 830
17
Votes
9
Replies
556
Views
Tool: PCAtools: everything Principal Components Analysis
pca eigenvector R bioconductor Tool
2.1 years ago
Kevin Blighe 43k • updated 2.1 years ago
prasundutta87 • 330
3
Votes
2
Replies
295
Views
sva combat removes wanted biological variation
rna-seq r combat sva PCA
2.1 years ago
exin • 50 • updated 2.1 years ago
zx8754 7.5k
23
Votes
11
Replies
3.4k
Views
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000 genomes PLINK PCA ethnicity Tutorial
2.1 years ago
Kevin Blighe 43k
6
Votes
5
Replies
4.3k
Views
Question About Hellinger Distances And Principle Coordinates Analysis
pca
7.3 years ago
bioinformaticshelp • 10 • updated 2.1 years ago
Biostar 20
2
Votes
2
Replies
461
Views
R RGL plot3d different symbols
R pca rgl
2.3 years ago
dp0b • 30 • updated 2.1 years ago
Alex Reynolds 28k
2
Votes
15
Replies
357
Views
to get each covariate with PC loading in PCA
RNA-seq PCA
2.2 years ago
Grace_G • 20
53
Votes
42
Replies
8.0k
Views
10 follow
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
1000 genomes PCA VCF PLINK Tutorial
3.5 years ago
Kevin Blighe 43k • updated 2.2 years ago
alicodendrochit • 0
0
Votes
1
Reply
299
Views
How to choose best PCA for reducing genomic inflation
PCA GWAS PLINK Associtaion study genomic inflation
2.2 years ago
BioRyder • 160 • updated 2.2 years ago
Kevin Blighe 43k
29
Votes
30
Replies
3.3k
Views
6 follow
Tool: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, venn diagram, you name it.
gene PCA Venn diagram Tool RNA-Seq
2.2 years ago
Jennifer Pham • 290
1
Vote
5
Replies
409
Views
how to plot PCA for microarray normalized data
PCA
2.2 years ago
raya.girish • 20 • updated 2.2 years ago
Benn 6.9k
1
Vote
1
Reply
255
Views
Whether to include reference genome in PCA for association analysis?
gwas pca
2.3 years ago
Phoenix Mu • 0 • updated 2.3 years ago
zx8754 7.5k
38
Votes
9
Replies
5.0k
Views
7 follow
why PCA for RNA-Seq but tSNE for scRNA-seq?
pca RNA-Seq tSNE scRNA-seq
2.8 years ago
CY • 340 • updated 2.3 years ago
Minstein • 100
79
Votes
27
Replies
9.2k
Views
9 follow
PCA in a RNA seq analysis
RNA-Seq pca
3.4 years ago
Mozart • 130 • updated 2.3 years ago
Giovanni M Dall'Olio 26k
1
Vote
5
Replies
932
Views
How to do feature selection using PCA?
RNA-Seq R pca
2.3 years ago
ahmad mousavi • 430
6
Votes
2
Replies
786
Views
How to perform PCA on gene expression?
PCA qPCR Clustering Marker gene Gene expression
2.3 years ago
Thomas B. • 10 • updated 2.3 years ago
ahmad mousavi • 430
0
Votes
2
Replies
269
Views
Getting loadings of components from pcaMethods
pcamethods pca
2.4 years ago
johnnytam100 • 100 • updated 2.4 years ago
Philipp Bayer 6.1k
0
Votes
1
Reply
510
Views
Question about PCA plot using RPKM/FPKM.
PCA RNA-Seq FPKM
2.4 years ago
hxlei613 • 80 • updated 2.4 years ago
Kevin Blighe 43k
0
Votes
0
Replies
255
Views
Mitochondrial genomic analysis by PCoA, PCA and Arlequin
Arlequin Organelle genome PCoA PCA
2.4 years ago
micro32uvas • 10
0
Votes
3
Replies
1.4k
Views
adding PCA ellipses on ggplot2
gene RNA-Seq ggplot2 pca
2.4 years ago
demoraesdiogo2017 • 10
3
Votes
7
Replies
845
Views
How to create PCA plot and heatmaps using only significant genes in edgeR ?
edgeR heatmaps PCA R
2.7 years ago
Björn • 40 • updated 2.5 years ago
zx8754 7.5k
9
Votes
3
Replies
596
Views
Is it possible to make a PCA plot for samples using TPM exprssion values in R?
RNA-Seq PCA TPM
2.5 years ago
rimgubaev • 120 • updated 2.5 years ago
andrew.j.skelton73 5.7k
0
Votes
5
Replies
416
Views
Few SNPs after merging my samples with 1000G phase 3
1000G pca SNP
2.5 years ago
Phoenix Mu • 0
1
Vote
1
Reply
561
Views
How to reproduce MATLAB tsne('algorithm', 'exact') result in R?
tsne pca R Rtsne matlab
2.5 years ago
mk • 90
3
Votes
3
Replies
343
Views
Confusion About Observations vs. Variables in my Data
R RNA-Seq k-means pca beginner
2.5 years ago
Ark • 70 • updated 2.5 years ago
RamRS 21k
1
Vote
2
Replies
345
Views
Probabilistic PCA on very sparse SNP matrix
pca probabilistic pca snpmatrix snpstats
2.7 years ago
dominicdhall • 40 • updated 2.6 years ago
Biostar 20
2
Votes
4
Replies
6.4k
Views
Scale and Center [normalized] RNA-seq expression counts for PCA ?
RNA-Seq pca R sequencing genome
6.0 years ago
gaelgarcia • 140 • updated 2.6 years ago
Kevin Blighe 43k
4
Votes
6
Replies
1.7k
Views
PCA Analysis Direction
R gene Microarray Python PCA
4.6 years ago
Steve • 10 • updated 2.6 years ago
Biostar 20
2
Votes
2
Replies
741
Views
PCA implementation in plink
Plink PCA population
2.6 years ago
prasundutta87 • 330 • updated 2.6 years ago
chrchang523 5.2k
4
Votes
6
Replies
792
Views
PCA analysis for beginners
ngs R sequencing PCA vcf
2.6 years ago
Bella_p • 50 • updated 2.6 years ago
zx8754 7.5k
2
Votes
1
Reply
404
Views
What values should I use for principle component analysis of microarray data?
microarray PCA R
2.6 years ago
reubenmcgregor88 • 40 • updated 2.6 years ago
Kevin Blighe 43k
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