Biostar Beta. Not for public use.
Latest
Topics
Tags
News
Jobs
Tutorials
Forum
Planet
Community
New Post
Log In
About
New Post
Latest
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit to: all time
all time
today
this week
this month
this year
185 results • Page
1 of 4
Sort by: Rank
Rank
Views
Votes
Replies
Showing :
PCA
•
reset
51
Votes
42
Replies
12k
Views
11 follow
PCA plot from read count matrix from RNA-Seq
RNA-Seq
pca
3.3 years ago
rachel.kubik12
• 80
• updated 21 months ago
mayankkaashyap
• 0
10
Votes
2
Replies
2.2k
Views
PCA using HapMap population data
PCA
HapMap
VCF
genotype
5.0 years ago
eze.anokian
• 10
• updated 21 months ago
zx8754
7.5k
20
Votes
8
Replies
312
Views
Why do PCA+tSNE/viSNE or PCA+UMAP, and not just tSNE/viSNE or UMAP on their own?
tsne
umap
pca
visne
dimension reduction
21 months ago
Kevin Blighe
43k
• updated 21 months ago
chris86
• 290
1
Vote
4
Replies
166
Views
How to in R: Include principal components as covariates in analysis
pca
covariates
principal components
22 months ago
RNAseqer
• 110
• updated 22 months ago
Kevin Blighe
43k
1
Vote
6
Replies
195
Views
How to create a PCA Plot of Proteomics Data in R?
r
proteomics
pca
22 months ago
ishackm
• 60
2
Votes
1
Reply
163
Views
Principal components analysis of SNP data
pca
SNP
Principal components
22 months ago
Abdul Rafay Khan
• 1000
7
Votes
11
Replies
328
Views
PCA analysis with R
R
PCA
ggfortify
autoplot
22 months ago
manjumoorthy95
• 10
• updated 22 months ago
Kevin Blighe
43k
11
Votes
2
Replies
1.9k
Views
How Pca Was Done To Relate Health Status And Abundance Of Bacteria?
pca
metagenomics
bacteria
9.6 years ago
Tianyang Li
• 490
• updated 23 months ago
Biostar
20
2
Votes
6
Replies
254
Views
Different mappings, different PCAs using TEtranscripts
pca
TEtranscripts
23 months ago
raquelgarza95
• 40
1
Vote
1
Reply
1.0k
Views
What is the use of PCA in ethnicity correction
pca
5.0 years ago
MAPK
♦ 1.4k
• updated 23 months ago
Biostar
20
0
Votes
0
Replies
162
Views
Where to get population diversity information of GTEx database?
GTEx
pca
rna-seq
23 months ago
r.tor
• 40
7
Votes
6
Replies
2.9k
Views
EIGENSOFT : Ploteig, 3D Plots
SNP
EIGENSOFT
PLOT
PCA
5.7 years ago
aritra90
• 40
• updated 23 months ago
ravikumardhanapal
• 0
2
Votes
3
Replies
261
Views
How to check if first two components of PCA are separated without visualisation?
pca
machine learning
R
Python
NGS
24 months ago
fernardo
• 130
• updated 23 months ago
raunakms
♦ 1.1k
10
Votes
16
Replies
325
Views
Post PCA analysis
pca
population stratification
correlation matrix
24 months ago
charvinangia
• 30
• updated 24 months ago
Kevin Blighe
43k
3
Votes
11
Replies
306
Views
Can this PCA be a highly good result?
machine learning
PCA
RNA-seq
NGS
24 months ago
fernardo
• 130
10
Votes
8
Replies
3.1k
Views
7 follow
input counts to PCA in RNAseq
RNA-Seq
PCA
R
ggplot2
3.5 years ago
elizabethR
• 70
• updated 2.0 years ago
Kevin Blighe
43k
0
Votes
0
Replies
210
Views
Reference set of SNPs for SNP-pruning for PCA in GWAS
snp
gwas
pca
linkage disequilibrium
pruning
2.0 years ago
pcsk9
• 0
0
Votes
1
Reply
204
Views
pcaMethods: What is best suited for analysing log2cpm data?
RNA-Seq
pca
2.0 years ago
augihol
• 20
• updated 2.0 years ago
Kevin Blighe
43k
5
Votes
4
Replies
233
Views
A weird PCA result using a local Galaxy
RNA-Seq
PCA
Principal component analysis
Galaxy
2.1 years ago
Gary
• 450
• updated 2.1 years ago
Devon Ryan
90k
3
Votes
1
Reply
395
Views
Principal component analysis: PC2 contribute more to variance than PC1?
PCA
principal component analysis
seurat
2.1 years ago
chilifan
• 70
• updated 2.1 years ago
manuel.belmadani
• 830
17
Votes
9
Replies
556
Views
Tool:
PCAtools: everything Principal Components Analysis
pca
eigenvector
R
bioconductor
Tool
2.1 years ago
Kevin Blighe
43k
• updated 2.1 years ago
prasundutta87
• 330
3
Votes
2
Replies
295
Views
sva combat removes wanted biological variation
rna-seq
r
combat
sva
PCA
2.1 years ago
exin
• 50
• updated 2.1 years ago
zx8754
7.5k
23
Votes
11
Replies
3.4k
Views
Tutorial:
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000 genomes
PLINK
PCA
ethnicity
Tutorial
2.1 years ago
Kevin Blighe
43k
6
Votes
5
Replies
4.3k
Views
Question About Hellinger Distances And Principle Coordinates Analysis
pca
7.3 years ago
bioinformaticshelp
• 10
• updated 2.1 years ago
Biostar
20
2
Votes
2
Replies
461
Views
R RGL plot3d different symbols
R
pca
rgl
2.3 years ago
dp0b
• 30
• updated 2.1 years ago
Alex Reynolds
28k
2
Votes
15
Replies
357
Views
to get each covariate with PC loading in PCA
RNA-seq
PCA
2.2 years ago
Grace_G
• 20
53
Votes
42
Replies
8.0k
Views
10 follow
Tutorial:
Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
1000 genomes
PCA
VCF
PLINK
Tutorial
3.5 years ago
Kevin Blighe
43k
• updated 2.2 years ago
alicodendrochit
• 0
0
Votes
1
Reply
299
Views
How to choose best PCA for reducing genomic inflation
PCA
GWAS
PLINK
Associtaion study
genomic inflation
2.2 years ago
BioRyder
• 160
• updated 2.2 years ago
Kevin Blighe
43k
29
Votes
30
Replies
3.3k
Views
6 follow
Tool:
BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, venn diagram, you name it.
gene
PCA
Venn diagram
Tool
RNA-Seq
2.2 years ago
Jennifer Pham
• 290
1
Vote
5
Replies
409
Views
how to plot PCA for microarray normalized data
PCA
2.2 years ago
raya.girish
• 20
• updated 2.2 years ago
Benn
6.9k
1
Vote
1
Reply
255
Views
Whether to include reference genome in PCA for association analysis?
gwas
pca
2.3 years ago
Phoenix Mu
• 0
• updated 2.3 years ago
zx8754
7.5k
38
Votes
9
Replies
5.0k
Views
7 follow
why PCA for RNA-Seq but tSNE for scRNA-seq?
pca
RNA-Seq
tSNE
scRNA-seq
2.8 years ago
CY
• 340
• updated 2.3 years ago
Minstein
• 100
79
Votes
27
Replies
9.2k
Views
9 follow
PCA in a RNA seq analysis
RNA-Seq
pca
3.4 years ago
Mozart
• 130
• updated 2.3 years ago
Giovanni M Dall'Olio
26k
1
Vote
5
Replies
932
Views
How to do feature selection using PCA?
RNA-Seq
R
pca
2.3 years ago
ahmad mousavi
• 430
6
Votes
2
Replies
786
Views
How to perform PCA on gene expression?
PCA
qPCR
Clustering
Marker gene
Gene expression
2.3 years ago
Thomas B.
• 10
• updated 2.3 years ago
ahmad mousavi
• 430
0
Votes
2
Replies
269
Views
Getting loadings of components from pcaMethods
pcamethods
pca
2.4 years ago
johnnytam100
• 100
• updated 2.4 years ago
Philipp Bayer
6.1k
0
Votes
1
Reply
510
Views
Question about PCA plot using RPKM/FPKM.
PCA
RNA-Seq
FPKM
2.4 years ago
hxlei613
• 80
• updated 2.4 years ago
Kevin Blighe
43k
0
Votes
0
Replies
255
Views
Mitochondrial genomic analysis by PCoA, PCA and Arlequin
Arlequin
Organelle genome
PCoA
PCA
2.4 years ago
micro32uvas
• 10
0
Votes
3
Replies
1.4k
Views
adding PCA ellipses on ggplot2
gene
RNA-Seq
ggplot2
pca
2.4 years ago
demoraesdiogo2017
• 10
3
Votes
7
Replies
845
Views
How to create PCA plot and heatmaps using only significant genes in edgeR ?
edgeR
heatmaps
PCA
R
2.7 years ago
Björn
• 40
• updated 2.5 years ago
zx8754
7.5k
9
Votes
3
Replies
596
Views
Is it possible to make a PCA plot for samples using TPM exprssion values in R?
RNA-Seq
PCA
TPM
2.5 years ago
rimgubaev
• 120
• updated 2.5 years ago
andrew.j.skelton73
5.7k
0
Votes
5
Replies
416
Views
Few SNPs after merging my samples with 1000G phase 3
1000G
pca
SNP
2.5 years ago
Phoenix Mu
• 0
1
Vote
1
Reply
561
Views
How to reproduce MATLAB tsne('algorithm', 'exact') result in R?
tsne
pca
R
Rtsne
matlab
2.5 years ago
mk
• 90
3
Votes
3
Replies
343
Views
Confusion About Observations vs. Variables in my Data
R
RNA-Seq
k-means
pca
beginner
2.5 years ago
Ark
• 70
• updated 2.5 years ago
RamRS
21k
1
Vote
2
Replies
345
Views
Probabilistic PCA on very sparse SNP matrix
pca
probabilistic pca
snpmatrix
snpstats
2.7 years ago
dominicdhall
• 40
• updated 2.6 years ago
Biostar
20
2
Votes
4
Replies
6.4k
Views
Scale and Center [normalized] RNA-seq expression counts for PCA ?
RNA-Seq
pca
R
sequencing
genome
6.0 years ago
gaelgarcia
• 140
• updated 2.6 years ago
Kevin Blighe
43k
4
Votes
6
Replies
1.7k
Views
PCA Analysis Direction
R
gene
Microarray
Python
PCA
4.6 years ago
Steve
• 10
• updated 2.6 years ago
Biostar
20
2
Votes
2
Replies
741
Views
PCA implementation in plink
Plink
PCA
population
2.6 years ago
prasundutta87
• 330
• updated 2.6 years ago
chrchang523
5.2k
4
Votes
6
Replies
792
Views
PCA analysis for beginners
ngs
R
sequencing
PCA
vcf
2.6 years ago
Bella_p
• 50
• updated 2.6 years ago
zx8754
7.5k
2
Votes
1
Reply
404
Views
What values should I use for principle component analysis of microarray data?
microarray
PCA
R
2.6 years ago
reubenmcgregor88
• 40
• updated 2.6 years ago
Kevin Blighe
43k
185 results • Page
1 of 4
Recent Votes
Phyla Amphora2 test problem
Phyla Amphora2 test problem
Comment: Testing image upload
Testing spam
Random SNPs simulation?
How do play audio (playsound) in background of Python script?
A: Random SNPs simulation?
Biostar Forum Posting Guidelines
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Recent Locations
• All
University Park,
4 days ago
Irving, Dallas,
6 days ago
3303 Crossroads Dr Longview, TX 75605 United States,
7 days ago
India,
7 days ago
3000 Grapevine Mills Pkwy Suite 329-20, Grapevine, TX 76051, United States,
10 days ago
Recent Awards
• All
Appreciated
to
lieven.sterck
5.1k
Commentator
to
maegsul
• 140
Appreciated
to
Sej Modha
4.2k
Appreciated
to
Sej Modha
4.2k
Appreciated
to
Sej Modha
4.2k
Appreciated
to
Sej Modha
4.2k
Appreciated
to
finswimmer
11k
Appreciated
to
finswimmer
11k
Appreciated
to
finswimmer
11k
Appreciated
to
finswimmer
11k
Recent Replies
Answer: Phyla Amphora2 test problem
by
William
• 0
I'm happy I found this web site, I couldn't find any information on this matter prior to. Also, work a site and if you are ever interested …
Answer: Gene Id Conversion Tool
by
Mike
• 0
HELLO TEST TEXT
Comment: Biostar Forum Posting Guidelines
by
parameshparamu28
• 0
[Java Training in Hyderabad][1] .Java is a class-based, object-oriented programming language that is designed to have as few implementatio…
Answer: Biostar Forum Posting Guidelines
by
parameshparamu28
• 0
[Java Training in Hyderabad][1] .Java is a class-based, object-oriented programming language that is designed to have as few implementati…
Answer: Biostar Forum Posting Guidelines
by
thakrarnisha6
• 0
Thanks for sharing it, [rajkot it company][1] [1]: https://www.inventive9.com/it-company-in-rajkot/
Answer: Testing recipe link
by
khosango
• 0
can't see it hiim ducking from [san go][1] [1]: https://www.khosango.com/
Comment: Python and data science course training Hyderabad
by
Datasciencekphp
• 0
Hi Good evening! Thanks for sharing such nice information about your blog. https://socialprachar.com/data-science/
Comment: Meta: Markdown in Biostars (now enabled)
by
Arup Ghosh
♦ 1.3k
@arup take a look at this.
Answer: Biostar Forum Posting Guidelines
by
макс
• 0
[LD Blue][1] is a light cigarette. The cigarette contains: resin - 6 mg, nicotine - 0.4 mg. There are 20 cigarettes in the pack. The struc…
Answer: Biostar Forum Posting Guidelines
by
sapopi3741
• 0
@Tom Koerber6
Comment: Biostar Forum Posting Guidelines
by
Arup Ghosh
♦ 1.3k
@arup @Tom Koerber6 @Biostar1
Answer: Biostar Forum Posting Guidelines
by
Arup Ghosh
♦ 1.3k
@Tom Koerber6
Comment: Biostar Forum Posting Guidelines
by
Arup Ghosh
♦ 1.3k
@Zhenhai Zhang5
Answer: Biostar Forum Posting Guidelines
by
Arup Ghosh
♦ 1.3k
@Test3895
Answer: Biostar Forum Posting Guidelines
by
Arup Ghosh
♦ 1.3k
This a test answer.
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.3