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Showing : Mapping • reset
5
Votes
2
Replies
182
Views
Necessary to filter out nanopore (or PacBio) reads before mapping?
nanopore minimap2 alignment mapping
13 months ago
BioinformaticsLad • 120 • updated 13 months ago
Biostar 20
1
Vote
1
Reply
105
Views
Mapping soft for de novo assembly
RNA-Seq Assembly Mapping
13 months ago
scheme4193 • 0
3
Votes
3
Replies
202
Views
BWA mapping to multiple reference genome
bwa multiple reference mapping
13 months ago
gerrybio2010 • 0 • updated 13 months ago
swbarnes2 5.7k
13
Votes
10
Replies
380
Views
Is there a HGNC symbol or any ENSEMBLE/RefSeq ID for this UniProt : Rheumatoid factor C6 light chain?
gene mapping HGNC UniProt Ensembl
14 months ago
ivivek_ngs ♦ 4.8k • updated 14 months ago
Elisabeth Gasteiger ♦ 1.6k
1
Vote
9
Replies
222
Views
Bowtie2 Error: Saw ASCII character 10 but expected 33-based Phred qual
Bowtie2 mapping Transcriptom
14 months ago
jaqx008 • 40
0
Votes
3
Replies
174
Views
Extract Consensus Sequence from DIAMOND
alignment Assembly sequencing mapping
14 months ago
c.pouchon • 0
2
Votes
11
Replies
7.8k
Views
Tophat Rna-Seq Mapping Quality
tophat rna-seq mapping quality
7.2 years ago
siyu • 130 • updated 14 months ago
Biostar 20
0
Votes
0
Replies
118
Views
Cytoscape map for protein protein interactions
gene mapping protein interactions proteomics
14 months ago
suprama • 0 • updated 14 months ago
Biostar 20
3
Votes
5
Replies
180
Views
Identification of 5' Bias. How do I do this?
G-bias mapping Genome smallRNAs
14 months ago
jaqx008 • 40 • updated 14 months ago
h.mon 25k
9
Votes
13
Replies
261
Views
Python Script to map reads to reference sequence
sequence python mapping script reference sequence
14 months ago
Fido • 10
0
Votes
1
Reply
149
Views
Samtools mpileup - Sudden decrease of coverage at homopolymer regions
samtools mapping mpileup
14 months ago
Louis Kok • 10 • updated 14 months ago
Kevin Blighe 43k
0
Votes
2
Replies
149
Views
Mapping of metagenomic reads on genomes - length criteria ?
mapping
14 months ago
lagartija • 60
5
Votes
5
Replies
200
Views
bowtie --best, what exactly does it mean?
bowtie RNA-Seq mapping
14 months ago
slapiiv • 20 • updated 14 months ago
Charles Warden 6.8k
0
Votes
3
Replies
192
Views
conversion of gene ids into ensembl id
conversion annotation. mapping
14 months ago
fatimarasool135 • 20 • updated 14 months ago
jean.elbers ♦ 1.1k
206
Votes
33
Replies
237k
Views
Gene Id Conversion Tool
mapping conversion
10.7 years ago
Renee • 570 • updated 14 months ago
fatimarasool135 • 20
0
Votes
10
Replies
191
Views
Bowtie2 alignment scores for reads that "go beyond" the end of the reference
alignment mapping Bowtie2
14 months ago
matthias • 0
0
Votes
4
Replies
260
Views
Partial amplicon region missing from mapping data
mapping virus bwa igv
15 months ago
Vijay Lakhujani 4.1k • updated 15 months ago
swbarnes2 5.7k
0
Votes
3
Replies
189
Views
How to find all the region where one read is mapped in a bam file
NGS SAMTOOLS DNA Mapping sequencing
15 months ago
prasoongama • 0 • updated 15 months ago
WouterDeCoster 39k
1
Vote
4
Replies
261
Views
Filtering BAM file to include PE reads that did not map, even though their mate did
BAM samtools filter mapping read
15 months ago
nute11a • 0 • updated 15 months ago
Istvan Albert 87k
5
Votes
6
Replies
234
Views
Checking MAPQ=255 (unique mapping) interpretation
mapping sam
15 months ago
BioinformaticsLad • 120 • updated 15 months ago
Devon Ryan 90k
3
Votes
2
Replies
198
Views
How to use BBMap's reformat.sh to correctly interleaved reads?
genome mapping next-gen fastq
15 months ago
O.rka • 110 • updated 15 months ago
h.mon 25k
1
Vote
4
Replies
227
Views
Low Mapping percentage with Minimap2 due to contamination
reference genome Minimap2 Mapping Nanopore
15 months ago
rah • 20
3
Votes
11
Replies
350
Views
How to calculate percent identity from sam file?
mapping assembly sam samtools cigar
15 months ago
O.rka • 110
1
Vote
1
Reply
167
Views
Are there any tools that can create a very basic GTF file from contig sequences (no annotations really needed) ?
Assembly mapping
15 months ago
O.rka • 110
0
Votes
4
Replies
179
Views
Retrieving an operon from scaffolds : Prokaryotic Genome
scaffold SNP mapping
15 months ago
venuraherath • 20 • updated 15 months ago
pltbiotech_tkarthi • 170
1
Vote
1
Reply
307
Views
What dose this error of hisat2 mean? - (ERR): hisat2-align died with signal 11 (SEGV)
rna-seq HISAT2 mapping
15 months ago
tyaoi2 • 10 • updated 15 months ago
genomax 68k
1
Vote
5
Replies
237
Views
If I have a hybrid yeast strain sequenced, is it okay to use saccer3 as reference sequence for mapping?
yeast mapping saccer3 hybrid reference sequence
16 months ago
ptlrushabh • 0 • updated 16 months ago
Carambakaracho ♦ 1.2k
2
Votes
10
Replies
287
Views
Percent reads mapped in Picard
reads mapping next-generation sequencing picard
16 months ago
phylofun • 10
1
Vote
1
Reply
221
Views
How can I get the ATC codes of approved drugs in drugbank?
drugbank ATC mapping Drug
16 months ago
Ali Jam • 10
0
Votes
0
Replies
147
Views
Looking for recommendation: What tool can I use to reliably generate Transposable elements from a Genome?
TE mapping Repeat elements
16 months ago
jaqx008 • 40
0
Votes
0
Replies
175
Views
Repetitive DNA: Are representative nHMMs from an Illumina read mapping a good idea?
next-gen alignment HMM mapping repetitive DNA
16 months ago
toheitka • 230
0
Votes
0
Replies
182
Views
segemehl installation problem
RNA-Seq mapping segemehl installation
16 months ago
kagan.ferenc • 0
1
Vote
2
Replies
200
Views
Looking for Recommendations: whole Adult male Danio rerio RNAseq data
RNA-Seq mapping SRA DanioRerio
16 months ago
jaqx008 • 40
1
Vote
3
Replies
220
Views
Get the divergence between two species with a ref genome and reads
Assembly vcf mapping
16 months ago
maxime.policarpo • 50
2
Votes
2
Replies
246
Views
mate_not_found ValidateSam (picardtools) error
alignment bwa mapping picard
17 months ago
emi.trucchi • 20 • updated 17 months ago
finswimmer 11k
13
Votes
10
Replies
604
Views
STAR or Bowtie for small RNA seq?
RNA-Seq mapping reads sequencing
17 months ago
max_19 • 100 • updated 17 months ago
Bastien Hervé 4.2k
1
Vote
10
Replies
319
Views
Incompatibility issue with fasta and GFF (fasta2GFF)
fasta2gff mapping bedtools
17 months ago
jaqx008 • 40
0
Votes
8
Replies
230
Views
Is there any open-source Illumina bacterial genome mapping and annotation website?
software mapping open source service annotation
17 months ago
bioinf_ukraine • 0 • updated 17 months ago
h.mon 25k
0
Votes
4
Replies
253
Views
Simultaneous multiple read recruitment with BBMap?
BBMap mapping
17 months ago
Rebecs Garner • 0
0
Votes
2
Replies
490
Views
How to map RNA-seq with hisat2, stringtie, an assembly fasta, a gtf file, and a transcript fasta?
hisat2 mapping transcriptome stringtie
17 months ago
O.rka • 110 • updated 17 months ago
swbarnes2 5.7k
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