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561 results • Page
1 of 12
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Replies
Showing :
Mapping
•
reset
206
Votes
34
Replies
237k
Views
29 follow
Gene Id Conversion Tool
mapping
conversion
11.4 years ago
Renee
• 570
• updated 21 days ago
Mike
• 0
5
Votes
2
Replies
202
Views
Necessary to filter out nanopore (or PacBio) reads before mapping?
nanopore
minimap2
alignment
mapping
21 months ago
BioinformaticsLad
• 120
• updated 21 months ago
Biostar
20
1
Vote
1
Reply
110
Views
Mapping soft for de novo assembly
RNA-Seq
Assembly
Mapping
21 months ago
scheme4193
• 0
3
Votes
3
Replies
208
Views
BWA mapping to multiple reference genome
bwa
multiple reference
mapping
21 months ago
gerrybio2010
• 0
• updated 21 months ago
swbarnes2
5.7k
13
Votes
10
Replies
407
Views
Is there a HGNC symbol or any ENSEMBLE/RefSeq ID for this UniProt : Rheumatoid factor C6 light chain?
gene
mapping
HGNC
UniProt
Ensembl
22 months ago
ivivek_ngs
♦ 4.8k
• updated 22 months ago
Elisabeth Gasteiger
♦ 1.6k
1
Vote
9
Replies
235
Views
Bowtie2 Error: Saw ASCII character 10 but expected 33-based Phred qual
Bowtie2
mapping
Transcriptom
22 months ago
jaqx008
• 40
0
Votes
3
Replies
177
Views
Extract Consensus Sequence from DIAMOND
alignment
Assembly
sequencing
mapping
22 months ago
c.pouchon
• 0
2
Votes
11
Replies
7.8k
Views
Tophat Rna-Seq Mapping Quality
tophat
rna-seq
mapping
quality
7.9 years ago
siyu
• 130
• updated 22 months ago
Biostar
20
0
Votes
0
Replies
126
Views
Cytoscape map for protein protein interactions
gene
mapping
protein
interactions
proteomics
22 months ago
suprama
• 0
• updated 22 months ago
Biostar
20
3
Votes
5
Replies
185
Views
Identification of 5' Bias. How do I do this?
G-bias
mapping
Genome
smallRNAs
22 months ago
jaqx008
• 40
• updated 22 months ago
h.mon
25k
9
Votes
13
Replies
272
Views
Python Script to map reads to reference sequence
sequence
python
mapping
script
reference sequence
22 months ago
Fido
• 10
0
Votes
1
Reply
154
Views
Samtools mpileup - Sudden decrease of coverage at homopolymer regions
samtools
mapping
mpileup
22 months ago
Louis Kok
• 10
• updated 22 months ago
Kevin Blighe
43k
0
Votes
2
Replies
156
Views
Mapping of metagenomic reads on genomes - length criteria ?
mapping
22 months ago
lagartija
• 60
5
Votes
5
Replies
205
Views
bowtie --best, what exactly does it mean?
bowtie
RNA-Seq
mapping
22 months ago
slapiiv
• 20
• updated 22 months ago
Charles Warden
6.8k
0
Votes
3
Replies
200
Views
conversion of gene ids into ensembl id
conversion
annotation.
mapping
22 months ago
fatimarasool135
• 20
• updated 22 months ago
jean.elbers
♦ 1.1k
0
Votes
10
Replies
196
Views
Bowtie2 alignment scores for reads that "go beyond" the end of the reference
alignment
mapping
Bowtie2
22 months ago
matthias
• 0
0
Votes
4
Replies
266
Views
Partial amplicon region missing from mapping data
mapping
virus
bwa
igv
23 months ago
Vijay Lakhujani
4.1k
• updated 23 months ago
swbarnes2
5.7k
0
Votes
3
Replies
194
Views
How to find all the region where one read is mapped in a bam file
NGS
SAMTOOLS
DNA
Mapping
sequencing
23 months ago
prasoongama
• 0
• updated 23 months ago
WouterDeCoster
39k
1
Vote
4
Replies
274
Views
Filtering BAM file to include PE reads that did not map, even though their mate did
BAM
samtools
filter
mapping
read
23 months ago
nute11a
• 0
• updated 23 months ago
Istvan Albert
87k
5
Votes
6
Replies
238
Views
Checking MAPQ=255 (unique mapping) interpretation
mapping
sam
23 months ago
BioinformaticsLad
• 120
• updated 23 months ago
Devon Ryan
90k
3
Votes
2
Replies
204
Views
How to use BBMap's reformat.sh to correctly interleaved reads?
genome
mapping
next-gen
fastq
23 months ago
O.rka
• 110
• updated 23 months ago
h.mon
25k
1
Vote
4
Replies
235
Views
Low Mapping percentage with Minimap2 due to contamination
reference genome
Minimap2
Mapping
Nanopore
23 months ago
rah
• 20
3
Votes
11
Replies
357
Views
How to calculate percent identity from sam file?
mapping
assembly
sam
samtools
cigar
23 months ago
O.rka
• 110
1
Vote
1
Reply
173
Views
Are there any tools that can create a very basic GTF file from contig sequences (no annotations really needed) ?
Assembly
mapping
23 months ago
O.rka
• 110
0
Votes
4
Replies
193
Views
Retrieving an operon from scaffolds : Prokaryotic Genome
scaffold
SNP
mapping
23 months ago
venuraherath
• 20
• updated 23 months ago
pltbiotech_tkarthi
• 170
1
Vote
1
Reply
311
Views
What dose this error of hisat2 mean? - (ERR): hisat2-align died with signal 11 (SEGV)
rna-seq
HISAT2
mapping
23 months ago
tyaoi2
• 10
• updated 23 months ago
genomax
68k
1
Vote
5
Replies
252
Views
If I have a hybrid yeast strain sequenced, is it okay to use saccer3 as reference sequence for mapping?
yeast
mapping
saccer3
hybrid
reference sequence
24 months ago
ptlrushabh
• 0
• updated 24 months ago
Carambakaracho
♦ 1.2k
2
Votes
10
Replies
301
Views
Percent reads mapped in Picard
reads
mapping
next-generation sequencing
picard
24 months ago
phylofun
• 10
1
Vote
1
Reply
223
Views
How can I get the ATC codes of approved drugs in drugbank?
drugbank
ATC
mapping
Drug
24 months ago
Ali Jam
• 10
0
Votes
0
Replies
151
Views
Looking for recommendation: What tool can I use to reliably generate Transposable elements from a Genome?
TE
mapping
Repeat elements
24 months ago
jaqx008
• 40
0
Votes
0
Replies
180
Views
Repetitive DNA: Are representative nHMMs from an Illumina read mapping a good idea?
next-gen
alignment
HMM
mapping
repetitive DNA
2.0 years ago
toheitka
• 230
0
Votes
0
Replies
189
Views
segemehl installation problem
RNA-Seq
mapping
segemehl
installation
2.0 years ago
kagan.ferenc
• 0
1
Vote
2
Replies
203
Views
Looking for Recommendations: whole Adult male Danio rerio RNAseq data
RNA-Seq
mapping
SRA
DanioRerio
2.0 years ago
jaqx008
• 40
1
Vote
3
Replies
224
Views
Get the divergence between two species with a ref genome and reads
Assembly
vcf
mapping
2.0 years ago
maxime.policarpo
• 50
2
Votes
2
Replies
250
Views
mate_not_found ValidateSam (picardtools) error
alignment
bwa
mapping
picard
2.1 years ago
emi.trucchi
• 20
• updated 2.1 years ago
finswimmer
11k
13
Votes
10
Replies
608
Views
STAR or Bowtie for small RNA seq?
RNA-Seq
mapping
reads
sequencing
2.1 years ago
max_19
• 100
• updated 2.1 years ago
Bastien Hervé
4.2k
1
Vote
10
Replies
328
Views
Incompatibility issue with fasta and GFF (fasta2GFF)
fasta2gff
mapping
bedtools
2.1 years ago
jaqx008
• 40
0
Votes
8
Replies
237
Views
Is there any open-source Illumina bacterial genome mapping and annotation website?
software
mapping
open source
service
annotation
2.1 years ago
bioinf_ukraine
• 0
• updated 2.1 years ago
h.mon
25k
0
Votes
4
Replies
256
Views
Simultaneous multiple read recruitment with BBMap?
BBMap
mapping
2.1 years ago
Rebecs Garner
• 0
0
Votes
2
Replies
493
Views
How to map RNA-seq with hisat2, stringtie, an assembly fasta, a gtf file, and a transcript fasta?
hisat2
mapping
transcriptome
stringtie
2.1 years ago
O.rka
• 110
• updated 2.1 years ago
swbarnes2
5.7k
0
Votes
6
Replies
281
Views
Reads not getting mapped to reference genome
mapping
Bowtie
de novo assembly
whole genome
2.1 years ago
manjumoorthy95
• 10
3
Votes
2
Replies
1.9k
Views
Does The Mapping Of A Read'S Pair Affect Its Own Mapping Score In Bwa?
bwa
mapping
paired-end
7.1 years ago
jhrf
• 10
• updated 2.1 years ago
Biostar
20
1
Vote
3
Replies
228
Views
MySQL: Mapping GRCh38 coordinates to GRCh37 using ensembldb
ensembl
MySQL
Assembly
mapping
2.1 years ago
badredda
• 100
• updated 2.1 years ago
Pierre Lindenbaum
120k
7
Votes
4
Replies
2.1k
Views
Resources To Batch Map Long Gene Names To Entrez Ids?
gene
mapping
list
identifiers
9.4 years ago
Walter Jessen
• 90
• updated 2.1 years ago
Biostar
20
1
Vote
1
Reply
2.1k
Views
Map Uniprot On Genomic Coordinates (Eg. Hg19)
coordinates
mapping
uniprot
8.8 years ago
jirivoller
• 10
• updated 2.1 years ago
Biostar
20
7
Votes
4
Replies
307
Views
Best way of Merging Multiple Lanes generated by HiSeq 2000, index BAM or VCF?
wgs
illumina
HiSeq
SAM
Mapping
2.1 years ago
venuraherath
• 20
3
Votes
6
Replies
498
Views
Python Programmatically obtaining the corresponding wildtype DNA sequence of a RefSeq Protein Identifier (e.g WP_016693432.1)
dna
database
mapping
Refseq
transcript
2.6 years ago
ahir29
• 10
• updated 2.2 years ago
Biostar
20
0
Votes
4
Replies
388
Views
How to interpret a read hit with IGV?
alignment
IGV
mapping
interpretation
2.3 years ago
marongiu.luigi
• 380
• updated 2.3 years ago
Biostar
20
6
Votes
4
Replies
332
Views
How to extract mapping features of multiple samples in one output?
bowtie2
mapping
multiqc
ChIP-Seq
RNA-Seq
2.3 years ago
star
• 150
• updated 2.3 years ago
h.mon
25k
4
Votes
12
Replies
497
Views
Hidden reads in IGV
mapping
IGV
visualization
read quality
2.3 years ago
marongiu.luigi
• 380
• updated 2.3 years ago
Santosh Anand
4.8k
561 results • Page
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