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Showing : Mapping • reset
206
Votes
34
Replies
237k
Views
29 follow
Gene Id Conversion Tool
mapping conversion
11.4 years ago
Renee • 570 • updated 21 days ago
Mike • 0
5
Votes
2
Replies
202
Views
Necessary to filter out nanopore (or PacBio) reads before mapping?
nanopore minimap2 alignment mapping
21 months ago
BioinformaticsLad • 120 • updated 21 months ago
Biostar 20
1
Vote
1
Reply
110
Views
Mapping soft for de novo assembly
RNA-Seq Assembly Mapping
21 months ago
scheme4193 • 0
3
Votes
3
Replies
208
Views
BWA mapping to multiple reference genome
bwa multiple reference mapping
21 months ago
gerrybio2010 • 0 • updated 21 months ago
swbarnes2 5.7k
13
Votes
10
Replies
407
Views
Is there a HGNC symbol or any ENSEMBLE/RefSeq ID for this UniProt : Rheumatoid factor C6 light chain?
gene mapping HGNC UniProt Ensembl
22 months ago
ivivek_ngs ♦ 4.8k • updated 22 months ago
Elisabeth Gasteiger ♦ 1.6k
1
Vote
9
Replies
235
Views
Bowtie2 Error: Saw ASCII character 10 but expected 33-based Phred qual
Bowtie2 mapping Transcriptom
22 months ago
jaqx008 • 40
0
Votes
3
Replies
177
Views
Extract Consensus Sequence from DIAMOND
alignment Assembly sequencing mapping
22 months ago
c.pouchon • 0
2
Votes
11
Replies
7.8k
Views
Tophat Rna-Seq Mapping Quality
tophat rna-seq mapping quality
7.9 years ago
siyu • 130 • updated 22 months ago
Biostar 20
0
Votes
0
Replies
126
Views
Cytoscape map for protein protein interactions
gene mapping protein interactions proteomics
22 months ago
suprama • 0 • updated 22 months ago
Biostar 20
3
Votes
5
Replies
185
Views
Identification of 5' Bias. How do I do this?
G-bias mapping Genome smallRNAs
22 months ago
jaqx008 • 40 • updated 22 months ago
h.mon 25k
9
Votes
13
Replies
272
Views
Python Script to map reads to reference sequence
sequence python mapping script reference sequence
22 months ago
Fido • 10
0
Votes
1
Reply
154
Views
Samtools mpileup - Sudden decrease of coverage at homopolymer regions
samtools mapping mpileup
22 months ago
Louis Kok • 10 • updated 22 months ago
Kevin Blighe 43k
0
Votes
2
Replies
156
Views
Mapping of metagenomic reads on genomes - length criteria ?
mapping
22 months ago
lagartija • 60
5
Votes
5
Replies
205
Views
bowtie --best, what exactly does it mean?
bowtie RNA-Seq mapping
22 months ago
slapiiv • 20 • updated 22 months ago
Charles Warden 6.8k
0
Votes
3
Replies
200
Views
conversion of gene ids into ensembl id
conversion annotation. mapping
22 months ago
fatimarasool135 • 20 • updated 22 months ago
jean.elbers ♦ 1.1k
0
Votes
10
Replies
196
Views
Bowtie2 alignment scores for reads that "go beyond" the end of the reference
alignment mapping Bowtie2
22 months ago
matthias • 0
0
Votes
4
Replies
266
Views
Partial amplicon region missing from mapping data
mapping virus bwa igv
23 months ago
Vijay Lakhujani 4.1k • updated 23 months ago
swbarnes2 5.7k
0
Votes
3
Replies
194
Views
How to find all the region where one read is mapped in a bam file
NGS SAMTOOLS DNA Mapping sequencing
23 months ago
prasoongama • 0 • updated 23 months ago
WouterDeCoster 39k
1
Vote
4
Replies
274
Views
Filtering BAM file to include PE reads that did not map, even though their mate did
BAM samtools filter mapping read
23 months ago
nute11a • 0 • updated 23 months ago
Istvan Albert 87k
5
Votes
6
Replies
238
Views
Checking MAPQ=255 (unique mapping) interpretation
mapping sam
23 months ago
BioinformaticsLad • 120 • updated 23 months ago
Devon Ryan 90k
3
Votes
2
Replies
204
Views
How to use BBMap's reformat.sh to correctly interleaved reads?
genome mapping next-gen fastq
23 months ago
O.rka • 110 • updated 23 months ago
h.mon 25k
1
Vote
4
Replies
235
Views
Low Mapping percentage with Minimap2 due to contamination
reference genome Minimap2 Mapping Nanopore
23 months ago
rah • 20
3
Votes
11
Replies
357
Views
How to calculate percent identity from sam file?
mapping assembly sam samtools cigar
23 months ago
O.rka • 110
1
Vote
1
Reply
173
Views
Are there any tools that can create a very basic GTF file from contig sequences (no annotations really needed) ?
Assembly mapping
23 months ago
O.rka • 110
0
Votes
4
Replies
193
Views
Retrieving an operon from scaffolds : Prokaryotic Genome
scaffold SNP mapping
23 months ago
venuraherath • 20 • updated 23 months ago
pltbiotech_tkarthi • 170
1
Vote
1
Reply
311
Views
What dose this error of hisat2 mean? - (ERR): hisat2-align died with signal 11 (SEGV)
rna-seq HISAT2 mapping
23 months ago
tyaoi2 • 10 • updated 23 months ago
genomax 68k
1
Vote
5
Replies
252
Views
If I have a hybrid yeast strain sequenced, is it okay to use saccer3 as reference sequence for mapping?
yeast mapping saccer3 hybrid reference sequence
24 months ago
ptlrushabh • 0 • updated 24 months ago
Carambakaracho ♦ 1.2k
2
Votes
10
Replies
301
Views
Percent reads mapped in Picard
reads mapping next-generation sequencing picard
24 months ago
phylofun • 10
1
Vote
1
Reply
223
Views
How can I get the ATC codes of approved drugs in drugbank?
drugbank ATC mapping Drug
24 months ago
Ali Jam • 10
0
Votes
0
Replies
151
Views
Looking for recommendation: What tool can I use to reliably generate Transposable elements from a Genome?
TE mapping Repeat elements
24 months ago
jaqx008 • 40
0
Votes
0
Replies
180
Views
Repetitive DNA: Are representative nHMMs from an Illumina read mapping a good idea?
next-gen alignment HMM mapping repetitive DNA
2.0 years ago
toheitka • 230
0
Votes
0
Replies
189
Views
segemehl installation problem
RNA-Seq mapping segemehl installation
2.0 years ago
kagan.ferenc • 0
1
Vote
2
Replies
203
Views
Looking for Recommendations: whole Adult male Danio rerio RNAseq data
RNA-Seq mapping SRA DanioRerio
2.0 years ago
jaqx008 • 40
1
Vote
3
Replies
224
Views
Get the divergence between two species with a ref genome and reads
Assembly vcf mapping
2.0 years ago
maxime.policarpo • 50
2
Votes
2
Replies
250
Views
mate_not_found ValidateSam (picardtools) error
alignment bwa mapping picard
2.1 years ago
emi.trucchi • 20 • updated 2.1 years ago
finswimmer 11k
13
Votes
10
Replies
608
Views
STAR or Bowtie for small RNA seq?
RNA-Seq mapping reads sequencing
2.1 years ago
max_19 • 100 • updated 2.1 years ago
Bastien Hervé 4.2k
1
Vote
10
Replies
328
Views
Incompatibility issue with fasta and GFF (fasta2GFF)
fasta2gff mapping bedtools
2.1 years ago
jaqx008 • 40
0
Votes
8
Replies
237
Views
Is there any open-source Illumina bacterial genome mapping and annotation website?
software mapping open source service annotation
2.1 years ago
bioinf_ukraine • 0 • updated 2.1 years ago
h.mon 25k
0
Votes
4
Replies
256
Views
Simultaneous multiple read recruitment with BBMap?
BBMap mapping
2.1 years ago
Rebecs Garner • 0
0
Votes
2
Replies
493
Views
How to map RNA-seq with hisat2, stringtie, an assembly fasta, a gtf file, and a transcript fasta?
hisat2 mapping transcriptome stringtie
2.1 years ago
O.rka • 110 • updated 2.1 years ago
swbarnes2 5.7k
0
Votes
6
Replies
281
Views
Reads not getting mapped to reference genome
mapping Bowtie de novo assembly whole genome
2.1 years ago
manjumoorthy95 • 10
3
Votes
2
Replies
1.9k
Views
Does The Mapping Of A Read'S Pair Affect Its Own Mapping Score In Bwa?
bwa mapping paired-end
7.1 years ago
jhrf • 10 • updated 2.1 years ago
Biostar 20
1
Vote
3
Replies
228
Views
MySQL: Mapping GRCh38 coordinates to GRCh37 using ensembldb
ensembl MySQL Assembly mapping
2.1 years ago
badredda • 100 • updated 2.1 years ago
Pierre Lindenbaum 120k
7
Votes
4
Replies
2.1k
Views
Resources To Batch Map Long Gene Names To Entrez Ids?
gene mapping list identifiers
9.4 years ago
Walter Jessen • 90 • updated 2.1 years ago
Biostar 20
1
Vote
1
Reply
2.1k
Views
Map Uniprot On Genomic Coordinates (Eg. Hg19)
coordinates mapping uniprot
8.8 years ago
jirivoller • 10 • updated 2.1 years ago
Biostar 20
7
Votes
4
Replies
307
Views
Best way of Merging Multiple Lanes generated by HiSeq 2000, index BAM or VCF?
wgs illumina HiSeq SAM Mapping
2.1 years ago
venuraherath • 20
3
Votes
6
Replies
498
Views
Python Programmatically obtaining the corresponding wildtype DNA sequence of a RefSeq Protein Identifier (e.g WP_016693432.1)
dna database mapping Refseq transcript
2.6 years ago
ahir29 • 10 • updated 2.2 years ago
Biostar 20
0
Votes
4
Replies
388
Views
How to interpret a read hit with IGV?
alignment IGV mapping interpretation
2.3 years ago
marongiu.luigi • 380 • updated 2.3 years ago
Biostar 20
6
Votes
4
Replies
332
Views
How to extract mapping features of multiple samples in one output?
bowtie2 mapping multiqc ChIP-Seq RNA-Seq
2.3 years ago
star • 150 • updated 2.3 years ago
h.mon 25k
4
Votes
12
Replies
497
Views
Hidden reads in IGV
mapping IGV visualization read quality
2.3 years ago
marongiu.luigi • 380 • updated 2.3 years ago
Santosh Anand 4.8k
561 results • Page 1 of 12
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