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Showing : MAF • reset
0
Votes
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130
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TCGA: Discrepancy in mutation records numbers based on data acquistion method?
R TCGA mutation MAF
21 months ago
sc • 0 • updated 21 months ago
Kevin Blighe 43k
0
Votes
1
Reply
155
Views
How to calculate base substitution mutation frequency (C>T T>A C>G T>C T>G C>A) from TCGA MAF files
TCGA MAF SNP
21 months ago
Mike ♦ 1.3k • updated 21 months ago
Martina • 10
0
Votes
0
Replies
147
Views
View MAF file and the reference sequence in a genome viewer/annotator along with SAM/BAM?
SAM BAM MAF viewer
22 months ago
DanielC • 80
6
Votes
8
Replies
413
Views
Problem with vcf2maf
maf vcf wgs path
22 months ago
F ♦ 3.4k • updated 22 months ago
RamRS 21k
1
Vote
1
Reply
177
Views
how to use existed database to filter snps in vcf with MAF
MAF
23 months ago
jiangpeng59 • 10 • updated 23 months ago
jared.andrews07 ♦ 2.4k
1
Vote
3
Replies
259
Views
Problem with .vcf annovar
vcf annovar maf
23 months ago
F ♦ 3.4k • updated 23 months ago
onemoreuser • 10
0
Votes
2
Replies
188
Views
In MAF files, does c_position is equivalent to cDNA_positions?
MAF maf genome GDC cDNA
23 months ago
mariamcurbelo2061 • 0
0
Votes
2
Replies
283
Views
bcftools / samtools, which database does the MAF function use?
bcftools samtools MAF
23 months ago
Davide Chicco • 80 • updated 23 months ago
Pierre Lindenbaum 120k
1
Vote
1
Reply
157
Views
query and export SNPs information from ensembl
ensembl snps maf
23 months ago
landivincenzo • 0 • updated 23 months ago
Ben_Ensembl • 980
3
Votes
2
Replies
415
Views
How to pass MAF file to dNdScv to detect cancer driven genes?
R dNdScv MAF mutations
2.2 years ago
Kirill Kochnev • 10 • updated 2.1 years ago
Inigo Martincorena • 170
1
Vote
4
Replies
220
Views
Annotating multiple sequence alignment
TEXshade MAF alignment
2.1 years ago
tim.ivanov.92 • 10 • updated 2.1 years ago
Asaf 5.6k
0
Votes
1
Reply
230
Views
Ensembl Biomart Allele Frequency for different ethnicity
ensembl BioMart allele frequency SNPs MAF
2.2 years ago
iside • 10
0
Votes
0
Replies
809
Views
Threshold of mutation detection in MAF Files
threshold mutation vcf MAF
4.8 years ago
solene.daude • 0 • updated 2.2 years ago
zx8754 7.5k
0
Votes
0
Replies
194
Views
IGV browser for mafFrag output
IGV mafFrag MAF
2.3 years ago
tim.ivanov.92 • 10
6
Votes
2
Replies
858
Views
Mapping mutations to TCGA samples
TCGA RNA-Seq MAF MUT
3.3 years ago
esnolli • 50 • updated 2.3 years ago
Biostar 20
3
Votes
3
Replies
771
Views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype simulation SNP MAF LD
3.2 years ago
J.F.Jiang • 750 • updated 2.3 years ago
zx8754 7.5k
0
Votes
0
Replies
378
Views
vcf2maf not generating `t_depth t_ref_count t_alt_count` columns in MAF file
vcf maf t_depth t_ref_count talt_count
2.4 years ago
Alejandro Jimenez Sanchez • 120
0
Votes
2
Replies
1.2k
Views
Problem starting and running Gmaj (MAF file viewer and manipulator)
Gmaj JRE Java MAF UCSC
5.0 years ago
Thomas Bradley • 90 • updated 2.4 years ago
RamRS 21k
6
Votes
3
Replies
1.6k
Views
Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
1000Genomes VEP MAF vcf2maf Ensembl
3.7 years ago
eurioste • 20 • updated 2.5 years ago
zx8754 7.5k
0
Votes
0
Replies
242
Views
Adding annotation tracks for multiple alignment
annotation multiple alignment MAF visualization
2.5 years ago
tim.ivanov.92 • 10
2
Votes
12
Replies
1.0k
Views
How to calculate Minor Allele Frequency (MAF) for your own population data
VCF MAF
2.5 years ago
Sudhir Jadhao • 60 • updated 2.5 years ago
Kevin Blighe 43k
0
Votes
10
Replies
1.4k
Views
ABSOLUTE MAF error
MAF ABSOLUTE
3.6 years ago
Alejandro Jimenez Sanchez • 120 • updated 2.5 years ago
kmvaldez2 • 10
1
Vote
2
Replies
526
Views
How calculate MAF from impute2 output in R
SNP maf impute2
2.7 years ago
vgenepi • 10 • updated 2.6 years ago
zx8754 7.5k
1
Vote
2
Replies
1.2k
Views
MAF to Fasta or XMFA - how does it work?
mugsy maf fasta XMFA
3.8 years ago
Joe 12k • updated 2.6 years ago
steven.davis • 10
3
Votes
4
Replies
587
Views
How to get minor allele frequencies from Exac?
exac variants allele maf api
2.6 years ago
kynnjo • 20 • updated 2.6 years ago
finswimmer 11k
1
Vote
4
Replies
2.6k
Views
Issue converting VCF to MAF using snpEff annotations
maf vcf vcf2maf snpEff
6.1 years ago
Marina Manrique ♦ 1.3k • updated 2.6 years ago
sutturka • 150
0
Votes
3
Replies
581
Views
TCGA SNP to plink
TCGA MAF PLINK
2.6 years ago
archie • 70
5
Votes
4
Replies
1.5k
Views
Running Galaxy tools locally using bx-python
MAF Galaxy bx-python Stitch MAF blocks
5.2 years ago
Thomas Bradley • 90 • updated 2.7 years ago
Biostar 20
2
Votes
1
Reply
1.2k
Views
On what strand are the mutations shown in MAF files
maf
6.4 years ago
Max • 130 • updated 2.7 years ago
Biostar 20
4
Votes
3
Replies
621
Views
Compare allele frequency of SNPs in my data to their allele frequency in different human populations - ExAC vs 1000 Genomes vs Other?
snp ExAC 1000Genomes MAF sequencing
2.8 years ago
gaelgarcia05 • 190
1
Vote
1
Reply
796
Views
Variant Control Format (VCF) TO Mutation Annotation Format (.MAF)
vcf maf
2.9 years ago
genomics Newbie • 20 • updated 2.9 years ago
adam.maikai • 480
1
Vote
3
Replies
1.1k
Views
How to convert from a .txt to a .maf file?
maf txt R TCGA bioinformatics
2.9 years ago
ksanchez1296 • 0 • updated 2.9 years ago
Kevin Blighe 43k
0
Votes
1
Reply
498
Views
Converting .maf file to .mfa file
maf mfa convert alignment
2.9 years ago
sap940 • 0
4
Votes
6
Replies
1.5k
Views
How I could get the MAF from a SNPs list?
MAF SNPs
3.0 years ago
vgenepi • 10
127
Votes
32
Replies
39k
Views
14 follow
Tutorial: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas)
mutation maf tcga cancer music Tutorial
7.9 years ago
Cyriac Kandoth 5.3k • updated 3.0 years ago
Shicheng Guo ♦ 7.5k
1
Vote
2
Replies
1.0k
Views
MAF file handling
maf mutation annotation format TCGA
3.1 years ago
khj • 0 • updated 3.1 years ago
Biostar 20
5
Votes
3
Replies
788
Views
Merging CNV data with Mutation data and running on MutSigCV
MutSigCV MAF Mutation CNV Merge
3.1 years ago
sara.younes • 20 • updated 3.1 years ago
Sean Davis 25k
4
Votes
6
Replies
1.3k
Views
How to get the simple somatic mutation vcf file from GDC data portal?
gdc mutations vcf maf tcgabiolinks
3.1 years ago
Vasu • 330
0
Votes
4
Replies
457
Views
Slide window big maf
MAF
3.3 years ago
jaimep887 • 0 • updated 3.2 years ago
Biostar 20
0
Votes
0
Replies
754
Views
Calling ASE using QuASAR without availble population allele frequency
Allele specific expression SNP VCF MAF
3.4 years ago
serpalma.v • 20 • updated 3.2 years ago
Biostar 20
0
Votes
3
Replies
679
Views
Driver gene detection with SomInaClust
maftools SomInaClust MAF
3.2 years ago
arthur.dent • 0
0
Votes
0
Replies
1.6k
Views
MAF specification TCGA : Variant_Classification
MAF TCGA variant classification
3.3 years ago
crichard • 0
31
Votes
8
Replies
2.0k
Views
Alternate nucleotide is more frequent than reference nucleotide. OMG I'm dizzy. How do I stop the twirl?
exome maf variant
3.3 years ago
Farrel • 180 • updated 3.3 years ago
Emily_Ensembl 18k
4
Votes
7
Replies
1.2k
Views
Why removing SNPs with MAF<5% for Fst calculation?
snp maf Fst
3.4 years ago
Mr Locuace • 90 • updated 3.4 years ago
Kevin Blighe 43k
0
Votes
6
Replies
1.2k
Views
The meaning of '0' allele frequency in vcftools output
vcf vcftools MAF allele frequency allele
3.4 years ago
Joel Wallenius • 10 • updated 3.4 years ago
Biostar 20
3
Votes
7
Replies
1.0k
Views
DeconstructSigs - Multiple sample size(~90 samples)
deconstructsigs maf multiple samples
3.5 years ago
David_emir • 340 • updated 3.5 years ago
VHahaut ♦ 1.1k
1
Vote
2
Replies
1.3k
Views
Extract alignment blocks of a given region from MAF file having whole genome alignments
MAF Ensembl UCSC whole genome alignment
3.5 years ago
urjaswita • 80 • updated 3.5 years ago
Emily_Ensembl 18k
0
Votes
0
Replies
726
Views
Deconstruct signature package
maf header names
3.5 years ago
David_emir • 340
0
Votes
0
Replies
609
Views
Maf to VCF file convertion, offline_cache not downloading
maf vcf
3.5 years ago
David_emir • 340
0
Votes
6
Replies
1.7k
Views
Editing vcf file using bcftools
bcftools vcf subset SNP maf
3.5 years ago
janhuang.cn • 150
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