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156 results • Page
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Showing :
MAF
•
reset
0
Votes
1
Reply
130
Views
TCGA: Discrepancy in mutation records numbers based on data acquistion method?
R
TCGA
mutation
MAF
21 months ago
sc
• 0
• updated 21 months ago
Kevin Blighe
43k
0
Votes
1
Reply
155
Views
How to calculate base substitution mutation frequency (C>T T>A C>G T>C T>G C>A) from TCGA MAF files
TCGA
MAF
SNP
21 months ago
Mike
♦ 1.3k
• updated 21 months ago
Martina
• 10
0
Votes
0
Replies
147
Views
View MAF file and the reference sequence in a genome viewer/annotator along with SAM/BAM?
SAM
BAM
MAF
viewer
22 months ago
DanielC
• 80
6
Votes
8
Replies
413
Views
Problem with vcf2maf
maf
vcf
wgs
path
22 months ago
F
♦ 3.4k
• updated 22 months ago
RamRS
21k
1
Vote
1
Reply
177
Views
how to use existed database to filter snps in vcf with MAF
MAF
23 months ago
jiangpeng59
• 10
• updated 23 months ago
jared.andrews07
♦ 2.4k
1
Vote
3
Replies
259
Views
Problem with .vcf annovar
vcf
annovar
maf
23 months ago
F
♦ 3.4k
• updated 23 months ago
onemoreuser
• 10
0
Votes
2
Replies
188
Views
In MAF files, does c_position is equivalent to cDNA_positions?
MAF
maf
genome
GDC
cDNA
23 months ago
mariamcurbelo2061
• 0
0
Votes
2
Replies
283
Views
bcftools / samtools, which database does the MAF function use?
bcftools
samtools
MAF
23 months ago
Davide Chicco
• 80
• updated 23 months ago
Pierre Lindenbaum
120k
1
Vote
1
Reply
157
Views
query and export SNPs information from ensembl
ensembl
snps
maf
23 months ago
landivincenzo
• 0
• updated 23 months ago
Ben_Ensembl
• 980
3
Votes
2
Replies
415
Views
How to pass MAF file to dNdScv to detect cancer driven genes?
R
dNdScv
MAF
mutations
2.2 years ago
Kirill Kochnev
• 10
• updated 2.1 years ago
Inigo Martincorena
• 170
1
Vote
4
Replies
220
Views
Annotating multiple sequence alignment
TEXshade
MAF
alignment
2.1 years ago
tim.ivanov.92
• 10
• updated 2.1 years ago
Asaf
5.6k
0
Votes
1
Reply
230
Views
Ensembl Biomart Allele Frequency for different ethnicity
ensembl BioMart
allele frequency
SNPs
MAF
2.2 years ago
iside
• 10
0
Votes
0
Replies
809
Views
Threshold of mutation detection in MAF Files
threshold
mutation
vcf
MAF
4.8 years ago
solene.daude
• 0
• updated 2.2 years ago
zx8754
7.5k
0
Votes
0
Replies
194
Views
IGV browser for mafFrag output
IGV
mafFrag
MAF
2.3 years ago
tim.ivanov.92
• 10
6
Votes
2
Replies
858
Views
Mapping mutations to TCGA samples
TCGA
RNA-Seq
MAF
MUT
3.3 years ago
esnolli
• 50
• updated 2.3 years ago
Biostar
20
3
Votes
3
Replies
771
Views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype
simulation
SNP
MAF
LD
3.2 years ago
J.F.Jiang
• 750
• updated 2.3 years ago
zx8754
7.5k
0
Votes
0
Replies
378
Views
vcf2maf not generating `t_depth t_ref_count t_alt_count` columns in MAF file
vcf
maf
t_depth
t_ref_count
talt_count
2.4 years ago
Alejandro Jimenez Sanchez
• 120
0
Votes
2
Replies
1.2k
Views
Problem starting and running Gmaj (MAF file viewer and manipulator)
Gmaj
JRE
Java
MAF
UCSC
5.0 years ago
Thomas Bradley
• 90
• updated 2.4 years ago
RamRS
21k
6
Votes
3
Replies
1.6k
Views
Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
1000Genomes
VEP
MAF
vcf2maf
Ensembl
3.7 years ago
eurioste
• 20
• updated 2.5 years ago
zx8754
7.5k
0
Votes
0
Replies
242
Views
Adding annotation tracks for multiple alignment
annotation
multiple alignment
MAF
visualization
2.5 years ago
tim.ivanov.92
• 10
2
Votes
12
Replies
1.0k
Views
How to calculate Minor Allele Frequency (MAF) for your own population data
VCF
MAF
2.5 years ago
Sudhir Jadhao
• 60
• updated 2.5 years ago
Kevin Blighe
43k
0
Votes
10
Replies
1.4k
Views
ABSOLUTE MAF error
MAF
ABSOLUTE
3.6 years ago
Alejandro Jimenez Sanchez
• 120
• updated 2.5 years ago
kmvaldez2
• 10
1
Vote
2
Replies
526
Views
How calculate MAF from impute2 output in R
SNP
maf
impute2
2.7 years ago
vgenepi
• 10
• updated 2.6 years ago
zx8754
7.5k
1
Vote
2
Replies
1.2k
Views
MAF to Fasta or XMFA - how does it work?
mugsy
maf
fasta
XMFA
3.8 years ago
Joe
12k
• updated 2.6 years ago
steven.davis
• 10
3
Votes
4
Replies
587
Views
How to get minor allele frequencies from Exac?
exac
variants
allele
maf
api
2.6 years ago
kynnjo
• 20
• updated 2.6 years ago
finswimmer
11k
1
Vote
4
Replies
2.6k
Views
Issue converting VCF to MAF using snpEff annotations
maf
vcf
vcf2maf
snpEff
6.1 years ago
Marina Manrique
♦ 1.3k
• updated 2.6 years ago
sutturka
• 150
0
Votes
3
Replies
581
Views
TCGA SNP to plink
TCGA
MAF
PLINK
2.6 years ago
archie
• 70
5
Votes
4
Replies
1.5k
Views
Running Galaxy tools locally using bx-python
MAF
Galaxy
bx-python
Stitch MAF blocks
5.2 years ago
Thomas Bradley
• 90
• updated 2.7 years ago
Biostar
20
2
Votes
1
Reply
1.2k
Views
On what strand are the mutations shown in MAF files
maf
6.4 years ago
Max
• 130
• updated 2.7 years ago
Biostar
20
4
Votes
3
Replies
621
Views
Compare allele frequency of SNPs in my data to their allele frequency in different human populations - ExAC vs 1000 Genomes vs Other?
snp
ExAC
1000Genomes
MAF
sequencing
2.8 years ago
gaelgarcia05
• 190
1
Vote
1
Reply
796
Views
Variant Control Format (VCF) TO Mutation Annotation Format (.MAF)
vcf
maf
2.9 years ago
genomics Newbie
• 20
• updated 2.9 years ago
adam.maikai
• 480
1
Vote
3
Replies
1.1k
Views
How to convert from a .txt to a .maf file?
maf
txt
R
TCGA
bioinformatics
2.9 years ago
ksanchez1296
• 0
• updated 2.9 years ago
Kevin Blighe
43k
0
Votes
1
Reply
498
Views
Converting .maf file to .mfa file
maf
mfa
convert
alignment
2.9 years ago
sap940
• 0
4
Votes
6
Replies
1.5k
Views
How I could get the MAF from a SNPs list?
MAF
SNPs
3.0 years ago
vgenepi
• 10
127
Votes
32
Replies
39k
Views
14 follow
Tutorial:
Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas)
mutation
maf
tcga
cancer
music
Tutorial
7.9 years ago
Cyriac Kandoth
5.3k
• updated 3.0 years ago
Shicheng Guo
♦ 7.5k
1
Vote
2
Replies
1.0k
Views
MAF file handling
maf
mutation annotation format
TCGA
3.1 years ago
khj
• 0
• updated 3.1 years ago
Biostar
20
5
Votes
3
Replies
788
Views
Merging CNV data with Mutation data and running on MutSigCV
MutSigCV
MAF
Mutation
CNV
Merge
3.1 years ago
sara.younes
• 20
• updated 3.1 years ago
Sean Davis
25k
4
Votes
6
Replies
1.3k
Views
How to get the simple somatic mutation vcf file from GDC data portal?
gdc
mutations
vcf
maf
tcgabiolinks
3.1 years ago
Vasu
• 330
0
Votes
4
Replies
457
Views
Slide window big maf
MAF
3.3 years ago
jaimep887
• 0
• updated 3.2 years ago
Biostar
20
0
Votes
0
Replies
754
Views
Calling ASE using QuASAR without availble population allele frequency
Allele specific expression
SNP
VCF
MAF
3.4 years ago
serpalma.v
• 20
• updated 3.2 years ago
Biostar
20
0
Votes
3
Replies
679
Views
Driver gene detection with SomInaClust
maftools
SomInaClust
MAF
3.2 years ago
arthur.dent
• 0
0
Votes
0
Replies
1.6k
Views
MAF specification TCGA : Variant_Classification
MAF
TCGA
variant classification
3.3 years ago
crichard
• 0
31
Votes
8
Replies
2.0k
Views
Alternate nucleotide is more frequent than reference nucleotide. OMG I'm dizzy. How do I stop the twirl?
exome
maf
variant
3.3 years ago
Farrel
• 180
• updated 3.3 years ago
Emily_Ensembl
18k
4
Votes
7
Replies
1.2k
Views
Why removing SNPs with MAF<5% for Fst calculation?
snp
maf
Fst
3.4 years ago
Mr Locuace
• 90
• updated 3.4 years ago
Kevin Blighe
43k
0
Votes
6
Replies
1.2k
Views
The meaning of '0' allele frequency in vcftools output
vcf
vcftools
MAF
allele frequency
allele
3.4 years ago
Joel Wallenius
• 10
• updated 3.4 years ago
Biostar
20
3
Votes
7
Replies
1.0k
Views
DeconstructSigs - Multiple sample size(~90 samples)
deconstructsigs
maf
multiple samples
3.5 years ago
David_emir
• 340
• updated 3.5 years ago
VHahaut
♦ 1.1k
1
Vote
2
Replies
1.3k
Views
Extract alignment blocks of a given region from MAF file having whole genome alignments
MAF
Ensembl
UCSC
whole genome alignment
3.5 years ago
urjaswita
• 80
• updated 3.5 years ago
Emily_Ensembl
18k
0
Votes
0
Replies
726
Views
Deconstruct signature package
maf
header
names
3.5 years ago
David_emir
• 340
0
Votes
0
Replies
609
Views
Maf to VCF file convertion, offline_cache not downloading
maf
vcf
3.5 years ago
David_emir
• 340
0
Votes
6
Replies
1.7k
Views
Editing vcf file using bcftools
bcftools
vcf
subset
SNP
maf
3.5 years ago
janhuang.cn
• 150
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