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Showing : GTF • reset
1
Vote
2
Replies
213
Views
Extract multi exonic genes from gtf files
RNA-Seq gtf exon
18 months ago
waqaskhokhar999 • 40
1
Vote
1
Reply
203
Views
Annotation problem while using Rsubread
annotation gtf gff
19 months ago
gokberk • 30
1
Vote
1
Reply
164
Views
GTF file in Ensembl database for RNA-Seq analysis
RNA-Seq GTF
19 months ago
wangdp123 • 150 • updated 19 months ago
Benn 6.9k
0
Votes
1
Reply
217
Views
Should I use gene_id or gene_name in featureCounts for differential expression gene analysis?
RNA-seq gtf ensembl
19 months ago
biock • 0 • updated 19 months ago
jared.andrews07 ♦ 2.4k
2
Votes
3
Replies
222
Views
Can I get the same annotation data that is in ensembl gene annotation sets through mysql?
ensembl gtf
20 months ago
endrebak • 760 • updated 20 months ago
Emily_Ensembl 18k
1
Vote
2
Replies
203
Views
Extracting sequence and annotation of a particular gene
Annotation GTF
20 months ago
Adrian Pelin ♦ 2.3k • updated 20 months ago
ATpoint 17k
11
Votes
6
Replies
4.3k
Views
How to subset a bed or gtf file to some genes of interest?
bed gtf gene genome
5.6 years ago
cyril-cros • 890 • updated 20 months ago
dimitrischat • 60
1
Vote
0
Replies
236
Views
GTF from consensus sequence
gtf gff fasta
21 months ago
lfiedlerc • 10
0
Votes
1
Reply
770
Views
same transcript id with STAR quant mode
RNA-Seq STAR gtf
3.0 years ago
grant.hovhannisyan ♦ 1.5k • updated 22 months ago
manuel.belmadani • 830
1
Vote
2
Replies
389
Views
How to repair a gff/gtf file that is missing gene id, gene name, and transcript name?
annotation alignment RNA-Seq gene gtf
22 months ago
O.rka • 110
1
Vote
1
Reply
297
Views
Homer annotatePeaks.pl custom GTF
Homer ATAC-seq GTF
22 months ago
Lucy • 0
1
Vote
3
Replies
283
Views
Add double qoutes around transcript_id in gtf file
RNA-Seq AWK GTF STRINGTie
23 months ago
BioBaby • 0 • updated 23 months ago
finswimmer 11k
0
Votes
0
Replies
273
Views
Expression data from cufflinks merged gtf
stringtie RNA-Seq bedtools gtf
24 months ago
ddowlin • 70
4
Votes
2
Replies
458
Views
what is the easiest/fastest way to convert from BAM to GTF
Bam GTF
2.1 years ago
Sam • 110 • updated 24 months ago
Biostar 20
27
Votes
11
Replies
5.1k
Views
Transform a GTF file into a data frame in R
GTF data frame RNA-Seq annotation file annotation
3.2 years ago
cristian • 220 • updated 2.0 years ago
Biostar 20
0
Votes
3
Replies
759
Views
hisat2 and RSEM pipeline
rna-seq software error hisat2 gtf RSEM
2.0 years ago
Shahzad • 10 • updated 2.0 years ago
EagleEye 6.4k
3
Votes
9
Replies
401
Views
no gene_id for tRNA in GFF3
annotation GFF3 GTF
2.1 years ago
prasundutta87 • 330
0
Votes
2
Replies
420
Views
Where to find a valid GTF file for stringtie asssembly?
gtf stringtie transcriptome
2.1 years ago
Vijay Lakhujani 4.1k • updated 2.1 years ago
Damian Kao 15k
7
Votes
7
Replies
1.6k
Views
How to rename chromosome names in GTF file?
GTF FASTA annotation genome
3.2 years ago
cristian • 220 • updated 2.2 years ago
Biostar 20
0
Votes
2
Replies
3.8k
Views
GFF3 to GTF
gff gtf
4.8 years ago
silas008 • 100 • updated 2.2 years ago
RamRS 21k
1
Vote
17
Replies
551
Views
Difference between two count table that created from same fastq files?
RNA-Seq featureCounts gtf counttable tophat
2.2 years ago
cilgaiscan • 50 • updated 2.2 years ago
h.mon 25k
0
Votes
2
Replies
671
Views
Converting fasta to gtf using reference genome
fasta gtf conversion
2.2 years ago
KI • 0 • updated 2.2 years ago
h.mon 25k
8
Votes
5
Replies
604
Views
Subset of genes with at least 1 intron larger than 5000 kbp
GTF intron_length R Bash genomicFeatures
2.2 years ago
shania90.lk • 10
2
Votes
10
Replies
1.1k
Views
problem with using gtf file in cufflinks in Galaxy
RNA-Seq GTF Cufflinks FPKM
4.5 years ago
nazaninhoseinkhan • 360 • updated 2.2 years ago
Biostar 20
16
Votes
14
Replies
10k
Views
extract only geneID and gene symbol from GTF file
genome gtf python
5.6 years ago
catherine12243 • 120 • updated 2.2 years ago
Minstein • 100
0
Votes
0
Replies
651
Views
Extract assembled transcripts from Cufflinks gtf without to use reference genome
RNA-Seq cufflinks gtf bcftools bam
3.2 years ago
marija.durdevic • 0 • updated 2.3 years ago
Biostar 20
1
Vote
3
Replies
439
Views
Create a GTF file from mapped reads
genome GTF SAF
2.3 years ago
JulianC • 10 • updated 2.3 years ago
grant.hovhannisyan ♦ 1.5k
0
Votes
5
Replies
440
Views
the track part of UCSC table browser
RNA-Seq ucsc table browser GTF
2.4 years ago
mikysyc2016 • 50 • updated 2.3 years ago
Denise - Open Targets ♦ 5.0k
3
Votes
6
Replies
1.1k
Views
Convert gff3 to gtf with R or shell
R ngs shell gff3 gtf
2.3 years ago
bioinfo8 • 120
1
Vote
3
Replies
496
Views
hg38 gtf file containing all RNAs and features
gtf annotations parser attributes bedtools
2.3 years ago
CrisMar • 70
1
Vote
2
Replies
387
Views
some questions on GFF3
GFF GTF annotation
2.3 years ago
prasundutta87 • 330
1
Vote
2
Replies
609
Views
gffread query for gff to gtf conversion
GFF GTF annotation software
2.3 years ago
prasundutta87 • 330
0
Votes
1
Reply
487
Views
gffread error when converting gff to gtf
gff gtf gffread software error
2.3 years ago
LucasK • 0 • updated 2.3 years ago
Jeffin Rockey ♦ 1.1k
3
Votes
4
Replies
557
Views
How to represent trans-spliced genes in GTF?
GTF trans-splicing File-Format
3.4 years ago
Dan • 500 • updated 2.3 years ago
Biostar 20
4
Votes
4
Replies
5.7k
Views
STAR genome index with and/or with out *.gtf annotation
STAR gtf RNA-Seq alignment bowtie
4.5 years ago
kirannbishwa01 • 1000 • updated 2.3 years ago
drskm7 • 0
4
Votes
5
Replies
436
Views
Why a gene name have more than one ensembl ID in gtf?
ensembl gtf
2.4 years ago
walker • 20 • updated 2.4 years ago
Emily_Ensembl 18k
6
Votes
4
Replies
611
Views
TopHat v2.1.1- Warning: TopHat did not find any junctions in GTF file
RNA-Seq gtf Tool
2.4 years ago
Munmun • 0 • updated 2.4 years ago
genomax 68k
1
Vote
4
Replies
429
Views
Combining two databases in gtf file, bedtools gives wierd result
bedtools gtf noncode
2.4 years ago
marina.v.yurieva • 480 • updated 2.4 years ago
Biostar 20
0
Votes
14
Replies
556
Views
Genebank to GTF recommended tool?
annotation RNA-SEQ GTF
2.4 years ago
caggtaagtat • 620
0
Votes
6
Replies
456
Views
Unknown Stringtie IDs produced when using Ensembl GTF
RNA-Seq Ensembl GTF Stringtie
2.4 years ago
freuv • 20 • updated 2.4 years ago
Emily_Ensembl 18k
1
Vote
3
Replies
1.3k
Views
Stringtie output files
RNA-Seq Stringtie GTF
2.4 years ago
chipolino • 40 • updated 2.4 years ago
Kevin Blighe 43k
11
Votes
10
Replies
647
Views
Genomic statistics from gtf
gene gtf
2.4 years ago
plebaninora • 0
6
Votes
6
Replies
800
Views
Genes with promoter and enhancer regions as GTF
ChIP-Seq featurecounts gtf promoter genes
2.5 years ago
hkarakurt • 50
5
Votes
8
Replies
851
Views
Error for reading .gtf file in R
Gene Transform Format GTF RNA-Seq refGenome
2.5 years ago
modarzi • 70 • updated 2.5 years ago
kristoffer.vittingseerup ♦ 1.8k
57
Votes
11
Replies
49k
Views
Convertion Of Gff3 To Gtf
gff gtf
8.5 years ago
geek_y 9.7k • updated 2.5 years ago
Giuseppe • 0
0
Votes
7
Replies
408
Views
getting previous exon from gtf file
R exons gtf
2.5 years ago
HK • 30
2
Votes
6
Replies
854
Views
Picking the right genome annotation for RNA-seq
RNA-Seq gtf annotation
2.6 years ago
Thomas • 30
2
Votes
5
Replies
1.2k
Views
List of TSS from GTF file
TSS GTF
2.6 years ago
Roman Hillje • 30 • updated 2.6 years ago
Alex Reynolds 28k
0
Votes
2
Replies
448
Views
cufflinks missing some annotations?
RNA-Seq transcripts GTF
2.6 years ago
Sharon • 440
3
Votes
3
Replies
731
Views
How to separate protein-coding and non-coding in gtf file
RNA-Seq gtf proteincoding noncoding lncrna
2.6 years ago
Vasu • 330 • updated 2.6 years ago
Nicolas Rosewick 7.7k
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