This site is a beta test.
Latest News Jobs Tutorials Tags Users New Post
Limit to: all time
all time today this week this month this year
248 results • Page 1 of 7
Sort by: Rank
Rank Views Votes Replies
Showing : GTF • reset
1
Vote
2
Replies
179
Views
Extract multi exonic genes from gtf files
6 months ago waqaskhokhar999 • 40
4
Votes
3
Replies
189
Views
Off topic: Convert gff.gz file to gtf
6 months ago akh5405 • 0 • updated 6 months ago Biostar 20
1
Vote
1
Reply
149
Views
Annotation problem while using Rsubread
6 months ago gokberk • 30
1
Vote
1
Reply
122
Views
GTF file in Ensembl database for RNA-Seq analysis
6 months ago wangdp123 • 150 • updated 6 months ago Benn 6.9k
0
Votes
1
Reply
183
Views
Should I use gene_id or gene_name in featureCounts for differential expression gene analysis?
7 months ago biock • 0 • updated 7 months ago jared.andrews07 ♦ 2.4k
2
Votes
3
Replies
180
Views
Can I get the same annotation data that is in ensembl gene annotation sets through mysql?
7 months ago endrebak • 760 • updated 7 months ago Emily_Ensembl 18k
1
Vote
2
Replies
163
Views
Extracting sequence and annotation of a particular gene
7 months ago Adrian Pelin ♦ 2.3k • updated 7 months ago ATpoint 17k
11
Votes
6
Replies
4.3k
Views
How to subset a bed or gtf file to some genes of interest?
4.6 years ago cyril-cros • 890 • updated 8 months ago dimitrischat • 60
1
Vote
0
Replies
203
Views
GTF from consensus sequence
8 months ago lfiedlerc • 10
0
Votes
1
Reply
735
Views
same transcript id with STAR quant mode
24 months ago grant.hovhannisyan ♦ 1.5k • updated 9 months ago manuel.belmadani • 830
1
Vote
2
Replies
362
Views
How to repair a gff/gtf file that is missing gene id, gene name, and transcript name?
9 months ago O.rka • 110
1
Vote
1
Reply
269
Views
Homer annotatePeaks.pl custom GTF
9 months ago Lucy • 0
1
Vote
3
Replies
246
Views
Add double qoutes around transcript_id in gtf file
10 months ago BioBaby • 0 • updated 10 months ago finswimmer 11k
0
Votes
0
Replies
246
Views
Expression data from cufflinks merged gtf
11 months ago ddowlin • 70
4
Votes
2
Replies
411
Views
what is the easiest/fastest way to convert from BAM to GTF
13 months ago Sam • 110 • updated 11 months ago Biostar 20
27
Votes
11
Replies
5.1k
Views
6 follow
Transform a GTF file into a data frame in R
2.2 years ago cristian • 220 • updated 12 months ago Biostar 20
0
Votes
3
Replies
706
Views
hisat2 and RSEM pipeline
12 months ago Shahzad • 10 • updated 12 months ago EagleEye 6.4k
3
Votes
9
Replies
351
Views
no gene_id for tRNA in GFF3
13 months ago prasundutta87 • 330
0
Votes
2
Replies
390
Views
Where to find a valid GTF file for stringtie asssembly?
13 months ago Vijay Lakhujani 4.1k • updated 13 months ago Damian Kao 15k
7
Votes
7
Replies
1.6k
Views
How to rename chromosome names in GTF file?
2.2 years ago cristian • 220 • updated 14 months ago Biostar 20
0
Votes
2
Replies
3.7k
Views
GFF3 to GTF
3.7 years ago silas008 • 100 • updated 14 months ago RamRS 21k
1
Vote
17
Replies
508
Views
Difference between two count table that created from same fastq files?
14 months ago cilgaiscan • 50 • updated 14 months ago h.mon 25k
0
Votes
2
Replies
648
Views
Converting fasta to gtf using reference genome
14 months ago KI • 0 • updated 14 months ago h.mon 25k
8
Votes
5
Replies
562
Views
Subset of genes with at least 1 intron larger than 5000 kbp
14 months ago shania90.lk • 10
2
Votes
10
Replies
1.1k
Views
problem with using gtf file in cufflinks in Galaxy
3.5 years ago nazaninhoseinkhan • 360 • updated 14 months ago Biostar 20
16
Votes
14
Replies
10k
Views
10 follow
extract only geneID and gene symbol from GTF file
4.5 years ago catherine12243 • 120 • updated 14 months ago Minstein • 100
0
Votes
0
Replies
617
Views
Extract assembled transcripts from Cufflinks gtf without to use reference genome
2.2 years ago marija.durdevic • 0 • updated 15 months ago Biostar 20
1
Vote
3
Replies
413
Views
Create a GTF file from mapped reads
15 months ago JulianC • 10 • updated 15 months ago grant.hovhannisyan ♦ 1.5k
0
Votes
5
Replies
415
Views
the track part of UCSC table browser
17 months ago mikysyc2016 • 50 • updated 15 months ago Denise - Open Targets ♦ 5.0k
3
Votes
6
Replies
1.1k
Views
Convert gff3 to gtf with R or shell
15 months ago bioinfo8 • 120
1
Vote
3
Replies
456
Views
hg38 gtf file containing all RNAs and features
15 months ago CrisMar • 70
1
Vote
2
Replies
361
Views
some questions on GFF3
15 months ago prasundutta87 • 330
1
Vote
2
Replies
568
Views
gffread query for gff to gtf conversion
15 months ago prasundutta87 • 330
0
Votes
1
Reply
469
Views
gffread error when converting gff to gtf
15 months ago LucasK • 0 • updated 15 months ago Jeffin Rockey ♦ 1.1k
3
Votes
4
Replies
523
Views
How to represent trans-spliced genes in GTF?
2.4 years ago Dan • 500 • updated 16 months ago Biostar 20
4
Votes
4
Replies
5.7k
Views
STAR genome index with and/or with out *.gtf annotation
3.5 years ago kirannbishwa01 • 1000 • updated 16 months ago drskm7 • 0
4
Votes
5
Replies
397
Views
Why a gene name have more than one ensembl ID in gtf?
16 months ago walker • 20 • updated 16 months ago Emily_Ensembl 18k
6
Votes
4
Replies
576
Views
TopHat v2.1.1- Warning: TopHat did not find any junctions in GTF file
16 months ago Munmun • 0 • updated 16 months ago genomax 68k
1
Vote
4
Replies
387
Views
Combining two databases in gtf file, bedtools gives wierd result
16 months ago marina.v.yurieva • 480 • updated 16 months ago Biostar 20
0
Votes
14
Replies
518
Views
Genebank to GTF recommended tool?
16 months ago caggtaagtat • 620
248 results • Page 1 of 7
Recent Votes
Answer: test question 1
Answer: test question 1
Markdown
Comment: Markdown
New test post with the AJAX system
Answer: Markdown
Markdown
A: Which Are The Best Programming Languages For A Bioinformatician?
A: Which Are The Best Programming Languages For A Bioinformatician?
Answer: Which Are The Best Programming Languages For A Bioinformatician?
Recent Locations • All
Manila, 1 day ago
Australia, 1 day ago
University Park, 2 days ago
USA, 5 days ago
State College, USA, 8 days ago
Recent Awards • All
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Autobiographer to lilyjacob987 • 0
Autobiographer to kapoormalvika912 • 0
Recent Replies
Answer: test question 1 by Linda • 20
more than 10 characters
Comment: Which Are The Best Programming Languages For A Bioinformatician? by Digital • 0
https://www.digitalumbrellas.com/ Welcome to Digital Umbrella Pakistan, USA, UK. A Service company you can Depend on
Comment: " testing dfg " by RamRS 21k
Testing highlighting functionality. Using `<span style="background-color: #FFFF00">`: <span style="background-color: #FFFF00">Span trial</…
Comment: " testing dfg " by RamRS 21k
Testing <u>underline</u> functionality.
Answer: Which Are The Best Programming Languages For A Bioinformatician? by Anna • 0
I could recommend you this research - https://www.romexsoft.com/blog/aws-hipaa-compliance-best-practices-checklist/
Comment: " testing dfg " by RamRS 21k
Testing comment with parentheses in URL: (this URL: https://www.ncbi.nlm.nih.gov/search/all/?term=BRCA1%20AND%20(Human%20OR%20Mouse))
Comment: get gene biotype for hg38 refseq by Natay Aberra 0
test the bumping
Comment: get gene biotype for hg38 refseq by genomax 68k
http://test.biostars.org/accounts/profile/2/ http://test.biostars.org/p/34/
Comment: New test post with the AJAX system by Natay Aberra 0
Yeah we will probably end up doing that.
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/accounts/profile/18713/ http://test.biostars.org/p/p371267/#p371295 test the bumping
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/p/p371285/ http://test.biostars.org/accounts/profile/user-2/
Comment: New test post with the AJAX system by genomax 68k
Checking to see if this comment bumps the thread to top.
Comment: Markdown by genomax 68k
http://test.biostars.org/p/p371285/
Comment: Markdown by genomax 68k
@nba5048: Why is the original post showing up in separate sections? No way to use old style reference to users: http://test.biostars.org/a…
Comment: Markdown by Natay Aberra 0
Check your biostar messages, You did get a notification.
Powered by the version 1.5.2