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240 results • Page
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GFF
•
reset
7
Votes
7
Replies
6.1k
Views
6 follow
How To Merge Gff Files
gff
merge
7.9 years ago
upendrakumar.devisetty
• 350
• updated 21 months ago
O.rka
• 110
2
Votes
7
Replies
192
Views
remove UTR annotations from gff
gff
21 months ago
rob234king
• 580
• updated 21 months ago
Ace
• 30
1
Vote
2
Replies
189
Views
Distance of promoter from TSS
promoter
transcription
annotation
gff
21 months ago
ognjen011
• 170
• updated 21 months ago
mrals89
• 20
2
Votes
3
Replies
150
Views
Amino acid sequence from CDS information of gff file
Amino acid
CDS
gff
21 months ago
doubleA
• 0
1
Vote
1
Reply
203
Views
Annotation problem while using Rsubread
annotation
gtf
gff
22 months ago
gokberk
• 30
2
Votes
1
Reply
173
Views
how to get gff file bos tau8 from ucsc to import in usegalaxy
ucsc
usegalaxy
gff
htseq-count
22 months ago
Kian
• 40
1
Vote
3
Replies
206
Views
How to get hold of the gff files for RepeatMAsker annotated human genome
repaetmasker
gff
human
genome
22 months ago
kwicher
• 10
1
Vote
0
Replies
237
Views
GTF from consensus sequence
gtf
gff
fasta
2.0 years ago
lfiedlerc
• 10
2
Votes
7
Replies
284
Views
IGB won't open .gff file.
IGB
gff
sequencing
genome
gff3
2.0 years ago
sj93
• 10
3
Votes
8
Replies
355
Views
Number of discovered genes in genome does not correspond with published annotation
RNA-Seq
NCBI
genome
annotation
GFF
2.0 years ago
P16226
• 0
• updated 2.0 years ago
kashiff007
• 50
1
Vote
2
Replies
427
Views
Filtering GFF annotations file
gff
R
Maker
GFF
2.1 years ago
alslonik
• 90
1
Vote
6
Replies
435
Views
Getting GFF annotation from sequence coordinates.
GFF
NCBI
gene annotation
Python
2.1 years ago
jsporter
• 60
12
Votes
2
Replies
562
Views
Visualize multiple GFF files
GFF
overlap
statistics
visualization
2.6 years ago
Anand Rao
• 210
• updated 2.2 years ago
Joe
12k
5
Votes
4
Replies
492
Views
'CDS' but not 'exon' in GFF
RNA-Seq
GFF
exon
cds
2.2 years ago
NielQC
• 10
• updated 2.2 years ago
tdmurphy
• 160
5
Votes
6
Replies
1.7k
Views
Gff file error in HTSeq-count
htseq count
gff
3.7 years ago
y.gladbach
• 0
• updated 2.2 years ago
Biostar
20
0
Votes
1
Reply
257
Views
How to get non-redundant set from multiple GFF files
GFF
Homology-based gene prediction
gene
2.2 years ago
bio_d
• 0
1
Vote
3
Replies
435
Views
Merging 2 GFF files
gff
combine
merge
gff3
2.2 years ago
bwczech
• 70
0
Votes
2
Replies
1.8k
Views
How to convert genomic position to transcript position?
gff
5.0 years ago
biolab
♦ 1.1k
• updated 2.3 years ago
Biostar
20
3
Votes
6
Replies
1.5k
Views
Convert bed12 to GFF
bed
gff
bed12
2.3 years ago
cmdcolin
♦ 1.2k
0
Votes
5
Replies
293
Views
R bioconductor package `rtracklayer` possible memory leakage
gff
R
bioconductor
memory leakage
2.4 years ago
Chirag Parsania
♦ 1.4k
0
Votes
3
Replies
412
Views
GFF file multiple features for 1 gene region, how to collapse into 1?
RNA-Seq
GFF
BEDTOOLS
2.4 years ago
YOUSEUFS
• 10
• updated 2.4 years ago
Carambakaracho
♦ 1.2k
0
Votes
2
Replies
331
Views
Fetched gene from gff file shows similarity to other organism
gff
reference
2.4 years ago
shubhra.bhattacharya
• 120
1
Vote
8
Replies
463
Views
Making Zero based coordinate system in gff file
gff
gene
2.4 years ago
1234anjalianjali1234
• 30
5
Votes
14
Replies
593
Views
How can I easily remove overlapping transcripts, keeping only longest transcript, in a GFF file.
gff
parse
2.4 years ago
a.rex
• 190
• updated 2.4 years ago
Malcolm.Cook
♦ 1.0k
6
Votes
14
Replies
1.4k
Views
GFF to TBL file conversion for annotation submission
GFF
Annotation
NCBI
Genome
3.1 years ago
arsilan324
• 70
• updated 2.4 years ago
Shaun Jackman
• 420
0
Votes
2
Replies
3.8k
Views
GFF3 to GTF
gff
gtf
5.0 years ago
silas008
• 100
• updated 2.5 years ago
RamRS
21k
2
Votes
9
Replies
430
Views
Merging position of all different CDS of a single gene in one line
CDS
GFF
gene duplication
2.5 years ago
1234anjalianjali1234
• 30
• updated 2.5 years ago
rjactonspsfcf
• 90
5
Votes
4
Replies
2.9k
Views
Cufflinks gffread utility
cufflinks
gffread
gff
reverse complement
4.8 years ago
Thomas Bradley
• 90
• updated 2.5 years ago
madzayasodara
• 0
5
Votes
2
Replies
2.7k
Views
Merging Blastx Hits From Overlapping Bacterial Genome Segments
blast
gff
annotation
genome
bacteria
11.0 years ago
Darked89
4.2k
• updated 2.5 years ago
RamRS
21k
6
Votes
8
Replies
629
Views
Calculate CDS phase in gff3 format
gff
phase
CDS
genome feature format
2.5 years ago
marongiu.luigi
• 380
• updated 2.5 years ago
Carambakaracho
♦ 1.2k
7
Votes
3
Replies
521
Views
What is wrong with NCBI's gff file?
GFF
2.6 years ago
rimgubaev
• 120
1
Vote
2
Replies
388
Views
some questions on GFF3
GFF
GTF
annotation
2.6 years ago
prasundutta87
• 330
1
Vote
2
Replies
610
Views
gffread query for gff to gtf conversion
GFF
GTF
annotation
software
2.6 years ago
prasundutta87
• 330
0
Votes
1
Reply
487
Views
gffread error when converting gff to gtf
gff
gtf
gffread
software error
2.6 years ago
LucasK
• 0
• updated 2.6 years ago
Jeffin Rockey
♦ 1.1k
2
Votes
2
Replies
295
Views
collapsing GFF coordinates with common start OR stop
GFF
parse
script
bedtools
Perl
2.6 years ago
Anand Rao
• 210
• updated 2.6 years ago
h.mon
25k
5
Votes
4
Replies
1.1k
Views
How to extract all promoter regions in multi-fasta format from genome using GFF?
promoter
genome
gff
fasta
2.7 years ago
rimgubaev
• 120
1
Vote
1
Reply
348
Views
ssrs filtering from gff3 file
RNA-Seq
genome
ssrs
gff
2.7 years ago
moohit21
• 0
• updated 2.7 years ago
Vijay Lakhujani
4.1k
0
Votes
0
Replies
617
Views
Training GeneMark-ES: Data format error; gmhmme3 : warning, evidence_training.gff line ignored
GeneMark-ES
GFF
evidence
training
2.7 years ago
gabri
• 50
0
Votes
1
Reply
292
Views
prepare a GFF file for MOCK fasta reference
genome
gff
sequence
2.7 years ago
Sam
• 110
1
Vote
4
Replies
1.3k
Views
Variant Effect Predictor parameters for custom gff and fasta
VEP
SNP
fasta
gff
4.2 years ago
R.Blues
• 80
• updated 2.7 years ago
nicolas.dussex
• 30
15
Votes
8
Replies
8.0k
Views
Get intronic and intergenic sequences based on gff file
GFF
6.5 years ago
biolab
♦ 1.1k
• updated 2.7 years ago
zx8754
7.5k
1
Vote
3
Replies
3.0k
Views
Converting from BED to SAF/GFF
bed
gff
saf
featureCount
4.2 years ago
ccag
• 30
• updated 2.7 years ago
ATpoint
17k
2
Votes
8
Replies
614
Views
How do I filter out transcripts with less than two exons
bedtools
gff
bed
galaxy
2.8 years ago
alex.v.nesta
• 0
• updated 2.8 years ago
cpad0112
11k
0
Votes
6
Replies
380
Views
getting a combination of all predicted genes
bedtools
gff
2.8 years ago
bitpir
• 130
• updated 2.8 years ago
Alex Reynolds
28k
0
Votes
0
Replies
510
Views
GFF liftOver using CrossMap is failing.
software error
Gff
liftOver
CrossMap
2.8 years ago
kirannbishwa01
• 1000
57
Votes
11
Replies
49k
Views
10 follow
Convertion Of Gff3 To Gtf
gff
gtf
8.8 years ago
geek_y
9.7k
• updated 2.8 years ago
Giuseppe
• 0
1
Vote
1
Reply
372
Views
Using GFF3Writer in Biopython
biopython
gff
gff3
ensembl
2.8 years ago
Alice
• 280
• updated 2.8 years ago
finswimmer
11k
2
Votes
3
Replies
443
Views
Get summary of augustus ouput (gff)
augustus
gff
2.8 years ago
Darill
• 30
• updated 2.8 years ago
goodez
• 460
2
Votes
4
Replies
726
Views
IGV tracks gene annotation
IGV
gene
GFF
2.8 years ago
bitpir
• 130
• updated 2.8 years ago
h.mon
25k
6
Votes
2
Replies
12k
Views
Gff Or Bed File For Hg19 Genome
genome
seq
gff
hg19
7.5 years ago
rob.costa1234
• 160
• updated 2.8 years ago
h.mon
25k
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