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Showing : Encode • reset
4
Votes
4
Replies
2.5k
Views
ChromHMM 15 State Descriptions (Genic Enhancer)
ChromHMM ENCODE Roadmap Epigenomics
4.5 years ago
QVINTVS_FABIVS_MAXIMVS ♦ 2.2k • updated 21 months ago
Researcher • 30
0
Votes
2
Replies
170
Views
ChIP-seq Peak Calling/File Format
ChIP-Seq encode roadmap epigenome
22 months ago
lkalesin • 0 • updated 22 months ago
Friederike 4.2k
1
Vote
1
Reply
172
Views
Aligning FASTA sequences to ENCODE database?
SNP alignment ENCODE noncoding DNA
2.1 years ago
noadbsk • 0 • updated 23 months ago
Biostar 20
6
Votes
8
Replies
271
Views
Data downloads from ENCODE
encode
2.2 years ago
Uday Rangaswamy • 120 • updated 2.2 years ago
Kevin Blighe 43k
0
Votes
2
Replies
251
Views
Getting hints on protein function by correlating its ChIP-seq peaks with public datasets?
ChIP-Seq ENCODE data mining correlation
2.3 years ago
bsksln • 0
1
Vote
3
Replies
266
Views
unable to access encode
ChIP-Seq encode
2.5 years ago
Young • 0 • updated 2.4 years ago
WouterDeCoster 39k
0
Votes
4
Replies
321
Views
Visualization of a gene expression data
RNA-Seq Encode
2.4 years ago
evgenydeforzh • 0 • updated 2.4 years ago
Istvan Albert 87k
3
Votes
9
Replies
495
Views
gene_Id in ENCODE gene expression table
ENCODE Gene Conversion
2.4 years ago
fusion.slope • 200
3
Votes
1
Reply
1.2k
Views
BAM files for RRBS data in ENCODE Project
RRBS ENCODE BAM Download Alignment
5.0 years ago
Shicheng Guo ♦ 7.5k • updated 2.4 years ago
RamRS 21k
1
Vote
1
Reply
956
Views
Chromatin accessibility (Genome Build 37) and feasibility of referencing it to a Genome Build 38
Chromatin Accesability hg38 ENCODE gene
5.0 years ago
adonisgamaliel • 10 • updated 2.4 years ago
RamRS 21k
0
Votes
1
Reply
2.0k
Views
Downloading CHIP-seq bed files for ENCODE Histone modification data
ENCODE ChIP-Seq Histone Modifers
5.0 years ago
morovatunc • 400 • updated 2.5 years ago
RamRS 21k
2
Votes
3
Replies
495
Views
Choosing a ChIP-seq control for Encode pipeline?
ChIP-Seq encode
2.5 years ago
gewa • 0 • updated 2.5 years ago
Alex Reynolds 28k
0
Votes
0
Replies
344
Views
What tool should be used to determine IDR or Np/Nt and N1/N2 between ChIP-seq samples?
ChIP-Seq IDR ENCODE
2.6 years ago
salamandra • 200
2
Votes
1
Reply
372
Views
Best way to systematically select ENCODE data to download?
encode
2.6 years ago
Eric Lim ♦ 1.4k
0
Votes
0
Replies
328
Views
differentially methylated bed file from encode
encode methylation WGBS
2.6 years ago
christacaggiano • 30
0
Votes
2
Replies
282
Views
I wanted to check this file for check gene expression but the gene and transcript id are starting from 1000
encode gene expression RNA-seq rna-seq
2.8 years ago
ankuresearch • 0
4
Votes
1
Reply
931
Views
Tool: SPAR: Web server and scripts for small RNA, short total RNA, miRNA-seq and single-cell small RNA sequencing data processing, analysis, and comparison…
RNA-Seq pipeline web server ENCODE small RNAs Tool
2.8 years ago
pkuksa • 40
0
Votes
1
Reply
463
Views
Tissue-specific Histone Mark bam files?
ChIP-Seq Histone ENCODE Roadmap Epigenomics
3.0 years ago
epaminonda • 10
1
Vote
0
Replies
393
Views
gene_id in ENCODE dataset
encode rna-seq RNA-Seq
3.0 years ago
evocanres • 30
2
Votes
0
Replies
837
Views
ENCODE Chip-seq Data Format
encode Chip-seq
3.1 years ago
Shicheng Guo ♦ 7.5k
1
Vote
1
Reply
558
Views
normalized expression data from ENCODE cell lines
RNA-Seq ENCODE
3.1 years ago
justa.dk • 0 • updated 3.1 years ago
Alex Reynolds 28k
1
Vote
1
Reply
892
Views
Encode RNA-seq expression matrix
RNA-Seq ENCODE
4.0 years ago
floris.barthel • 40 • updated 3.1 years ago
Zhilong Jia ♦ 1.4k
0
Votes
1
Reply
531
Views
Download all files from encode matching filter specifications
Encode
3.2 years ago
jyu429 • 120 • updated 3.2 years ago
Brian Gudenas • 90
1
Vote
3
Replies
942
Views
tagAlign to BAM
ENCODE tagAlign bam
3.4 years ago
rbronste • 240 • updated 3.4 years ago
venu 6.2k
0
Votes
2
Replies
1.1k
Views
Gene expression values from ENCODE RNA-seq experiments
RNA-Seq mRNA ENCODE K562
3.4 years ago
fabrizio.frasca • 0
0
Votes
0
Replies
543
Views
ENCODE methylation pipeline for command line
encode methylation WGBS
3.4 years ago
christacaggiano • 30
0
Votes
0
Replies
453
Views
Promoters for liver sinusoidal endothelial cells
Databases promoter LSECs ENCODE NCBIGEO
3.4 years ago
LNA • 30
2
Votes
1
Reply
1.6k
Views
Difference between "peaks" and "hotspots" in Output.type of ENCODE DNase-seq data sets
DNase-seq ENCODE hotspots peaks
3.6 years ago
panyard • 10 • updated 3.6 years ago
Alex Reynolds 28k
0
Votes
1
Reply
670
Views
bulk download in ENCODE
encode ChIP-Seq download
3.7 years ago
Biojl ♦ 1.6k • updated 3.6 years ago
Ming Tang ♦ 2.5k
0
Votes
0
Replies
497
Views
Comparing expression of undifferentiated cells using ENCODE - which data sets?
ENCODE RNA-seq
3.7 years ago
YaGalbi ♦ 1.4k
0
Votes
0
Replies
633
Views
How should I compare multiple TF methylation percentages?
methylation encode TF
3.8 years ago
morovatunc • 400
0
Votes
1
Reply
629
Views
paired sample in ENCODE RNA-seq and ChIP-seq
encode
3.8 years ago
bxia • 140
0
Votes
0
Replies
1.2k
Views
Choosing the right RNA-seq experiment: polyA mRNA vs polyA depleted
RNA-Seq ENCODE sequencing K562
3.9 years ago
fabrizio.frasca • 0
2
Votes
3
Replies
816
Views
Getting a gene list fom eCLIP bigBED file
eCLIP bed bigbed galaxy encode
3.9 years ago
o.hickman • 10 • updated 3.9 years ago
Alex Reynolds 28k
7
Votes
7
Replies
2.7k
Views
Predictability Of Regulatory States In New Cell Lines Or Tissues From Existing Encode Segmentations?
encode prediction
9.0 years ago
2184687-1231-83- ♦ 4.9k • updated 3.9 years ago
Biostar 20
0
Votes
0
Replies
683
Views
UCSC ENCODE Broad histone modifications genome version
ChIP-Seq UCSC ENCODE BROAD HISTONE GENOME ASSEMBLY
3.9 years ago
Rishikesh Lotke • 0
0
Votes
8
Replies
2.0k
Views
Can I run ENCODE ChIP-Seq pipeline or get their code?
ChIP-Seq ENCODE
3.9 years ago
rd • 20 • updated 3.9 years ago
geek_y 9.7k
0
Votes
0
Replies
544
Views
Genomic Elements from ENCODE/SV Nature Paper
genome annotation ENCODE
4.0 years ago
bruce.moran • 610
0
Votes
0
Replies
757
Views
ENCODE DNAse 1 HyperSensitivity Data - Signal of unique reads vs Base Overlap Signal vs Raw Signal
ENCODE
4.0 years ago
morovatunc • 400
15
Votes
12
Replies
2.2k
Views
Removal of repeat and blacklist regions from ChIP-seq data
ChIP-Seq Blacklist ENCODE
4.0 years ago
James Ashmore ♦ 2.6k • updated 4.0 years ago
Devon Ryan 90k
1
Vote
3
Replies
657
Views
ENCODE Chip-Seq alignments information
encode alignment ChIP-Seq
4.0 years ago
chrys • 40
1
Vote
1
Reply
851
Views
Are the ENCODE raw fastq files and genotyping data available for each cell line?
ChIP-Seq ENCODE
4.1 years ago
Milos Pjanic • 30 • updated 4.1 years ago
Khader Shameer 18k
0
Votes
0
Replies
808
Views
MCS-R2 (encode HS-40) hg19 genomic coordinates
coordinates DNase ENCODE Assembly
4.1 years ago
eurioste • 20
2
Votes
2
Replies
875
Views
Is it possible to rerun an encode pipeline?
encode alignment
4.1 years ago
ivar.grytten • 20
6
Votes
11
Replies
931
Views
How to edit large bed files in order to keep peaks in particular chromosome ?
R ChIP-Seq genome peak encode
4.2 years ago
Jurat Shahidin • 40 • updated 4.2 years ago
Alex Reynolds 28k
0
Votes
0
Replies
1.2k
Views
Download ENCODE data
encode ensembl
4.3 years ago
roalva1 • 80
12
Votes
6
Replies
11k
Views
How To Obtain Encode Tfbs Using The Ucsc Genome Browser
encode transcription binding
9.9 years ago
Linda • 160 • updated 4.3 years ago
Biostar 20
0
Votes
0
Replies
796
Views
What does mm10-minimal mean in encode files
metadata encode mm10-minimal
4.3 years ago
Saad Khan • 330
0
Votes
1
Reply
797
Views
ENCODE UCSC data
ChIP-Seq ENCODE UCSC tracks
4.4 years ago
alessandrotestori7 • 330
1
Vote
2
Replies
603
Views
Sample description for high-level modEncode data?
encode modencode annotation
4.4 years ago
unksci • 150 • updated 4.4 years ago
dyollluap • 300
125 results • Page 1 of 3
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