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BQSR
•
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3
Votes
2
Replies
191
Views
GATK quality recalibration to get recalibrated BAM files before SNP calling
GATK
BQSR
recalibration
SNP
20 months ago
alicia.poppy
• 0
• updated 20 months ago
Nicolas Rosewick
7.7k
21
Votes
18
Replies
1.2k
Views
Tool:
elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
sam
bam
markduplicates
sort
bqsr
Tool
20 months ago
Charlotte.Herzeel
• 140
2
Votes
4
Replies
522
Views
error using bqsr and incompatible contigs
gatk
bqsr
2.5 years ago
bioguy24
• 190
• updated 2.0 years ago
Biostar
20
0
Votes
0
Replies
266
Views
Adam Transform BQSR result is different with Gatk
GATK
BQSR
ADAM
2.4 years ago
zhangnew
• 0
3
Votes
4
Replies
424
Views
multithread support for gatk
gatk
bqsr
2.5 years ago
bioguy24
• 190
1
Vote
0
Replies
741
Views
GATK4 BaseRecalibrator and Target region (whole exome data)
GATK4
BQSR
2.6 years ago
oghzzang
• 40
23
Votes
15
Replies
2.3k
Views
BQSR: when it is applicable?
GATK
BQSR
base quality
3.3 years ago
lamteva.vera
• 160
• updated 3.3 years ago
finswimmer
11k
2
Votes
3
Replies
998
Views
Is it necessery to perform GATK-BQSR before performing variant calling using freebayes.
Freebayes
BQSR
GATK
3.9 years ago
sktbanerjee1
• 30
• updated 3.9 years ago
finswimmer
11k
0
Votes
1
Reply
1.3k
Views
BamUtil for Base Qual Recalibration
bqsr
basequal
recalibration
recal
gatk
6.1 years ago
Danielk
• 570
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