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127 results • Page
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Showing :
ANNOVAR
•
reset
3
Votes
9
Replies
234
Views
Question about annotation for duplication using annovar
annovar
variant
next-gen
19 months ago
hns
• 140
• updated 19 months ago
hns0410
• 10
0
Votes
1
Reply
91
Views
Annovar and wannovar
wAnnovar
annovar
results
19 months ago
vaish01kv
• 0
2
Votes
3
Replies
169
Views
Annovar databases - where to get when annovar site is down?
annovar
21 months ago
martinov.michael
• 10
0
Votes
0
Replies
179
Views
how can I use sift score to filter variant correctly ?
SIFT
annovar
21 months ago
jiangpeng59
• 10
1
Vote
3
Replies
259
Views
Problem with .vcf annovar
vcf
annovar
maf
21 months ago
F
♦ 3.4k
• updated 21 months ago
onemoreuser
• 10
0
Votes
1
Reply
1.3k
Views
Annovar - Mouse Exome Sequencing
annovar
wes
whole-exome sequencing
mouse
3.6 years ago
cbatist
• 0
• updated 21 months ago
Kevin Blighe
43k
0
Votes
0
Replies
164
Views
converting annovar-formated vcf files to bcf files
annovar
bcf
vcf
23 months ago
hrora
• 0
1
Vote
4
Replies
240
Views
Annovar annotation for plants
annovar
plants
23 months ago
felipead66
• 30
• updated 23 months ago
Vitis
♦ 2.1k
0
Votes
7
Replies
269
Views
File format for HGMD pro file flat
HGMD
annovar
variant analysis
file format
24 months ago
Nandini
• 810
0
Votes
0
Replies
277
Views
Annotating Mycobacterium tuberculosis VCF file using snpEFF and aNNOVAR
SNP
annotation
snpEff
Annovar
MTB
2.0 years ago
S AR
• 50
2
Votes
3
Replies
388
Views
updated clinical variant annotation software and databases
clinvar
clinical annotation
annovar
ngs
exome
2.0 years ago
cocchi.e89
• 20
• updated 2.0 years ago
manuel.belmadani
• 830
2
Votes
1
Reply
281
Views
Annovar and VEP overlapp
annovar
vep
2.1 years ago
BAGeno
• 130
• updated 2.1 years ago
Kevin Blighe
43k
0
Votes
0
Replies
310
Views
SNV annotation with ANNOVAR to attach eQTL
SNV
eQTL
ANNOVAR
2.2 years ago
Shicheng Guo
♦ 7.5k
0
Votes
1
Reply
279
Views
ANNOVAR download and processing frequently Questions
annovar
download
esp6500siv2
2.2 years ago
Shicheng Guo
♦ 7.5k
1
Vote
3
Replies
373
Views
ANNOVAR annotate frameshift
ANNOVAR
mutation
variant
exonic
2.3 years ago
sugus
• 30
0
Votes
1
Reply
251
Views
downloading zebrafish snps for annovar
annovar
zebrafish
2.3 years ago
mark.dunning
• 200
5
Votes
6
Replies
8.6k
Views
Where Can I Get Annovar 'Refgene' Format?
annovar
ucsc
8.9 years ago
jessada
• 100
• updated 2.3 years ago
lffu_0032
• 30
1
Vote
7
Replies
442
Views
VCF Output file column explanation
SNP
genome
gene
annoVar
2.3 years ago
kathrine.tan
• 10
• updated 2.3 years ago
Kevin Blighe
43k
7
Votes
6
Replies
1.6k
Views
Annovar result explanation
annotation
SNP
next-gen
ANNOVAR
3.5 years ago
anu014
• 160
• updated 2.4 years ago
tannerkoomar
• 40
2
Votes
2
Replies
635
Views
Understanding Annovar Output
annovar
vcf
2.5 years ago
newbinf
• 0
• updated 2.5 years ago
h.mon
25k
0
Votes
1
Reply
437
Views
annovar-build a ensembl db
annovar
database
2.6 years ago
walker
• 20
• updated 2.6 years ago
Kevin Blighe
43k
1
Vote
14
Replies
481
Views
Differences in exon number from Biopython Entrez Package and ANNOVAR
annovar
entrez package
biopython
2.6 years ago
gero.knittel
• 10
• updated 2.6 years ago
Kevin Blighe
43k
6
Votes
7
Replies
420
Views
ANNOVAR precedence of annotation/specific transcript
ANNOVAR
refseq accession
transcript
precedence
2.6 years ago
gero.knittel
• 10
• updated 2.6 years ago
Kevin Blighe
43k
0
Votes
1
Reply
472
Views
Annovar Region Annotation
Annovar
3.0 years ago
hdtms
• 20
• updated 2.6 years ago
Biostar
20
0
Votes
1
Reply
537
Views
Invalid alternative alleles in ANNOVAR
ANNOVAR
error
annotation
allel
2.6 years ago
bisansamara
• 10
• updated 2.6 years ago
Kevin Blighe
43k
0
Votes
2
Replies
384
Views
Understanding the Notation of Genomic Variation Data
annovar
variants
annotation
nucleotides
mutations
2.7 years ago
bisansamara
• 10
7
Votes
15
Replies
599
Views
Bcftools view. FREQ inclusion error.
bcftools
annovar
FREQ
variant calling
2.7 years ago
tcom111
• 10
0
Votes
0
Replies
482
Views
whole genome annotation using annovar, what is -xref example/gene_xref.txt?
whole genome
Annovar
2.7 years ago
Sharon
• 440
7
Votes
5
Replies
454
Views
Difference between 'intergenic' and 'ncRNA' in annotation.
annotation
annovar
intergenic
ncrna
2.7 years ago
2012secondseason
• 10
• updated 2.7 years ago
WouterDeCoster
39k
4
Votes
3
Replies
593
Views
Annovar for mouse buildver and downdb?
vcf
annovar
2.8 years ago
Sharon
• 440
0
Votes
5
Replies
505
Views
Builiding reference for annovar based on build37.1?
Annovar
build37.1
2.8 years ago
Sharon
• 440
• updated 2.8 years ago
igor
7.7k
1
Vote
8
Replies
568
Views
build37 against hg19
annotation
annovar
vcf
2.8 years ago
Daisy
• 60
• updated 2.8 years ago
igor
7.7k
2
Votes
1
Reply
352
Views
Annovar coding_change error
Annovar
coding_change
2.8 years ago
er.doug.ragnar
• 20
• updated 2.8 years ago
Kevin Blighe
43k
2
Votes
4
Replies
599
Views
Annovar VCF annotation syntax error
VCF
Annovar
2.8 years ago
er.doug.ragnar
• 20
• updated 2.8 years ago
Kevin Blighe
43k
1
Vote
2
Replies
706
Views
Annovar annotation with refGene Database How to Dismiss Exon number and Gene Symbol from AAchange Column?
annovar
refGene
database
Variant calling
AAchange
2.9 years ago
mhmtgenc85
• 30
• updated 2.9 years ago
Biostar
20
0
Votes
3
Replies
842
Views
Problem with annovar in GATK4 output
exome
gatk4
annovar
2.9 years ago
ahmad mousavi
• 430
4
Votes
3
Replies
639
Views
Only the longest transcript while annotating with Annovar?
Annovar
annotation
SNP
transcript
refGene
2.9 years ago
mhmtgenc85
• 30
• updated 2.9 years ago
Kevin Blighe
43k
14
Votes
6
Replies
4.3k
Views
List all available databases for ANNOVAR
annovar
4.6 years ago
QVINTVS_FABIVS_MAXIMVS
♦ 2.2k
• updated 3.1 years ago
geocarvalho
• 110
0
Votes
2
Replies
669
Views
How to handle SV annotation of big DEL or DUP?
annovar
structural variation
annotation
3.1 years ago
rosa_ricla
• 0
• updated 3.1 years ago
Medhat
8.3k
1
Vote
1
Reply
800
Views
Annovar warning message
Annovar
Warning
3.1 years ago
hdtms
• 20
• updated 3.1 years ago
h.mon
25k
2
Votes
4
Replies
687
Views
should we ignore interesting variants with no MAF in gnomAD or ExAC by annovar?
variants
annovar
3.1 years ago
Tania
• 120
• updated 3.1 years ago
WouterDeCoster
39k
1
Vote
2
Replies
477
Views
Population frequency for variants missing annotation
annovar
rare mutation
3.2 years ago
gsudre
• 0
• updated 3.2 years ago
Pierre Lindenbaum
120k
0
Votes
3
Replies
1.1k
Views
Subsetting VCF annotated by ANNOVAR
annovar
vcf
bcftools
3.3 years ago
emyli
• 0
5
Votes
6
Replies
1.8k
Views
Exac and gnomad MAF value in VCF
vcf
Annovar
VEP
3.3 years ago
Sharon
• 440
• updated 3.3 years ago
Pierre Lindenbaum
120k
3
Votes
2
Replies
1.5k
Views
How to use GRCh38 as reference for Annotating the variants using Annovar?
Annovar
VCF
next-gen
3.3 years ago
Karma
• 200
• updated 3.3 years ago
Kevin Blighe
43k
0
Votes
2
Replies
827
Views
merging humsavar dataset with UniprotKB human variation
SNP
uniprot
ensembl
swissprot
annovar
3.4 years ago
arronslacey
• 240
• updated 3.4 years ago
emmahe
• 40
2
Votes
1
Reply
1.3k
Views
ANNOVAR - column description
ANNOVAR
3.5 years ago
Maxime Lamontagne
♦ 2.1k
1
Vote
9
Replies
1.6k
Views
VEP and Annovar Annotation
annovar
vep
3.5 years ago
BAGeno
• 130
0
Votes
5
Replies
730
Views
Inverted base and amino acid change in Annovar
annovar
3.5 years ago
user31888
• 60
0
Votes
9
Replies
1.4k
Views
COSMIC non-coding mutants annotation thru ANNOVAR
COSMIC
ANNOVAR
non coding
3.7 years ago
Santosh Anand
4.8k
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