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116,495 results • Page
3 of 2330
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Job:
Ensembl Outreach Project Leader
ebi
embl
genomics
ensembl
3 days ago by
Ben_Ensembl
★ 2.4k
2
votes
3
replies
246
views
Bwa sampe - BGI
Bwa-sampe
BGI
updated 3 days ago by
GenoMax
141k • written 3 days ago by
lorena9132
• 0
0
votes
0
replies
157
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 3 days ago by
Ram
43k • written 3 days ago by
David Langenberger
11k
0
votes
0
replies
127
views
GWAS Phenotypes
GWAS
3 days ago by
solomoncharles77
▴ 90
4
votes
2
replies
238
views
Forum:
Bioinformatics: Where do I start
Sequencing
updated 3 days ago by
Ram
43k • written 3 days ago by
Adi
▴ 10
0
votes
2
replies
287
views
GSEA analysis in R
GSEA
R
Arabidopsis
1 day ago by
Sudip
• 0
1
vote
2
replies
237
views
Visualization of PROKKA Annotation Result?
PROKKA
Annotation
updated 3 days ago by
Joe
21k • written 4 days ago by
ferdinand
▴ 10
0
votes
2
replies
348
views
Which experiments generate Position Frequency Matrix?
Position-Frequency-Matrix
2 days ago by
arriyaz.nstu
▴ 30
2
votes
2
replies
364
views
I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calculated solely from the raw file (count matrix) provided in the Suppleme…
GEO
velocity
count-matrix
updated 3 days ago by
Ram
43k • written 3 days ago by
Spring
• 0
0
votes
0
replies
110
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
3 days ago by
QX
• 0
5
votes
4
replies
259
views
I'm new to cell ranger. Can single cells prepared with a protocol other than the 10x genomics protocol not be processed with cell ranger?
cellranger
scRNA-seq
10x
3 days ago by
Spring
• 0
2
votes
5
replies
360
views
Where to find the homopolymer regions bed file for Hg002 genome?
simple-repeats
hg002
bed
homopolymer-regions
2 days ago by
Bikram Kumar
• 0
1
vote
1
reply
276
views
WGCNA network from Adjacency or TOM matrix
WGCNA
network
updated 3 days ago by
andres.firrincieli
3.6k • written 7 days ago by
Milly
• 0
0
votes
1
reply
197
views
Error in edgeR/Deseq2 Analysis
r
edger
updated 3 days ago by
ATpoint
81k • written 3 days ago by
Ravita
• 0
0
votes
2
replies
206
views
Getting marker genes for cell types
clustering
marker-genes
umap
3 days ago by
orzrzlyo
▴ 20
0
votes
1
reply
200
views
gene body coverage with RSeqQC
rna-seq
qc
updated 3 days ago by
BioinfGuru
★ 1.7k • written 4 days ago by
wiscoyogi
▴ 40
0
votes
2
replies
229
views
Statistical Advice Needed for RNAseq Data Analysis
Statistical-Significance
Genomics
RNA-seq
Data-Analysis
updated 3 days ago by
Ram
43k • written 4 days ago by
David
• 0
0
votes
1
reply
176
views
Using adonis to include a random effect
mixed-model
adonis
updated 4 days ago by
LChart
3.9k • written 4 days ago by
leranwangcs
▴ 120
1
vote
3
replies
400
views
how to get the variance explained by the independent variable from multivariate distance matrix regression model with random effect?
multivariate-distance-matrix
regression
updated 4 days ago by
LChart
3.9k • written 5 days ago by
leranwangcs
▴ 120
1
vote
2
replies
240
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
3 days ago by
bioinfo
▴ 150
0
votes
1
reply
172
views
How to get the reference panel sites for TOPMed hg37 and 38
Imputation
updated 4 days ago by
bk11
★ 2.3k • written 4 days ago by
sinhas
• 0
1
vote
5
replies
333
views
Best way to deal with overlapping read names in merged BAM files
picard
MarkDuplicates
4 days ago by
shpak.max
▴ 50
0
votes
1
reply
190
views
merging Seurat objects after SCT
Seurat
SCT
updated 4 days ago by
Ram
43k • written 4 days ago by
michelle.swarovski
• 0
0
votes
1
reply
171
views
Two databases: Human Microbiome Project and MGnify
Microbiome
databases
updated 4 days ago by
GenoMax
141k • written 4 days ago by
haiying.kong
▴ 360
0
votes
2
replies
241
views
RNAseq 1 control 2 different treatment
RNA-seq
3 days ago by
matteo.levorato
• 0
1
vote
0
replies
130
views
Seeking Advice on Gene Ontology Analysis for Bulk RNA-Seq Data Without Control Samples
Gene-ontology
RNA-seq
R
updated 4 days ago by
Ram
43k • written 4 days ago by
Oscar
▴ 10
1
vote
2
replies
202
views
CombineGVCFs vs. MergeVcfs
CombineGVCFs
MergeVcfs
GATK
WGS
GVCF
updated 3 days ago by
Jeremy Leipzig
22k • written 4 days ago by
Sd
• 0
0
votes
0
replies
127
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 4 days ago by
Ram
43k • written 4 days ago by
polarise
▴ 380
0
votes
0
replies
136
views
How should I make kallisto indexes?
kallisto
updated 4 days ago by
GenoMax
141k • written 4 days ago by
bioinfo
▴ 150
2
votes
2
replies
195
views
Problem with Sniffles pipeline and SV calling help
SV
sniffles
StructuralVariant
updated 4 days ago by
GenoMax
141k • written 4 days ago by
njornet
▴ 20
4
votes
0
replies
164
views
Herald:
The Biostar Herald for Monday, April 15, 2024
herald
4 days ago by
Biostar
2.6k
2
votes
1
reply
214
views
Trouble understanding seemingly contradicting results of GSE analysis (contradicting enriched GO terms with similar negative NES scores)
GSEA
pathways
GO-terms
updated 4 days ago by
i.sudbery
19k • written 4 days ago by
Manko47
• 0
4
votes
6
replies
398
views
Odd results with BLAST remote
blast
remote
NCBI
updated 3 days ago by
b.contreras.moreira
▴ 160 • written 4 days ago by
Begonia_pavonina
▴ 150
6
votes
8
replies
476
views
BRAKER3 genome annotation
annotation
BRAKER3
genome
updated 2 days ago by
dariober
14k • written 4 days ago by
manaswiniparija3
▴ 40
2
votes
0
replies
190
views
What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
4 days ago by
Alexander
▴ 220
1
vote
1
reply
161
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 4 days ago by
GenoMax
141k • written 4 days ago by
eesiribloom
▴ 80
0
votes
0
replies
126
views
Automated internal stop codon checker
ORF
stopcodon
internal
virus
4 days ago by
Balazs Horvath
▴ 10
0
votes
0
replies
128
views
Repeat expansion identification tools for long-read data
fragilex
repeatexpansion
long-read
fmr1
4 days ago by
adarsh_pp
▴ 40
2
votes
4
replies
334
views
Which command ro run MAKER pipeline for gene annotation ?
run.
command
to
MAKERpipeline.
updated 4 days ago by
GenoMax
141k • written 5 days ago by
Sony
▴ 10
0
votes
0
replies
136
views
FreeBayes detection capacity
reads
freebayes
long
4 days ago by
quentinperriere
• 0
0
votes
2
replies
214
views
VCF annotation with gnomADv4 using R package
annotation
gnomADv4
R
VCF
2 days ago by
DKA
▴ 40
0
votes
2
replies
236
views
How to identify gaps in a genome?
awk
seqkit
assembly
fasta
genome
4 days ago by
rj.rezwan
• 0
7
votes
7
replies
850
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 4 days ago by
Dunois
★ 2.5k • written 5 days ago by
AdviceSeeker
• 0
0
votes
0
replies
154
views
Plotting heatmap of genes in each samples scRNA in Seurat
scRNA
heatmap
5 days ago by
Hien
• 0
0
votes
2
replies
264
views
Merging Outputs from plink --assoc and --hardy to Produce Table
PLINK
PANDAS
R
3 days ago by
Koketso
• 0
1
vote
3
replies
395
views
Extracting data from a local NCBI taxonomy database
R
NCBI
xml
E-utilities
Blast
updated 5 days ago by
josev.die
▴ 60 • written 18 days ago by
Begonia_pavonina
▴ 150
0
votes
0
replies
180
views
Novel cyclic peptide structure prediction
protein
structure-prediction
alphafold
peptide
updated 5 days ago by
Ram
43k • written 5 days ago by
menyawino
• 0
0
votes
0
replies
157
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
5 days ago by
carlopecoraro2
★ 2.5k
1
vote
3
replies
316
views
Ensembl gene id conversion
biomart
ensembl
updated 3 days ago by
ATpoint
81k • written 5 days ago by
naveedhasan2000
• 0
1
vote
2
replies
293
views
Extracting information from gff3 file produced by augustus
augustus
gff3
updated 4 days ago by
Istvan Albert
100k • written 5 days ago by
Jiang
• 0
116,495 results • Page
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bcftools multiple commands
bcftools pipe generated file from first command with second
C: How to setup a Summarized Experiment
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
what's the genomic location and name of gene responsible for orange and black patches in calico cats
Comment: featureCounts --primary tag counting uniquely mapped reads and excludes multi-ma
Answer: Duplicate marking, read names, and the SRA
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Answer: MEGA Analysis Issue on High-Performance Computer
by
Mensur Dlakic
★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
by
GenoMax
141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples
by
rheab1230
▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
Matthias Zepper
4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples
by
Ram
43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA
by
GenoMax
141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
GenoMax
141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
Jean-Karim Heriche
27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
Comment: Duplicate marking, read names, and the SRA
by
Luka
• 0
>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
GenoMax
141k
According to ChatGPT: The gene responsible for the orange and black patches of fur in calico cats (and tortoiseshell cats) is the X-linked …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
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