Showing top 100 posts ordered by votes and limited to allShow All
Showing : samtoolsreset
How To Filter Mapped Reads With Samtools
199 Votes | 24 Replies
7.2 years ago
sohadb1357
• 500
• updated 7 months ago
ibseq12
• 0
Tutorial: Piping With Samtools, Bwa And Bedtools
110 Votes | 25 Replies
7.8 years ago
Ying W
♦ 3.9k
• updated 4.2 years ago
Yaseen Ladak
• 20
Extract Only Uniquely Mappable Reads From Bam Files
51 Votes | 22 Replies
7.1 years ago
dfernan
• 650
• updated 6.4 years ago
yifangt
• 0
How Can I Convert Bam/Sam To Wiggle
46 Votes | 19 Replies
9.3 years ago
Stew
♦ 1.4k
• updated 4.8 years ago
catherine12243
• 120
What Does Samtools Flagstat Results Mean?
46 Votes | 13 Replies
8.3 years ago
Sakti
• 370
• updated 3.5 years ago
brent_wilson
• 100
Difference Between Samtools And Gatk Algorithms
44 Votes | 5 Replies
7.2 years ago
hellbio
• 370
• updated 7.2 years ago
lh3
31k
How To Find Out The Mismatchs Of An Alignment Entry In The Sam File?
38 Votes | 8 Replies
8.8 years ago
Rnaer
• 110
• updated 8.8 years ago
Jts
♦ 1.2k
Calculate Exon Coverage Using Samtools
37 Votes | 5 Replies
8.5 years ago
Cdiez
• 150
• updated 8.5 years ago
Aaronquinlan
11k
How Can I Edit Some Rows In .Bam Header File?
37 Votes | 4 Replies
8.6 years ago
Hmm
• 500
• updated 5.4 years ago
ykumar
• 30
Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
36 Votes | 16 Replies
7.9 years ago
Rm
7.8k
• updated 2.6 years ago
cmdcolin
♦ 1.2k
from .BAM to .BAI using samtools
35 Votes | 10 Replies
5.3 years ago
Kizuna
• 780
• updated 5.3 years ago
Pierre Lindenbaum
120k
Subsampling Bam File With Samtools
35 Votes | 5 Replies
6.5 years ago
madbessoul
• 190
• updated 16 months ago
ATpoint
17k
Depth Of Coverage Reported By Igv And Samtools Do Not Agree
35 Votes | 8 Replies
7.0 years ago
Anjan
• 810
• updated 5.0 years ago
-_-
• 830
Samtools + Picard Markduplicates
34 Votes | 7 Replies
9.2 years ago
Nery
• 110
• updated 9.2 years ago
lh3
31k
How To Sort Sam File
31 Votes | 11 Replies
5.9 years ago
Chen
• 880
• updated 22 months ago
Biostar
20
Getting Unmapped Reads: Comparing Fastq To Bam
31 Votes | 51 Replies
8.2 years ago
User 9996
• 800
• updated 8.2 years ago
brentp
23k
Multiple Bam To Multiple Sam
30 Votes | 14 Replies
6.8 years ago
venkateshr89
• 690
• updated 6.8 years ago
matted
7.0k
What Does The "Proper Pair" Bitwise Flag Mean In A Sam File?
30 Votes | 2 Replies
8.7 years ago
Panos
♦ 1.7k
• updated 8.4 years ago
Mitch Bekritsky
♦ 1.1k
Samtools And Region List
28 Votes | 20 Replies
7.5 years ago
win
• 810
• updated 4.0 years ago
Tom Koch
• 110
How To Efficiently Remove Snps That Are Present In All Samples?
28 Votes | 26 Replies
8.9 years ago
Ian
5.4k
• updated 4 months ago
RamRS
21k
Adding Read Groups To Bam Files
28 Votes | 6 Replies
7.6 years ago
Zev.Kronenberg
11k
• updated 7.6 years ago
Rm
7.8k
Run Samtools on multiple files
26 Votes | 21 Replies
2.6 years ago
V
• 110
• updated 2.6 years ago
WouterDeCoster
39k
Samtools Idxstats
26 Votes | 1 Reply
8.2 years ago
KCC
♦ 3.9k
• updated 8.2 years ago
Swbarnes2
♦ 1.5k
Change Coordinates -A 1.Bam -B 2.Bam -O 3.Bam?
25 Votes | 19 Replies
8.6 years ago
2184687-1231-83-
♦ 4.9k
• updated 8.5 years ago
Darked89
4.2k
samtools sorting and indexing
25 Votes | 7 Replies
2.6 years ago
ggman
• 80
• updated 2.6 years ago
John
12k
Samtools View: Only Forward Or Reverse Strand
24 Votes | 10 Replies
8.2 years ago
Gregor Rot
• 440
• updated 8.2 years ago
Chris Penkett
• 480
Merging Bam Files
24 Votes | 6 Replies
8.0 years ago
Tryingtogetthere
• 170
• updated 8 months ago
abhijit.synl
• 50
Snp Indel Discovery - Critique A Proposed Workflow
23 Votes | 12 Replies
8.7 years ago
Travis
♦ 2.8k
• updated 8.7 years ago
Doctoroots
• 780
Extracting Subsets Of Reads From A Bam File
21 Votes | 13 Replies
7.6 years ago
ijon.tichy
• 70
• updated 5.2 years ago
Fabio Marroni
♦ 2.2k
Extracting Paired-End Reads Sitting In Different Chromosomes
21 Votes | 9 Replies
7.9 years ago
Ian
5.4k
• updated 18 months ago
Stephane Plaisance
• 380
How To Get Mapping Statistics On Bam File
20 Votes | 9 Replies
6.8 years ago
komal.rathi
♦ 3.4k
• updated 6.8 years ago
Istvan Albert
80k
Samtools: "Too Many Open Files"
19 Votes | 4 Replies
8.6 years ago
Zhshqzyc
• 490
• updated 8.6 years ago
Istvan Albert
80k
Genotype Likelihood Calculation In Samtools Is Wrong?
18 Votes | 10 Replies
8.3 years ago
Marvin
• 850
• updated 8.3 years ago
lh3
31k
Bam File: Change Chromosome Notation
17 Votes | 21 Replies
8.3 years ago
Lisanne
• 100
• updated 5.0 years ago
petervangalen
• 30
Generating Both Pileup And Vcf/Bcf Using Samtools Mpileup
17 Votes | 5 Replies
7.0 years ago
claresloggett
• 70
• updated 6.7 years ago
Joseph Hughes
♦ 2.7k
Truncating Bam Files With Samtools
16 Votes | 2 Replies
8.1 years ago
User 9996
• 800
• updated 8.1 years ago
Gww
♦ 2.6k
News: Samtools/htslib/bcftools 1-3 released
16 Votes | 2 Replies
4.1 years ago
Devon Ryan
90k
• updated 3.4 years ago
xing
• 10
Samtools "Eof Marker Is Absent" Error Only In Version 0.1.19 ?
16 Votes | 6 Replies
6.2 years ago
Mike Axtell
• 240
• updated 5.9 years ago
scalabrin
• 0
Basic SAMtools tutorial
16 Votes | 12 Replies
3.9 years ago
statfa
• 450
• updated 3.9 years ago
genomax
68k
From Compressed Bam To Fastq
15 Votes | 8 Replies
8.7 years ago
Zhidkov
• 570
• updated 8.7 years ago
Eitan Rubin
• 30
Extract reads within given region, and their mates
15 Votes | 9 Replies
4.5 years ago
user230613
• 280
• updated 11 months ago
cmdcolin
♦ 1.2k
Forum: Let Us Congratulate Heng Li
15 Votes | 7 Replies
7.9 years ago
Rm
7.8k
• updated 7.8 years ago
Istvan Albert
80k
Bam File: Extract Chromosome Number And Start Position Reads
15 Votes | 8 Replies
8.2 years ago
Lisanne
• 10
• updated 8.2 years ago
Swbarnes2
♦ 1.5k
How To Combine Two Samtools Commands.
14 Votes | 11 Replies
8.3 years ago
dustar1986
• 290
• updated 4.2 years ago
Yaseen Ladak
• 20
How To Tell How Well A Sam File Was Mapped
14 Votes | 17 Replies
7.9 years ago
Applet
• 130
• updated 4.8 years ago
Biostar
20
Samtools: Local Realignment Around Indel
14 Votes | 2 Replies
8.6 years ago
Nanada
• 70
• updated 5.9 years ago
Biostar
20
samtools idxstats on indexed BAM failed
13 Votes | 8 Replies
5.7 years ago
Alex Reynolds
28k
• updated 5.6 years ago
Biostar
20
What Does This Cigar Mean?
13 Votes | 15 Replies
8.6 years ago
Gangcai
• 230
• updated 8.6 years ago
Marvin
• 850
Error of bam-to-sam conversion using samtools
13 Votes | 24 Replies
2.9 years ago
Gary
• 450
• updated 2.9 years ago
genomax
68k
Samtools sort error
13 Votes | 8 Replies
3.2 years ago
V
• 110
Problems installing samtools on linux (make command)
13 Votes | 11 Replies
5.4 years ago
axelwilhelm
• 100
• updated 2.9 years ago
ruterpereira
• 0
Install Samtools On Suse Linux
13 Votes | 5 Replies
7.1 years ago
win
• 810
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Comment: This is a test post by natay.aberra • 0
This is a test comment This is an edit
Answer: " testing dfg " by Natay Aberra 0
testing the autocomplete with mentioned users @Natay-Aberra @natay
Comment: " testing dfg " by RamRS 21k
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Answer: " testing dfg " by Natay Aberra 0
Hello, test drag and drop of comments
Comment: " testing dfg " by RamRS 21k
Testing twitter embedding: https://www.twitter.com/statnews/status/656174802911129600 https://twitter.com/statnews/status/660506539762057…
Answer: test question 1 by Linda • 20
more than 10 characters
Comment: Which Are The Best Programming Languages For A Bioinformatician? by Digital • 0
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Comment: " testing dfg " by RamRS 21k
Testing highlighting functionality. Using `<span style="background-color: #FFFF00">`: <span style="background-color: #FFFF00">Span trial</…
Comment: " testing dfg " by RamRS 21k
Testing <u>underline</u> functionality.
Comment: " testing dfg " by RamRS 21k
Testing comment with parentheses in URL: (this URL: https://www.ncbi.nlm.nih.gov/search/all/?term=BRCA1%20AND%20(Human%20OR%20Mouse))
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