362
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35 follow
164
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replies
60k
views
34 follow
105
votes
15
replies
112k
views
16 follow
updated 29 days ago by
xiaoleiusc
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140
•
written 11.9 years ago by
GouthamAtla
12k
103
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42
replies
31k
views
34 follow
updated 10 days ago by
Jeremy Leipzig
22k
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written 10.4 years ago by
14134125465346445
★
3.6k
98
votes
106
replies
46k
views
26 follow
updated 10 days ago by
psb7
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20
•
written 5.6 years ago by
Kevin Blighe
87k
85
votes
24
replies
23k
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17 follow
Tutorial:
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Gordon
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0
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written 3.5 years ago by
Hamid Ghaedi
3.2k
81
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27
replies
20k
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12 follow
57
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22
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28k
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7 follow
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Ram
43k
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written 4.5 years ago by
Arindam Ghosh
▴
510
54
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12
replies
28k
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updated 8 hours ago by
kjngo
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0
•
written 12.0 years ago by
Gabriel R.
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2.9k
49
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30
replies
11k
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13 follow
updated 21 days ago by
Istvan Albert
100k
•
written 8.1 years ago by
Ram
43k
39
votes
9
replies
42k
views
6 follow
updated 1 day ago by
Ram
43k
•
written 6.7 years ago by
lessismore
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1.3k
37
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5
replies
13k
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updated 8 days ago by
inedraylig
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60
•
written 2.8 years ago by
Pratik
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1.0k
31
votes
14
replies
12k
views
11 follow
30
votes
12
replies
3.8k
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26
votes
5
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23k
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23
votes
11
replies
4.8k
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7 follow
updated 2 days ago by
Ram
43k
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written 4.9 years ago by
WouterDeCoster
47k
23
votes
23
replies
9.8k
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updated 1 day ago by
Ram
43k
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written 5.3 years ago by
iraia.munoa
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130
22
votes
18
replies
6.1k
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22
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replies
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21
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6
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18
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4.4k
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Ram
43k
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written 7.5 years ago by
morteza.mahmoudisaber
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80
17
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8
replies
12k
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9 follow
updated 15 days ago by
AshleeThomson
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70
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written 6.1 years ago by
lauren.wahyudi
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50
17
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16
replies
14k
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10 follow
16
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10
replies
1.0k
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6 follow
updated 20 days ago by
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5.3k
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written 21 days ago by
Ann
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2.4k
15
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6
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1.2k
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6 follow
updated 3 days ago by
Pierre Lindenbaum
161k
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written 19 months ago by
wormball
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10
15
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6
replies
658
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15
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10
replies
7.6k
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6 follow
updated 22 days ago by
Alex Reynolds
35k
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written 8.3 years ago by
int11ap1
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470
13
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13
replies
18k
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9 follow
updated 10 days ago by
ummeswaiba
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0
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written 10.3 years ago by
biostar
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170
13
votes
22
replies
11k
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Ram
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written 6.8 years ago by
lessismore
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1.3k
13
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10
replies
6.4k
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12
votes
17
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6.0k
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9 follow
12
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421
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12
votes
4
replies
2.2k
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12
votes
14
replies
2.4k
views
8 follow
written 4.9 years ago by
Gabriel Wajnberg
▴
70
12
votes
13
replies
4.4k
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12
votes
7
replies
6.9k
views
11
votes
11
replies
1.1k
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7 follow
updated 9 days ago by
GenoMax
141k
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written 12 days ago by
alejandro.mejiam1
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10
11
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6
replies
499
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11
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12
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579
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11
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11
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9
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6.9k
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11
votes
7
replies
988
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updated 25 days ago by
Gordon Smyth
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7.0k
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written 11 weeks ago by
arvind.1
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10
11
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9
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11k
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10 follow
11
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22
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4.1k
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10
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6
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14k
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7 follow
updated 12 hours ago by
colindaven
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written 10.9 years ago by
Ontheway
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10
10
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36
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5.7k
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updated 1 day ago by
Ram
43k
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written 5.7 years ago by
Kristin Muench
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620
10
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7
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7.1k
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updated 2 days ago by
george-hall-ucl
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0
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written 9.2 years ago by
win
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970
10
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6
replies
4.1k
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updated 23 days ago by
Ram
43k
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written 6.2 years ago by
Kevin Blighe
87k
10
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37
replies
12k
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21 follow
updated 8 days ago by
aziz.hammou
•
0
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written 8.8 years ago by
kevluv93
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170
10
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5
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1.4k
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6 follow
updated 16 days ago by
Ram
43k
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written 2.5 years ago by
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30
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Popular Question to
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Recent Replies
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
by
cmdcolin
★
3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: Removing duplicates
by
joe
▴
500
I'd try those OP @samuel recommends
My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
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No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that.
EDIT: I've updated that number to 250. I'm hoping you won't need …
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
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This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
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GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like:
https://www.rcsb.org/search?requ…
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