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290 results • Page
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kegg
•
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21
Votes
24
Replies
1.4k
Views
Forum:
From DEGs of a non-model animals to statistically significantly enriched pathways
RNA-Seq
KEGG
GO
pathway enrichment
Forum
4.4 years ago
Farbod
♦ 3.3k
• updated 4.4 years ago
Carlo Yague
♦ 4.5k
60
Votes
21
Replies
11k
Views
15 follow
Which Is The Best Software To Represent Biological Pathways In A Directed Graph (Network) ?
kegg
pathway
network
10.4 years ago
Blenderous
• 180
• updated 6.3 years ago
ostrokach
• 280
36
Votes
17
Replies
22k
Views
11 follow
Get All The Genes In A Pathway (E.G. Kegg)
kegg
pathway
gwas
gene
9.6 years ago
Stephen
2.7k
• updated 2.4 years ago
RamRS
21k
20
Votes
16
Replies
7.2k
Views
Unexpected outcome: Gene Enrichment using Fisher's Test
R
KEGG
Enrichment
gene
Fisher's Test
6.4 years ago
Adrian Pelin
♦ 2.3k
• updated 6.4 years ago
aodaaodaslman2033
• 0
32
Votes
15
Replies
19k
Views
8 follow
Kegg Data Download
kegg
pathway
api
7.7 years ago
anika.menon22
• 190
• updated 4.5 years ago
Guangchuang Yu
♦ 2.2k
10
Votes
15
Replies
2.1k
Views
6 follow
Mapping Pathways To Genes
kegg
pathway
6.8 years ago
juncheng
• 180
• updated 6.8 years ago
Neilfws
48k
8
Votes
15
Replies
1.9k
Views
problem with KEGG pathway gene extraction
kegg
5.2 years ago
Abdullah
• 100
• updated 5.2 years ago
Kamil
♦ 1.9k
60
Votes
14
Replies
20k
Views
13 follow
Any Tools To Identify Significantly Altered Pathways?
pathway
kegg
microarray
10.1 years ago
Dejian
♦ 1.3k
• updated 4.1 years ago
bioinfo8
• 120
3
Votes
13
Replies
1.6k
Views
Inconsistency in Panther vs KOBAS2.0. Other recommendation for KEGG?
RNA-Seq
GENE ONTOLOGY
GO
KEGG
4.7 years ago
CandiceChuDVM
♦ 1.9k
4
Votes
13
Replies
3.2k
Views
Finding a list of genes contained in a given pathway
MAPK/ERK
PI3K/Akt
JAK/STAT
Pathway
KEGG
6.4 years ago
erikfas
• 20
• updated 6.4 years ago
Neilfws
48k
3
Votes
12
Replies
7.2k
Views
8 follow
How to perform KEGG enrichment analyses on a set of genes
rna-seq
kegg
enrichment
pathway
R
4.2 years ago
miyakokodama
• 20
• updated 2.6 years ago
bigmawen
• 310
12
Votes
12
Replies
4.6k
Views
How To Extract Go Terms From A Given Kegg Id
biomart
kegg
go
8.5 years ago
Rm
7.8k
• updated 23 months ago
Shaurya Jauhari
• 40
19
Votes
12
Replies
11k
Views
9 follow
Gene Pathway Association File For Kegg
kegg
pathway
9.9 years ago
Sequencegeek
• 740
• updated 7.3 years ago
Biostar
20
5
Votes
11
Replies
2.7k
Views
Retrieve Fasta Sequences From Kegg By Keyword
kegg
fasta
dna
protein
search
8.2 years ago
marcelolaia
• 0
• updated 8.2 years ago
Neilfws
48k
15
Votes
11
Replies
6.2k
Views
Hypergeometric Test R/Bioconductor Result Categorization
r
bioconductor
kegg
gene
enrichment
10.2 years ago
Thaman
♦ 3.2k
• updated 10.0 years ago
Brad Chapman
9.4k
41
Votes
11
Replies
2.5k
Views
8 follow
Kegg Paywalled, What Do People Use?
pathway
kegg
database
8.6 years ago
Iddo
• 230
• updated 23 months ago
Charles Warden
6.8k
20
Votes
10
Replies
5.0k
Views
7 follow
How Many Human Pathways Exist In Kegg Database?
kegg
pathway
database
9.6 years ago
Woa
♦ 2.7k
• updated 6.8 years ago
Haluk
• 170
9
Votes
10
Replies
3.2k
Views
Can We Download An Image Of Kegg ?
kegg
9.6 years ago
Radhouane Aniba
• 750
• updated 9.6 years ago
Chris Evelo
10.0k
3
Votes
10
Replies
3.8k
Views
6 follow
Pathway analysis for transcriptome profiles
RNA-Seq
trinity
kegg
pathway
6.1 years ago
Whoknows
• 740
• updated 6.0 years ago
andrew
• 460
14
Votes
10
Replies
2.6k
Views
How to get list of GeneIDs using SNP ID list?
SNP
gene
dbsnp
kegg
pathway
6.2 years ago
goksoy66
• 50
• updated 6.2 years ago
Maxime Lamontagne
♦ 2.1k
20
Votes
10
Replies
9.2k
Views
How To Use The Kegg Xml Files?
kegg
pathway
10.5 years ago
Panos
♦ 1.7k
• updated 2.4 years ago
RamRS
21k
7
Votes
9
Replies
3.8k
Views
EC number assignment tools
Kegg
metabolism
EC number
Bioinformatics
genome
6.6 years ago
sammy.ich17
• 20
• updated 6.5 years ago
Sean R Johnson
• 120
5
Votes
9
Replies
878
Views
Unable to map genes to KEGG pathway using pathview
clusterProfiler
R
Oryza sativa
KEGG
bioconductor
2.3 years ago
rice.researcher
• 130
• updated 2.2 years ago
bigmawen
• 310
12
Votes
9
Replies
8.4k
Views
How To Download Kegg Drug Database
kegg
8.6 years ago
AP
• 60
• updated 8.6 years ago
Damian Kao
15k
23
Votes
9
Replies
10k
Views
How To Batch Grab All Ko (Kegg Ontology) Terms Associated With Each Kegg Pathway?
kegg
pathway
7.4 years ago
JacobS
• 890
• updated 4.4 years ago
Dchoy
• 40
5
Votes
8
Replies
4.5k
Views
How To Map Kegg Data - Pathways As Nodes, Compounds As Edges.
kegg
network
8.2 years ago
Haji
• 50
• updated 7.7 years ago
balaji
• 40
6
Votes
8
Replies
2.2k
Views
Inconsistent numbers when using Kegg pathway analysis via DAVID?
DAVID
kegg
5.6 years ago
alnchalker
• 20
• updated 4.4 years ago
EagleEye
6.4k
6
Votes
8
Replies
1.2k
Views
how to get ko definition by using KEGG API?
KEGG
3.2 years ago
fanglujing
• 30
• updated 3.2 years ago
cpad0112
11k
9
Votes
8
Replies
2.2k
Views
How can I find the relation between pathways in KEGG?
KEGG
R
Pathway
6.1 years ago
sedaghat.nafiseh
• 20
• updated 6.1 years ago
Pavel Senin
♦ 1.9k
5
Votes
8
Replies
2.4k
Views
Looking For An Easy To Use Tool To Analyse A Gene Set For Enrichment Of Immunological Function
function
analysis
kegg
3.9 years ago
confusedious
• 420
10
Votes
8
Replies
2.1k
Views
6 follow
List of genes to list of pathways (no enrichment)
genes
pathways
python
reactome
kegg
6.5 years ago
R.Blues
• 80
• updated 6.5 years ago
Newgene
• 350
12
Votes
8
Replies
9.7k
Views
How To Do Pathway Mapping Using Kegg/Kaas?
kegg
pathway
10.6 years ago
Panos
♦ 1.7k
• updated 10.6 years ago
mgalactus
• 720
5
Votes
8
Replies
3.4k
Views
Current sources for pathway data/gene sets
Gene set
MsigDB
Kegg
Biocarta
Pathway
6.5 years ago
Lou
• 10
• updated 6.5 years ago
B. Arman Aksoy
♦ 1.2k
3
Votes
8
Replies
2.5k
Views
Gostats : Kegghypergparams Error
kegg
bioconductor
9.7 years ago
Radhouane Aniba
• 750
• updated 9.7 years ago
Laurent
♦ 1.6k
1
Vote
8
Replies
1.9k
Views
Mapping multiple expression data on KEGG genes and metabolites
KEGG
5.9 years ago
The
• 100
• updated 3.0 years ago
raghavsehgal1995
• 0
5
Votes
7
Replies
3.1k
Views
Identify Target Genes Of A Pathway
kegg
target
9.8 years ago
Rima
• 0
• updated 9.8 years ago
Larry_Parnell
16k
10
Votes
7
Replies
3.0k
Views
How To See Which Proteins / Enzymes Are Present In A Pathway (Using Resources In Kegg)?
pathway
kegg
10.6 years ago
Panos
♦ 1.7k
• updated 10.6 years ago
Khader Shameer
18k
0
Votes
7
Replies
741
Views
KEGG mapping from de novo transcriptome annotation
kegg
rnaseq
annotation
kobas
2.8 years ago
pablo61991
• 70
1
Vote
7
Replies
4.3k
Views
Parsing ./spoNA.xml file failed, please check the file!
kegg
s. pombe
6.6 years ago
Parham
♦ 1.4k
13
Votes
7
Replies
4.8k
Views
Merging Kegg Pathways
kegg
pathway
genes
8.6 years ago
Sudeep
♦ 1.6k
• updated 4.5 years ago
kandoigaurav
• 120
11
Votes
7
Replies
10k
Views
Available pipelines for functional annotaiton (COG, KEGG, GO) of genomes
genome
KEGG
COG
GO
genome annotation
6.2 years ago
dago
♦ 2.5k
• updated 6.2 years ago
hfang.shanghai
• 140
3
Votes
7
Replies
2.6k
Views
Kegg Pathways In Text?
kegg
r
pathway
text
8.9 years ago
Avoks
• 140
• updated 8.9 years ago
Casey Bergman
18k
7
Votes
7
Replies
2.2k
Views
Is There A Pathway Database With Directed Gene-Gene Edges
pathway
kegg
9.7 years ago
Lyco
♦ 2.3k
• updated 5.1 years ago
Biostar
20
18
Votes
7
Replies
1.5k
Views
How To Ensure Long-Term Support For Crucial Resources? Or Should We?
kegg
9.7 years ago
Mary
11k
• updated 9.7 years ago
Casey Bergman
18k
2
Votes
7
Replies
1.9k
Views
Retrieve 'Enzymes By Compound' Filtered By Organism
enzyme
network
api
kegg
9.1 years ago
Lo Sauer
• 160
• updated 9.1 years ago
Damian Kao
15k
9
Votes
7
Replies
2.3k
Views
Remove All Genes Associated With A Kegg Pathway From Analysis
gene
kegg
filter
10.5 years ago
Mike Dewar
♦ 1.5k
• updated 10.5 years ago
Will
4.5k
1
Vote
7
Replies
1.4k
Views
map proteins to EC numbers (KEGG) in non-model fungal organisms
KEGG
hmmer
5.1 years ago
bioPiraten
• 10
• updated 5.1 years ago
Manuel Landesfeind
♦ 1.2k
8
Votes
6
Replies
3.3k
Views
How To Get Flybase Gene Id According To Kegg Gene Id?
kegg
identifiers
9.9 years ago
Dejian
♦ 1.3k
• updated 9.9 years ago
Lars Juhl Jensen
11k
19
Votes
6
Replies
5.5k
Views
Is There Any Way To Retrieve Genes' Sequences In Fasta Format Using The Kegg Orthology Code?
sequence
retrieval
database
kegg
fasta
10.2 years ago
Luke
• 230
• updated 10.2 years ago
Skwsm
• 40
3
Votes
6
Replies
1.4k
Views
Can we draw phylogenetic tree using a set of Kegg Orthology Terms ?
KO
Phylogeny
KEGG
5.1 years ago
Amk
• 120
• updated 5.1 years ago
jhc
♦ 2.8k
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