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Showing : gatkreset
Vcf Sort According To Order Of The Reference File
15 Votes | 18 Replies
6.3 years ago
Tonyzeng
• 300
• updated 4.7 years ago
Biostar
20
GATK Haplotype Caller
14 Votes | 18 Replies
3.3 years ago
plink_9857
• 50
• updated 3.1 years ago
Biostar
20
Pre-Processing Of Solid Data For Gatk Snp Calling
12 Votes | 16 Replies
7.1 years ago
William
♦ 4.4k
• updated 7.1 years ago
brentp
23k
Bedtools intersect error
0 Votes | 16 Replies
How To Split Multiple Samples In Vcf File Generated By Gatk?
32 Votes | 16 Replies
6.5 years ago
newDNASeqer
• 630
• updated 2.9 years ago
Biostar
20
BQSR: when it is applicable?
23 Votes | 15 Replies
2.3 years ago
lamteva.vera
• 160
• updated 2.3 years ago
finswimmer
11k
GATK, SAM file doesn't have any read groups defined in the header
30 Votes | 15 Replies
5.4 years ago
Chirag Nepal
♦ 2.2k
• updated 4.6 years ago
ido.sloma
• 20
Gatk - Haplotypecaller Is So Slow, What Is Faster And As Good?
26 Votes | 13 Replies
6.6 years ago
newDNASeqer
• 630
• updated 3.4 years ago
daniel
• 30
Why Gatk Realignertargetcreator Outputs An Empty .Intervals???
3 Votes | 13 Replies
7.9 years ago
Chris
• 40
• updated 7.9 years ago
Johan
• 840
Is there a easy to use GATK pipeline for SNP calling?
8 Votes | 11 Replies
23 months ago
Chen
• 880
• updated 10 months ago
johannes.koester
• 10
Identifying De Novo Variants In Trio Data
13 Votes | 11 Replies
7.6 years ago
Vivek
♦ 2.3k
• updated 3.4 years ago
daniel
• 30
What Are The Open Source Alternatives To Gatk?
27 Votes | 11 Replies
7.0 years ago
scottsmith1
• 180
• updated 2.8 years ago
Brian Bushnell
16k
1000 Genomes Indel/Snps File
13 Votes | 10 Replies
9.1 years ago
Mpiro
• 30
• updated 9.1 years ago
Mpiro
• 0
Gatk Realignertargetcreator Sam/Bam Header Error
2 Votes | 10 Replies
7.0 years ago
Houkto
• 210
• updated 7.0 years ago
samsara
• 580
How to make variant calling run faster?
6 Votes | 9 Replies
2.4 years ago
steve
♦ 2.0k
• updated 2.4 years ago
Brian Bushnell
16k
Calling Genotypes On Multiple Trios
4 Votes | 9 Replies
7.9 years ago
a11msp
• 110
• updated 7.9 years ago
Bioinfosm
• 610
Karyotypically Ordered Hg19
18 Votes | 9 Replies
8.6 years ago
Edoardo Giacopuzzi
• 60
• updated 5.4 years ago
Biostar
20
Using Bash For Gatk Pipeline
4 Votes | 9 Replies
6.1 years ago
Paul
♦ 1.3k
Preprocessing The Bam For Gatk
11 Votes | 9 Replies
8.0 years ago
Pierre Lindenbaum
120k
• updated 8.0 years ago
lh3
31k
STAR add RG
7 Votes | 9 Replies
4.0 years ago
umn_bist
• 320
• updated 3.8 years ago
Biostar
20
Very Large Insertion Detection Methodology Query
6 Votes | 9 Replies
6.3 years ago
rob234king
• 580
• updated 6.3 years ago
Rohit
♦ 1.3k
Get Special Mutation Site'S Special Allele Reads
3 Votes | 8 Replies
7.2 years ago
litiancheng.gansu
• 10
• updated 4.3 years ago
Biostar
20
Expected Snp Allele Frequencies In Tumor Samples
7 Votes | 8 Replies
7.9 years ago
bw.
• 150
• updated 5.0 years ago
Biostar
20
How can I find Variants position by GATK and Samtools
5 Votes | 8 Replies
15 months ago
Mbillah
• 110
• updated 15 months ago
Biostar
20
Detection of CNVs
0 Votes | 8 Replies
3.4 years ago
nkausthu
• 20
• updated 3.4 years ago
chen
♦ 1.9k
Gatk Realignertargetcreator
6 Votes | 8 Replies
5.9 years ago
youngcsong
• 100
• updated 5.9 years ago
Pierre Lindenbaum
120k
Standard Practice of making VCF file from SAM file
1 Vote | 8 Replies
16 months ago
hafiz.talhamalik
• 70
• updated 15 months ago
Biostar
20
Removing Duplicates before aligning
8 Votes | 8 Replies
19 months ago
newbinf
• 0
• updated 19 months ago
gb
• 780
How To Control Wgsim Base Qualities?
8 Votes | 7 Replies
8.2 years ago
Pascal
♦ 1.5k
• updated 5.8 years ago
Zhaorong
♦ 1.2k
Gatk Unifiedgenotyper
2 Votes | 7 Replies
7.2 years ago
Biostar User
• 10
• updated 7.1 years ago
Raony Guimarães
• 990
How to conduct pathway analysis from VCF file?
5 Votes | 7 Replies
3.0 years ago
David_emir
• 340
• updated 3.0 years ago
Collin
• 660
Variant Calls: Freebayes vs GATK
11 Votes | 7 Replies
23 months ago
oars
• 150
• updated 23 months ago
vdauwera
• 920
Generating .Vcf.Idx Files From Cmdline
9 Votes | 7 Replies
8.3 years ago
Roman Valls Guimerà
• 510
• updated 8.3 years ago
Jitendra
• 50
RealignerTargetCreator (GATK) contig issue
0 Votes | 7 Replies
2.1 years ago
win
• 810
• updated 2.1 years ago
Pierre Lindenbaum
120k
How To Adjust The Chromosome Contigs Order
3 Votes | 7 Replies
6.3 years ago
Tonyzeng
• 300
• updated 5.4 years ago
dktarathym
• 40
Interpretation of REF and ALT columns of GATK generated VCF file
9 Votes | 7 Replies
4.9 years ago
Sandeep
• 250
• updated 4.8 years ago
Biostar
20
Recent Locations • All
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Recent Replies
Comment: Testing recipe link by Istvan Albert 80k
@genomax18713 change your handle to make it simpler
Comment: Testing recipe link by Istvan Albert 80k
let's see if the parenthesis at the end is fixed (https://www.biostars.org) or like this (see https://www.biostars.org)
Comment: Testing by ATpoint 17k
@ATpoint ping
Answer: How do play audio (playsound) in background of Python script? by genomax 68k
https://gist.github.com/afrendeiro/6732a46b949e864d6803
Comment: Testing by RamRS 21k
A `new_biostars` tag, @genomax18713? Seriously?
Answer: This is a test post by Jason 0
And this is a test [sample of hypothesis in dissertation][1]. [1]: https://essays-expert.com/dissertation-hypothesis-writing-services.h…
Comment: This is a test post by Natay Aberra 0
Test this post emails
Answer: This is another test post by Natay Aberra 0
@ialbert hello there testing.
Answer: This is another test post by Natay Aberra 0
@ialbert testing out emails again
Answer: This is another test post by Natay Aberra 0
@ialbert sending another message, testing the emailing out
Answer: This is another test post by Natay Aberra 0
@ialbert teest the mentioning
Comment: This is another test post by Natay Aberra 0
@natay autocomplete on comment edit @Biostar1
Answer: This is another test post by Natay Aberra 0
@Natay-Aberra , autocomplete on answers @Biostar1 autocomplete on edit
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