updated 6 hours ago by
kjngo
•
0
•
written 12.0 years ago by
Gabriel R.
★
2.9k
54
votes
12
replies
28k
views
12 follow
85
votes
24
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 22 hours ago by
Gordon
•
0
•
written 3.5 years ago by
Hamid Ghaedi
3.2k
10
votes
6
replies
14k
views
7 follow
updated 10 hours ago by
colindaven
6.3k
•
written 10.9 years ago by
Ontheway
▴
10
1
vote
4
replies
13k
views
updated 6 hours ago by
Ram
43k
•
written 7.4 years ago by
Tenghui Chen
•
0
9
votes
3
replies
6.9k
views
9
votes
10
replies
6.8k
views
22
votes
18
replies
6.1k
views
2
votes
4
replies
6.0k
views
2
votes
6
replies
5.1k
views
3
votes
8
replies
4.9k
views
3
votes
2
replies
4.1k
views
1
vote
3
replies
4.1k
views
3
votes
8
replies
4.1k
views
4
votes
2
replies
3.7k
views
7
votes
5
replies
3.6k
views
1
vote
3
replies
3.6k
views
3
votes
4
replies
3.4k
views
1
vote
3
replies
3.3k
views
updated 6 hours ago by
Ram
43k
•
written 9.9 years ago by
BrunoGiotti
▴
120
0
votes
3
replies
3.2k
views
1
vote
4
replies
3.1k
views
0
votes
3
replies
3.0k
views
updated 6 hours ago by
Ram
43k
•
written 8.9 years ago by
siddharth.patel.153
•
0
2
votes
3
replies
3.0k
views
updated 6 hours ago by
Ram
43k
•
written 6.9 years ago by
endikavarela
•
0
3
votes
3
replies
2.9k
views
updated 6 hours ago by
Ram
43k
•
written 7.9 years ago by
James Ashmore
★
3.4k
1
vote
2
replies
2.9k
views
updated 6 hours ago by
Ram
43k
•
written 6.8 years ago by
wamiqsaifi
•
0
0
votes
1
reply
2.9k
views
updated 6 hours ago by
Ram
43k
•
written 6.6 years ago by
sarahmanderni
▴
100
0
votes
2
replies
2.8k
views
updated 6 hours ago by
Ram
43k
•
written 7.0 years ago by
endikavarela
•
0
5
votes
2
replies
2.6k
views
updated 6 hours ago by
Ram
43k
•
written 9.1 years ago by
chengzhao41
▴
110
6
votes
0
replies
2.5k
views
updated 6 hours ago by
Ram
43k
•
written 7.0 years ago by
alexis.vandenbon
▴
80
2
votes
1
reply
2.3k
views
2
votes
1
reply
2.1k
views
1
vote
0
replies
2.1k
views
1
vote
3
replies
2.0k
views
updated 6 hours ago by
Ram
43k
•
written 6.9 years ago by
Shamim Sarhadi
▴
220
0
votes
0
replies
2.0k
views
updated 6 hours ago by
Ram
43k
•
written 6.9 years ago by
endikavarela
•
0
0
votes
0
replies
1.9k
views
updated 6 hours ago by
Ram
43k
•
written 7.1 years ago by
rahel14350
▴
40
0
votes
0
replies
1.9k
views
1
vote
2
replies
1.9k
views
updated 6 hours ago by
Ram
43k
•
written 6.5 years ago by
Alternative
▴
270
0
votes
7
replies
1.8k
views
2
votes
2
replies
1.8k
views
0
votes
1
reply
1.8k
views
updated 6 hours ago by
Ram
43k
•
written 6.6 years ago by
boymin2020
▴
80
0
votes
0
replies
1.7k
views
updated 6 hours ago by
Ram
43k
•
written 5.4 years ago by
baldissera152
▴
10
1
vote
4
replies
1.7k
views
2
votes
2
replies
1.6k
views
updated 6 hours ago by
Ram
43k
•
written 7.2 years ago by
tolgaturant
▴
20
6
votes
7
replies
1.6k
views
2
votes
3
replies
1.5k
views
updated 6 hours ago by
Ram
43k
•
written 3.5 years ago by
oakhamwolf
▴
20
1
vote
4
replies
1.4k
views
updated 6 hours ago by
Ram
43k
•
written 2.2 years ago by
claysandel
•
0
2
votes
4
replies
1.4k
views
0
votes
2
replies
1.2k
views
0
votes
4
replies
1.2k
views
0
votes
0
replies
1.2k
views
updated 6 hours ago by
Ram
43k
•
written 4.0 years ago by
getanid123
•
0
1
vote
9
replies
1.1k
views
Recent Locations •
All
Australia, just now
Palau, 10 minutes ago
Karachi, 15 minutes ago
Japan, 16 minutes ago
Canada, 18 minutes ago
United States, 21 minutes ago
United States, 23 minutes ago
Recent Awards •
All
Commentator to
GenoMax
141k
Centurion to
jkbonfield
★
1.2k
Popular Question to
yueli7
▴
250
Popular Question to
Randy H
▴
110
Popular Question to
ManuelDB
▴
80
Recent Replies
Comment: Removing duplicates
by
joe
▴
500
I'd try those OP @samuel recommends
My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that.
EDIT: I've updated that number to 250. I'm hoping you won't need …
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like:
https://www.rcsb.org/search?requ…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
PDB has a search API: https://search.rcsb.org/#search-example-1
Here's the JSON from your search query:
```
{
"query": {
"type": "grou…
Traffic: 1851 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6