Question

How To Calculate 95% Ci In Genotypes And In Alleles By Using Hardy–Weinberg Test?

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11.9 years ago

Mutant ▴ 10

My data is here

Genotype

AA AG GG

12 4 9

Thanks

test • 2.7k views

ADD COMMENT • link updated 10.6 years ago by Biostar 20 • written 11.9 years ago by Mutant ▴ 10

score 1 · Answer 1 · 2012-06-04

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11.9 years ago

Zev.Kronenberg 12k

Check out the HardyWeinberg package in [R]

CRAN - LINK

ADD COMMENT • link 11.9 years ago by Zev.Kronenberg 12k

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Thanks for your link, however it doesn't calculate 95% CI! Though I searched other programe in R and found genetics was doing it perfectly. So thanks for showing me the path!

ADD REPLY • link 11.9 years ago by Mutant ▴ 10

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The genetics package? Glad to help.

ADD REPLY • link 11.9 years ago by Zev.Kronenberg 12k

score 1 · Answer 2 · 2012-06-04

1

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11.9 years ago

Giovanni M Dall'Olio 28k

You can also use the plink package, with the option --hardy. It doesn't require R, and it gives a p-value which may be similar to the confidence interval that you are asking for.

ADD COMMENT • link 11.9 years ago by Giovanni M Dall'Olio 28k