Draw a genome map with CGView server?

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4.9 years ago

El Niño ▴ 10

Hi everyone,

I am a bioinformatics newbie. I was asked to draw a genome map of a strain of bacteria whose complete genome sequence has been worked out. However, when I put my .fasta file onto the website CGView server, it showed only the longest contig (~280KB) on the circular genome map, while in fact my whole genome is around 5.8MB long.

What happened? Does anybody know how to solve this problem? Thank you a bunch. The genome assembly part was done by another lab using SOAP denovo. The assembly results give 201 contigs.

assembly genome map CGView • 1.4k views

ADD COMMENT • link 4.9 years ago by El Niño ▴ 10

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use another tool like circos ?

ADD REPLY • link 4.9 years ago by Pierre Lindenbaum 161k

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Yeah, should be that. But I still need to know why my data cannot generate a full genome map? Do you have any idea?

ADD REPLY • link 4.9 years ago by El Niño ▴ 10

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