Off topic:How to perform fst test using SNPs frequency?
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5.0 years ago

How to perform fst test using SNPs frequency?

My data format:

SNPs         Pop1  Pop2     Pop3    Pop4    Pop4    Pop5    Pop6    Pop7
rs2740574   0.974   0.9448  0.7921  0.9625  0.9616  0.902   0.3556  0.9161
rs1751034   0.8906  0.7586  0.798   0.8457  0.8223  0.8081  0.7413  0.747
rs1414334   0.875   0.8453  0.7872  0.8831  0.857   0.8533  0.5555  0.9081
rs662799    0.849   0.8966  0.9005  0.9203  0.9311  0.8913  0.8791  0.8491
rs2359612   0.8021  0.5172  0.6431  0.6105  0.6305  0.628   0.7907  0.546
rs2228570   0.7969  0.5868  0.6478  0.6445  0.5927  0.5996  0.7847  0.5425
rs7196161   0.7917  0       0.5758  0.6141  0.6353  0.6194  0.5408  0.5418
fst frequency SNP • 551 views
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