Hi All,
This is my first post on this blog, so I apologise if I don't quite get all the etiquette. I am having a real problem with rsem and whilst the answer appears relatively self-exaplantory from the code, I can't figure out what i'm missing.
rsem-calculate-expression --paired-end \ --star \ --star-path /path/STAR-2.5.3a/bin/MacOSX_x86_64/STAR \ --star-gzipped-read-file \ -p 2 \ /path/VM1018_R1.fastq.gz \ /path/VM1018_R2.fastq.gz \ /genomes/GRCH38_star_ref
I continue to get the error message 'Invalid number of arguments', but I am unsure which non-default I am missing when looking at examples etc.
I am currently running this on RSEM-1.3.0.
I'm sure that the answer is obviously straightforward, but I just can't see it.
Thanks in advance!
Matt
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