Question

what are the sources to analyze and visualize annotated fasta reads ?

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7.3 years ago

faizansaleem1992 ▴ 40

Hello, I have assembled and annotated my raw illumina sequences, and now I want to visualise and analyze my annotated fasta reads. Kindly mention some sources i.e softwares, web servers etc. except mg-rast.

alignment blast gene genome sequence • 1.6k views

ADD COMMENT • link updated 7.3 years ago by Abdul Rafay Khan ★ 1.2k • written 7.3 years ago by faizansaleem1992 ▴ 40

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What type of reads you have ? DNA or RNA

ADD REPLY • link 7.3 years ago by Abdul Rafay Khan ★ 1.2k

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I have assembled DNA reads in fasta format.

ADD REPLY • link 7.3 years ago by faizansaleem1992 ▴ 40

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With what did you annotate the assembly? What is the aim of your visualization?

ADD REPLY • link 7.3 years ago by WouterDeCoster 47k

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I have metagenomic data and want to get the taxonomic and functional annotation.

ADD REPLY • link 7.3 years ago by faizansaleem1992 ▴ 40

score 0 · Answer 1 · 2017-01-02

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7.3 years ago

Abdul Rafay Khan ★ 1.2k

You need to map sequencing reads to a reference genome with Bowtie2.

ADD COMMENT • link 7.3 years ago by Abdul Rafay Khan ★ 1.2k