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538
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Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
14 days ago by swbarnes2 14k
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538
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
14 days ago by swbarnes2 14k
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377
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Comment: Comment: Seeking Help with Unexpected MA Plot Output
14 days ago by swbarnes2 14k
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392
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
17 days ago by swbarnes2 14k
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309
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Answer: Answer: Find out shared differentially expressed genes between two cell lines due to kno
26 days ago by swbarnes2 14k
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278
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Answer: Answer: Detecting viruses in human rna seq data
27 days ago by swbarnes2 14k
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379
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Answer: Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
28 days ago by swbarnes2 14k
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510
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Answer: Answer: Overriding a color palette in R to emphasize specific data points
4 weeks ago by swbarnes2 14k
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542
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Comment: Comment: RNA_seq
4 weeks ago by swbarnes2 14k
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542
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Answer: Answer: RNA_seq
4 weeks ago by swbarnes2 14k
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0
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348
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
5 weeks ago by swbarnes2 14k
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361
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Answer: Answer: Re. Batch effect correction in data with a design matrix without full rank
5 weeks ago by swbarnes2 14k
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506
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Answer: Answer: RNA Seq Sample Outlier
5 weeks ago by swbarnes2 14k
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364
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Answer: Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
5 weeks ago by swbarnes2 14k
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1
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404
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Answer: Answer: (STAR) What causes a high number of reads that are unmapped because they are too
5 weeks ago by swbarnes2 14k
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1
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287
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Answer: Answer: Single cell rna sequencing analysis using R help
5 weeks ago by swbarnes2 14k
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393
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Answer: Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
6 weeks ago by swbarnes2 14k
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0
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236
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Answer: Answer: biological replicate in STAR command
7 weeks ago by swbarnes2 14k
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346
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Answer: Answer: PCA plot analysis
7 weeks ago by swbarnes2 14k
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1
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414
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Answer: Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
8 weeks ago by swbarnes2 14k
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0
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298
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Comment: Comment: Getting less DE genes when incorporating all samples
8 weeks ago by swbarnes2 14k
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436
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Comment: Comment: Count table statistical analysis
8 weeks ago by swbarnes2 14k
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1
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519
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
9 weeks ago by swbarnes2 14k
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519
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Answer: Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
9 weeks ago by swbarnes2 14k
1
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0
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567
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Comment: Comment: Three fastq files
9 weeks ago by swbarnes2 14k
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0
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455
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Comment: Comment: Differential gene expression design using Deseq2
10 weeks ago by swbarnes2 14k
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1
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1.0k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
10 weeks ago by swbarnes2 14k
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1.0k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
10 weeks ago by swbarnes2 14k
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0
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529
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Answer: Answer: Help interpreting Samtools Flagstat results
11 weeks ago by swbarnes2 14k
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0
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440
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Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
12 weeks ago by swbarnes2 14k
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1
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440
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Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
12 weeks ago by swbarnes2 14k
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0
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627
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Comment: Comment: No tumour cells in clustering of tumor sample?!
3 months ago by swbarnes2 14k
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0
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663
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Comment: Comment: DESeq2 heatmap with low baseMean values
3 months ago by swbarnes2 14k
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1
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663
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Comment: Comment: DESeq2 heatmap with low baseMean values
3 months ago by swbarnes2 14k
1
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0
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306
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Answer: Answer: Interpretation of output from MiXCR TCR sequencing
3 months ago by swbarnes2 14k
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0
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341
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Answer: Answer: Strand information from reverse stranded RNA-seq
3 months ago by swbarnes2 14k
0
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0
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582
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Comment: Comment: bcl2fastq problems with the yield
4 months ago by swbarnes2 14k
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1
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582
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Answer: Answer: bcl2fastq problems with the yield
4 months ago by swbarnes2 14k
1
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1
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630
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Comment: Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
4 months ago by swbarnes2 14k
1
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0
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453
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Answer: Answer: Are 10x cellranger-arc ATAC bam files deduplicated?
4 months ago by swbarnes2 14k
1
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0
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384
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Answer: Answer: Bulk and Single Cell RNA-seq online course
4 months ago by swbarnes2 14k
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0
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788
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Answer: Answer: STAR ALIGNMENT
4 months ago by swbarnes2 14k
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0
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788
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Comment: Comment: STAR ALIGNMENT
4 months ago by swbarnes2 14k
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1
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899
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Answer: Answer: Handling multiple fastq files per sample, per lane, per read out of the Cellrang
5 months ago by swbarnes2 14k
0
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1
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802
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Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
5 months ago by swbarnes2 14k
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0
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727
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Answer: Answer: RNAseq how to map Mouse+Virus Genome with STAR
5 months ago by swbarnes2 14k
1
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0
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923
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Comment: Comment: deal with PCA and my samples
5 months ago by swbarnes2 14k
2
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0
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713
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Answer: Answer: batch correction in DESeq2
5 months ago by swbarnes2 14k
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1
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1.2k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
5 months ago by swbarnes2 14k
1
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1
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1.2k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
5 months ago by swbarnes2 14k
1,984 results • Page 1 of 40
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