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0
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5
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4.4k
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How to highlight DE genes in plotMD ?
edgeR plotMD volcanoplot mirnaseq
updated 3.0 years ago by • 0 • written 6.0 years ago by ▴ 110
0
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1
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1.4k
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I have few Differentially expressed miRNAs out of edgeR ?
miRNAs pathway analysis enrichment analysis GO
updated 3.4 years ago by 87k • written 6.0 years ago by ▴ 110
1
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1
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1.4k
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How to decode patient barcode inTCGA database ?
tcga patient GDC R
updated 3.9 years ago by 20 • written 5.7 years ago by ▴ 110
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2
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2.1k
views
Are there good reference for miRNA microRNA pathway analysis in R following edgeR run?
mirna microrna pathway analysis
updated 5.1 years ago by ▴ 60 • written 6.1 years ago by ▴ 110
0
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1
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1.3k
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Should I remove samples after normalization of miRNA seq read counts ?
rna-seq RNA-Seq edgeR miRNAs
updated 5.5 years ago by 20 • written 6.2 years ago by ▴ 110
0
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1
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1.7k
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Comment: C: How to create design matrix for confounder (here sunlight) in edgeR ?
5.5 years ago by Björn ▴ 110
0
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3
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1.7k
views
How to create design matrix for confounder (here sunlight) in edgeR ?
edger rnaseq
updated 5.6 years ago by 8.3k • written 5.6 years ago by ▴ 110
1
vote
2
replies
3.8k
views
TCGA patient variable data dictionary
tcga mirna
updated 5.6 years ago by 87k • written 5.6 years ago by ▴ 110
0
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1
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3.0k
views
Comment: C: Problem with low count removal in edgeR ?
5.6 years ago by Björn ▴ 110
0
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1
reply
3.0k
views
Comment: C: Problem with low count removal in edgeR ?
5.6 years ago by Björn ▴ 110
0
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1
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3.0k
views
Comment: C: Problem with low count removal in edgeR ?
5.6 years ago by Björn ▴ 110
0
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1
reply
3.0k
views
Comment: C: Problem with low count removal in edgeR ?
updated 5.6 years ago by 104k • written 5.6 years ago by ▴ 110
0
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9
replies
3.0k
views
Problem with low count removal in edgeR ?
edgeR mirna Differential expression
5.6 years ago by Björn ▴ 110
3
votes
7
replies
3.3k
views
How to create PCA plot and heatmaps using only significant genes in edgeR ?
edgeR heatmaps PCA R
updated 5.6 years ago by 11k • written 5.8 years ago by ▴ 110
3
votes
2
replies
3.8k
views
Why DE genes are not among highly variable genes between groups
edgeR variance mirna
updated 5.6 years ago by 20 • written 6.0 years ago by ▴ 110
0
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0
replies
1.3k
views
what to use in "Geneinfo" for miRNA in -TCGAanalyze_Normalization- of TCGAbiolinks
tcga mirna normalization geneinfo
5.7 years ago by Björn ▴ 110
0
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0
replies
839
views
Answer: A: Is miRNA microarray better than NGS for circulating miRNA quantification?
5.7 years ago by Björn ▴ 110
0
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0
replies
3.4k
views
Comment: C: How to make circos plot in R for miRNA and target genes retrieved from targetsca
5.7 years ago by Björn ▴ 110
0
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2
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3.3k
views
Comment: C: How to create PCA plot and heatmaps using only significant genes in edgeR ?
5.8 years ago by Björn ▴ 110
3
votes
8
replies
3.4k
views
How to make circos plot in R for miRNA and target genes retrieved from targetscan?
circos plot mirna genes targetscan R
updated 5.8 years ago by ★ 1.1k • written 5.8 years ago by ▴ 110
0
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1
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3.4k
views
Comment: C: How to make circos plot in Rstudio for miRNA and target genes retrieved from tar
5.8 years ago by Björn ▴ 110
0
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0
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3.4k
views
Comment: C: How to make circos plot in Rstudio for miRNA and target genes retrieved from tar
5.8 years ago by Björn ▴ 110
0
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6
replies
1.3k
views
Conduct miRNA (normalized) sequencing using TCGA-PRAD database for survival analysis ?
tcga mirna GUI linkedomics TCGAbiolinksGUI
updated 5.8 years ago by • 0 • written 5.9 years ago by ▴ 110
0
votes
2
replies
1.7k
views
How to find patient sample.type in TCGA-PRAD ?
TCGAbiolinks sample.type clinical.patient
5.8 years ago by Björn ▴ 110
0
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0
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1.7k
views
Comment: A: How to find patient sample.type in TCGA-PRAD ?
5.8 years ago by Björn ▴ 110
2
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8
replies
2.5k
views
Why "Parse XML clinical data" in TCGAbiolinks gives error in Rstudio ?
tcgabiolinks xml clinical data
updated 5.8 years ago by • 0 • written 5.8 years ago by ▴ 110
0
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1
reply
2.5k
views
Comment: A: How to link "miRNA gene quantification" and "clinical- Patient" data retrieved f
5.8 years ago by Björn ▴ 110
2
votes
3
replies
2.5k
views
How to link "miRNA gene quantification" and "clinical- Patient" data retrieved from TCGA
TCGA contrast mirnaseq edger
5.8 years ago by Björn ▴ 110
0
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1
reply
2.5k
views
Comment: C: Why "Parse XML clinical data" in TCGAbiolinks gives error in Rstudio ?
5.8 years ago by Björn ▴ 110
0
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1
reply
1.3k
views
Comment: C: Conduct miRNA (normalized) sequencing using TCGA-PRAD database for survival anal
5.8 years ago by Björn ▴ 110
0
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0
replies
1.2k
views
How to link clinical data with DE miRNA data retrieved using TCGAbiolinks
tcgabiolinks mirna clinical
5.9 years ago by Björn ▴ 110
2
votes
1
reply
2.7k
views
TCGAbiolinks download error
tcga tcgabiolinks R
updated 5.9 years ago by 11k • written 5.9 years ago by ▴ 110
0
votes
1
reply
1.3k
views
Comment: C: Conduct miRNA (normalized) sequencing using TCGA-PRAD database for survival anal
5.9 years ago by Björn ▴ 110
0
votes
1
reply
17k
views
Comment: C: Sample names for TCGA data from GDC-legacy archive
5.9 years ago by Björn ▴ 110
0
votes
1
reply
1.1k
views
How to combine differentially expressed miRNAs to calculate molecular signature score in edgeR?
edgeR mirna DE molecular signature
updated 5.9 years ago by 87k • written 5.9 years ago by ▴ 110
0
votes
0
replies
875
views
Why not investigate non-DE miRNAs ?
RNA-Seq differentially expressed DE miRNA edgeR
5.9 years ago by Björn ▴ 110
1
vote
1
reply
1.2k
views
How to present up and down regulated, and unchanged miRNAs in paired samples using Rstudio?
r rna-seq mirna venn diagram
updated 5.9 years ago by 20 • written 5.9 years ago by ▴ 110
0
votes
1
reply
994
views
How to find miRNAs of interest in TCGA ?
rna-seq tcga
5.9 years ago by Björn ▴ 110
0
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0
replies
3.1k
views
Comment: C: MicroRNA-target interactions databases
5.9 years ago by Björn ▴ 110
0
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1
reply
3.1k
views
Comment: A: MicroRNA-target interactions databases
5.9 years ago by Björn ▴ 110
3
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1
reply
3.2k
views
what is the function of prior.count in lcpm ?
RNA-Seq lcpm edgeR
5.9 years ago by Björn ▴ 110
0
votes
1
reply
2.2k
views
How to create heatmaps only with DE genes in edgeR
edgeR heatmap.2 pheatmap DE genes
updated 6.0 years ago by ▴ 240 • written 6.0 years ago by ▴ 110
0
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1
reply
2.2k
views
Comment: C: How to reorder column vectors in r to use for heatmap.2
6.0 years ago by Björn ▴ 110
0
votes
4
replies
2.2k
views
How to reorder column vectors in r to use for heatmap.2
heatmap.2 vector column
6.0 years ago by Björn ▴ 110
0
votes
1
reply
2.1k
views
Comment: C: how to give name of genes instead of unique ID created by "lcpm" ?
updated 6.0 years ago by 141k • written 6.0 years ago by ▴ 110
0
votes
1
reply
2.1k
views
Comment: C: how to give name of genes instead of unique ID created by "lcpm" ?
6.0 years ago by Björn ▴ 110
0
votes
5
replies
2.1k
views
how to give name of genes instead of unique ID created by "lcpm" ?
lcpm edgeR software error write.csv
6.0 years ago by Björn ▴ 110
0
votes
3
replies
4.7k
views
Paired line between two observations in stripchart ?
stripchart ggplot geom_line rstudio
6.0 years ago by Björn ▴ 110
0
votes
1
reply
4.7k
views
Comment: A: Paired line between two observations in stripchart ?
6.0 years ago by Björn ▴ 110
0
votes
1
reply
4.4k
views
Comment: C: How to highlight DE genes in plotMD ?
6.0 years ago by Björn ▴ 110
89 results • Page 1 of 2
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